Wall clock time and date at job start Mon Mar 30 2020 00:32:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53003 * 109.47444 * 2 1 4 4 C 1.53011 * 109.46978 * 239.99908 * 2 1 3 5 5 C 1.52999 * 109.47195 * 120.00296 * 2 1 3 6 6 N 1.46900 * 109.47141 * 35.66590 * 5 2 1 7 7 C 1.46894 * 111.00363 * 288.31779 * 6 5 2 8 8 C 1.50707 * 109.46869 * 314.23474 * 7 6 5 9 9 H 1.07997 * 119.99908 * 4.71745 * 8 7 6 10 10 C 1.37872 * 120.00057 * 184.71070 * 8 7 6 11 11 N 1.31516 * 119.99820 * 0.02562 * 10 8 7 12 12 Si 1.86798 * 120.00165 * 180.02562 * 10 8 7 13 13 H 1.48504 * 109.46760 * 60.00359 * 12 10 8 14 14 H 1.48501 * 109.47247 * 180.02562 * 12 10 8 15 15 H 1.48498 * 109.47472 * 300.00513 * 12 10 8 16 16 C 1.46904 * 110.99791 * 52.26916 * 6 5 2 17 17 C 1.53003 * 109.46972 * 60.54271 * 16 6 5 18 18 N 1.46501 * 109.46798 * 180.02562 * 17 16 6 19 19 C 1.34435 * 126.82368 * 125.00299 * 18 17 16 20 20 N 1.30834 * 108.07641 * 179.97438 * 19 18 17 21 21 C 1.33239 * 109.82962 * 359.97438 * 20 19 18 22 22 N 1.30708 * 108.94726 * 0.26473 * 21 20 19 23 23 H 1.09002 * 109.47346 * 298.30418 * 1 2 3 24 24 H 1.09007 * 109.47018 * 58.29974 * 1 2 3 25 25 H 1.08997 * 109.47601 * 178.30162 * 1 2 3 26 26 H 1.09000 * 109.47162 * 180.02562 * 3 2 1 27 27 H 1.08993 * 109.46803 * 299.99870 * 3 2 1 28 28 H 1.08996 * 109.46750 * 60.00269 * 3 2 1 29 29 H 1.08996 * 109.47009 * 323.25763 * 4 2 1 30 30 H 1.09000 * 109.46658 * 83.25957 * 4 2 1 31 31 H 1.09001 * 109.46753 * 203.25889 * 4 2 1 32 32 H 1.09005 * 109.47054 * 275.67073 * 5 2 1 33 33 H 1.08996 * 109.47344 * 155.67380 * 5 2 1 34 34 H 1.08992 * 109.47471 * 74.23835 * 7 6 5 35 35 H 1.09005 * 109.46891 * 194.24255 * 7 6 5 36 36 H 0.97006 * 119.99961 * 179.97438 * 11 10 8 37 37 H 1.09004 * 109.46832 * 300.54326 * 16 6 5 38 38 H 1.08995 * 109.47579 * 180.54032 * 16 6 5 39 39 H 1.08991 * 109.47634 * 60.00289 * 17 16 6 40 40 H 1.09002 * 109.47100 * 299.99987 * 17 16 6 41 41 H 1.07995 * 125.96146 * 359.97069 * 19 18 17 42 42 H 1.08006 * 125.52920 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 2.0400 -0.7213 1.2492 6 7 1.1424 -1.8390 1.5700 7 6 -0.1405 -1.3507 2.0930 8 6 0.1119 -0.2785 3.1217 9 1 1.1187 0.0648 3.3079 10 6 -0.9426 0.2641 3.8249 11 7 -2.1687 -0.1544 3.5984 12 14 -0.6299 1.5935 5.0994 13 1 0.0065 2.7654 4.4461 14 1 -1.9188 2.0062 5.7106 15 1 0.2712 1.0652 6.1549 16 6 0.9389 -2.7034 0.3997 17 6 2.2833 -3.2811 -0.0474 18 7 2.0804 -4.1426 -1.2149 19 6 2.6949 -4.0429 -2.4064 20 7 2.2401 -4.9959 -3.1788 21 6 1.3384 -5.7213 -2.5184 22 7 1.2023 -5.2343 -1.3131 23 1 -0.3634 0.4873 0.9048 24 1 -0.3633 0.5400 -0.8744 25 1 -0.3634 -1.0272 -0.0305 26 1 3.1300 1.4424 -0.0005 27 1 1.6768 1.9563 -0.8900 28 1 1.6768 1.9563 0.8900 29 1 1.3847 -1.5622 -1.4763 30 1 2.0473 -0.0288 -2.0910 31 1 3.0512 -1.0867 -1.0705 32 1 2.0653 -0.0239 2.0865 33 1 3.0439 -1.1031 1.0639 34 1 -0.7326 -0.9383 1.2762 35 1 -0.6827 -2.1762 2.5543 36 1 -2.9106 0.2271 4.0934 37 1 0.5062 -2.1193 -0.4125 38 1 0.2630 -3.5172 0.6622 39 1 2.7160 -3.8652 0.7647 40 1 2.9592 -2.4673 -0.3099 41 1 3.4349 -3.3048 -2.6785 42 1 0.8030 -6.5708 -2.9162 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000078642973.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:32:17 Heat of formation + Delta-G solvation = 152.249691 kcal Electronic energy + Delta-G solvation = -21709.818880 eV Core-core repulsion = 18729.728655 eV Total energy + Delta-G solvation = -2980.090224 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.180 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.99650 -39.76963 -34.57131 -33.82245 -32.30250 -31.14589 -29.51484 -27.90756 -26.77196 -26.15928 -25.32515 -23.03161 -21.89548 -21.27961 -20.12381 -18.54411 -17.29717 -16.61102 -15.89350 -15.33606 -15.10690 -14.68417 -14.26392 -14.11521 -14.02645 -13.53833 -13.34880 -12.94981 -12.57789 -12.18327 -12.14090 -11.82344 -11.33423 -11.16934 -11.08095 -10.93480 -10.82695 -10.79648 -10.56006 -10.21927 -10.13047 -9.95321 -9.72859 -9.70606 -9.62945 -9.49384 -8.96717 -8.50158 -6.98817 -6.08746 -4.09100 1.72606 2.41849 3.01833 3.27388 3.33281 3.34835 4.33196 4.35551 4.52205 4.85298 5.04299 5.14171 5.19333 5.23416 5.27499 5.33966 5.40367 5.58521 5.77028 5.89734 5.94016 6.01407 6.05454 6.11742 6.25592 6.30944 6.35621 6.44966 6.46733 6.50289 6.66713 6.69176 6.83894 6.89766 7.19517 7.35090 7.42317 7.69212 8.02138 8.13715 8.15642 8.49409 8.96735 9.53590 11.01956 Molecular weight = 266.18amu Principal moments of inertia in cm(-1) A = 0.028164 B = 0.005349 C = 0.004844 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 993.948567 B = 5233.668975 C = 5779.212725 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.094 4.094 3 C -0.134 4.134 4 C -0.157 4.157 5 C 0.058 3.942 6 N -0.528 5.528 7 C 0.148 3.852 8 C -0.511 4.511 9 H 0.065 0.935 10 C 0.060 3.940 11 N -0.893 5.893 12 Si 0.892 3.108 13 H -0.277 1.277 14 H -0.288 1.288 15 H -0.277 1.277 16 C 0.024 3.976 17 C 0.115 3.885 18 N -0.364 5.364 19 C 0.247 3.753 20 N -0.554 5.554 21 C 0.187 3.813 22 N -0.312 5.312 23 H 0.100 0.900 24 H 0.027 0.973 25 H 0.073 0.927 26 H 0.046 0.954 27 H 0.044 0.956 28 H 0.061 0.939 29 H 0.061 0.939 30 H 0.048 0.952 31 H 0.051 0.949 32 H 0.099 0.901 33 H 0.048 0.952 34 H 0.045 0.955 35 H 0.026 0.974 36 H 0.262 0.738 37 H 0.062 0.938 38 H 0.076 0.924 39 H 0.092 0.908 40 H 0.111 0.889 41 H 0.213 0.787 42 H 0.213 0.787 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.313 -2.495 -10.352 14.146 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.095 4.095 3 C -0.192 4.192 4 C -0.214 4.214 5 C -0.071 4.071 6 N -0.252 5.252 7 C 0.024 3.976 8 C -0.549 4.549 9 H 0.083 0.917 10 C -0.142 4.142 11 N -0.532 5.532 12 Si 0.720 3.280 13 H -0.203 1.203 14 H -0.214 1.214 15 H -0.202 1.202 16 C -0.104 4.104 17 C -0.006 4.006 18 N -0.155 5.155 19 C -0.050 4.050 20 N -0.282 5.282 21 C -0.116 4.116 22 N -0.140 5.140 23 H 0.119 0.881 24 H 0.046 0.954 25 H 0.091 0.909 26 H 0.065 0.935 27 H 0.063 0.937 28 H 0.080 0.920 29 H 0.080 0.920 30 H 0.067 0.933 31 H 0.070 0.930 32 H 0.117 0.883 33 H 0.067 0.933 34 H 0.062 0.938 35 H 0.044 0.956 36 H 0.072 0.928 37 H 0.080 0.920 38 H 0.094 0.906 39 H 0.110 0.890 40 H 0.128 0.872 41 H 0.230 0.770 42 H 0.230 0.770 Dipole moment (debyes) X Y Z Total from point charges 8.951 -3.058 -9.611 13.485 hybrid contribution -0.152 1.374 0.180 1.394 sum 8.799 -1.684 -9.431 13.008 Atomic orbital electron populations 1.22951 0.94076 1.02480 1.02581 1.21183 0.96788 0.95711 0.95855 1.21821 0.99838 0.95853 1.01666 1.22624 0.99968 1.00672 0.98142 1.22511 0.94446 0.93473 0.96655 1.62359 1.17724 1.18729 1.26340 1.20860 0.85112 0.95612 0.96052 1.21196 0.93346 1.19707 1.20688 0.91697 1.24946 0.95115 0.97136 0.97037 1.69946 0.98696 1.42777 1.41824 0.86662 0.77411 0.82046 0.81920 1.20286 1.21373 1.20230 1.22762 0.94455 0.98116 0.95096 1.22411 1.00794 0.92408 0.84991 1.50652 1.29327 1.22964 1.12564 1.25959 0.98072 0.98358 0.82623 1.70498 1.15808 1.08375 1.33476 1.25959 0.96572 1.00343 0.88752 1.78096 1.13651 1.01230 1.21054 0.88118 0.95352 0.90912 0.93464 0.93657 0.92004 0.92026 0.93291 0.93027 0.88288 0.93328 0.93783 0.95576 0.92842 0.92049 0.90600 0.88984 0.87163 0.77017 0.77028 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.02 6.18 37.16 0.23 -2.79 16 2 C -0.09 -1.44 0.77 -154.50 -0.12 -1.56 16 3 C -0.13 -1.91 8.23 37.16 0.31 -1.61 16 4 C -0.16 -1.98 7.13 37.16 0.27 -1.71 16 5 C 0.06 0.98 4.54 -3.82 -0.02 0.96 16 6 N -0.53 -10.20 4.90 -236.07 -1.16 -11.36 16 7 C 0.15 3.51 4.23 -4.98 -0.02 3.49 16 8 C -0.51 -13.06 7.35 -34.44 -0.25 -13.31 16 9 H 0.07 1.62 5.54 -52.49 -0.29 1.33 16 10 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 11 N -0.89 -25.29 13.29 55.43 0.74 -24.55 16 12 Si 0.89 20.62 29.54 -169.99 -5.02 15.60 16 13 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 14 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 15 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 16 C 0.02 0.41 4.22 -3.82 -0.02 0.39 16 17 C 0.12 1.54 5.30 -4.04 -0.02 1.52 16 18 N -0.36 -4.93 3.64 -62.63 -0.23 -5.16 16 19 C 0.25 2.91 12.63 -90.65 -1.14 1.76 16 20 N -0.55 -7.45 11.19 -15.83 -0.18 -7.62 16 21 C 0.19 2.45 13.03 -91.82 -1.20 1.26 16 22 N -0.31 -4.76 12.57 29.29 0.37 -4.39 16 23 H 0.10 2.22 5.52 -51.93 -0.29 1.93 16 24 H 0.03 0.48 8.14 -51.93 -0.42 0.05 16 25 H 0.07 1.41 3.28 -51.93 -0.17 1.24 16 26 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 27 H 0.04 0.60 8.12 -51.93 -0.42 0.18 16 28 H 0.06 0.98 8.12 -51.93 -0.42 0.56 16 29 H 0.06 0.83 4.68 -51.93 -0.24 0.59 16 30 H 0.05 0.58 7.92 -51.93 -0.41 0.16 16 31 H 0.05 0.54 5.72 -51.93 -0.30 0.24 16 32 H 0.10 1.91 4.98 -51.93 -0.26 1.66 16 33 H 0.05 0.70 6.35 -51.93 -0.33 0.37 16 34 H 0.05 1.08 3.26 -61.12 -0.20 0.88 16 35 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 37 H 0.06 1.05 2.70 -51.93 -0.14 0.91 16 38 H 0.08 1.44 8.13 -51.93 -0.42 1.02 16 39 H 0.09 1.27 8.14 -51.93 -0.42 0.85 16 40 H 0.11 1.24 3.58 -51.93 -0.19 1.06 16 41 H 0.21 1.60 8.06 -52.49 -0.42 1.18 16 42 H 0.21 1.99 8.06 -52.48 -0.42 1.57 16 LS Contribution 310.38 15.07 4.68 4.68 Total: -1.00 -29.42 310.38 -8.64 -38.06 By element: Atomic # 1 Polarization: 10.61 SS G_CDS: -5.75 Total: 4.86 kcal Atomic # 6 Polarization: -8.02 SS G_CDS: -2.09 Total: -10.11 kcal Atomic # 7 Polarization: -52.63 SS G_CDS: -0.46 Total: -53.09 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -5.02 Total: 15.60 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -29.42 -8.64 -38.06 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078642973.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 190.306 kcal (2) G-P(sol) polarization free energy of solvation -29.421 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 160.885 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.635 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.056 kcal (6) G-S(sol) free energy of system = (1) + (5) 152.250 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds