Wall clock time and date at job start Mon Mar 30 2020 00:54:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86808 * 119.99905 * 2 1 4 4 H 1.48499 * 109.46832 * 239.99798 * 3 2 1 5 5 H 1.48498 * 109.47168 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47238 * 119.99738 * 3 2 1 7 7 C 1.37879 * 120.00499 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00153 * 180.02562 * 7 2 1 9 9 C 1.50699 * 119.99466 * 0.02562 * 7 2 1 10 10 N 1.46899 * 109.47155 * 184.77386 * 9 7 2 11 11 C 1.46900 * 110.99836 * 284.05588 * 10 9 7 12 12 C 1.52995 * 109.47268 * 169.99867 * 11 10 9 13 13 N 1.46897 * 109.47538 * 180.02562 * 12 11 10 14 14 C 1.46849 * 110.99892 * 294.20895 * 13 12 11 15 15 C 1.53036 * 109.52465 * 174.15549 * 14 13 12 16 16 C 1.53119 * 109.27816 * 59.18517 * 15 14 13 17 17 C 1.53124 * 109.15947 * 302.34476 * 16 15 14 18 18 C 1.46846 * 111.00373 * 170.00014 * 13 12 11 19 19 C 1.46905 * 111.00189 * 160.10469 * 10 9 7 20 20 C 1.53000 * 109.46703 * 287.80935 * 19 10 9 21 21 C 1.53001 * 117.49893 * 245.35195 * 20 19 10 22 22 C 1.53004 * 117.49578 * 176.69362 * 20 19 10 23 23 H 0.97003 * 119.99983 * 0.02562 * 1 2 3 24 24 H 1.08997 * 109.47407 * 64.77217 * 9 7 2 25 25 H 1.09000 * 109.46968 * 304.76983 * 9 7 2 26 26 H 1.09000 * 109.47024 * 50.00062 * 11 10 9 27 27 H 1.08999 * 109.47615 * 290.00045 * 11 10 9 28 28 H 1.08999 * 109.47260 * 59.99704 * 12 11 10 29 29 H 1.08998 * 109.47330 * 300.00207 * 12 11 10 30 30 H 1.09002 * 109.46710 * 294.17486 * 14 13 12 31 31 H 1.09004 * 109.46298 * 54.14360 * 14 13 12 32 32 H 1.09000 * 109.50493 * 299.24055 * 15 14 13 33 33 H 1.09000 * 109.50477 * 179.12056 * 15 14 13 34 34 H 1.08998 * 109.52720 * 182.44249 * 16 15 14 35 35 H 1.09003 * 109.52692 * 62.24368 * 16 15 14 36 36 H 1.09006 * 109.49982 * 297.71361 * 17 16 15 37 37 H 1.08998 * 109.50807 * 177.59839 * 17 16 15 38 38 H 1.08998 * 109.46298 * 305.85460 * 18 13 12 39 39 H 1.08997 * 109.46003 * 65.82527 * 18 13 12 40 40 H 1.08993 * 109.47210 * 47.81555 * 19 10 9 41 41 H 1.08997 * 109.46769 * 167.81581 * 19 10 9 42 42 H 1.09003 * 115.55284 * 31.02811 * 20 19 10 43 43 H 1.08991 * 117.50002 * 0.02562 * 21 20 19 44 44 H 1.09002 * 117.49272 * 145.02642 * 21 20 19 45 45 H 1.09002 * 117.49547 * 214.98223 * 22 20 19 46 46 H 1.08995 * 117.49594 * 359.97438 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2511 -2.4991 0.0005 10 7 2.2015 -3.6132 0.1164 11 6 2.8913 -3.8515 -1.1585 12 6 4.0392 -4.8392 -0.9405 13 7 4.7294 -5.0770 -2.2152 14 6 3.8491 -5.7617 -3.1705 15 6 4.5477 -5.8623 -4.5284 16 6 5.8578 -6.6382 -4.3666 17 6 6.7362 -5.9308 -3.3309 18 6 5.9741 -5.8281 -2.0077 19 6 1.5294 -4.8318 0.5871 20 6 1.1741 -4.6788 2.0673 21 6 1.8737 -5.6079 3.0615 22 6 0.3945 -5.8175 2.7280 23 1 -0.4850 0.8401 -0.0004 24 1 0.6905 -2.5950 -0.9293 25 1 0.5616 -2.5205 0.8444 26 1 3.2890 -2.9102 -1.5378 27 1 2.1876 -4.2658 -1.8805 28 1 3.6415 -5.7805 -0.5611 29 1 4.7429 -4.4249 -0.2185 30 1 3.6232 -6.7629 -2.8033 31 1 2.9228 -5.1976 -3.2796 32 1 4.7614 -4.8612 -4.9028 33 1 3.9003 -6.3844 -5.2330 34 1 6.3799 -6.6749 -5.3227 35 1 5.6416 -7.6519 -4.0294 36 1 6.9843 -4.9307 -3.6865 37 1 7.6523 -6.5016 -3.1799 38 1 6.5912 -5.3122 -1.2722 39 1 5.7382 -6.8288 -1.6459 40 1 0.6190 -4.9908 0.0093 41 1 2.1945 -5.6858 0.4595 42 1 0.9559 -3.6626 2.3959 43 1 2.5873 -6.3277 2.6610 44 1 2.1154 -5.2029 4.0442 45 1 -0.3363 -5.5505 3.4915 46 1 0.1344 -6.6754 2.1080 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000081044983.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:54:12 Heat of formation + Delta-G solvation = 20.643647 kcal Electronic energy + Delta-G solvation = -20972.348459 eV Core-core repulsion = 18090.091712 eV Total energy + Delta-G solvation = -2882.256747 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 266.205 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.04602 -37.69099 -35.62268 -33.51197 -32.32150 -30.83969 -28.49081 -27.52508 -25.05548 -23.58725 -23.00374 -22.06072 -21.60332 -20.48975 -19.68957 -19.24699 -16.54738 -15.99930 -15.36775 -14.93713 -14.82000 -14.60689 -14.42167 -13.97155 -13.75931 -13.47624 -13.25985 -12.94609 -12.56483 -12.40120 -12.09323 -11.94871 -11.45657 -11.23908 -11.21219 -11.01170 -10.88057 -10.78382 -10.67827 -10.55628 -10.42626 -10.28051 -10.13894 -9.87944 -9.64807 -9.45270 -9.16597 -8.35661 -8.10915 -7.18558 -5.96189 -3.96706 3.38692 3.41952 3.45738 3.96477 4.20762 4.49279 4.77299 4.83681 4.87843 4.95188 5.19319 5.24044 5.33252 5.36628 5.39179 5.48807 5.51599 5.54871 5.60053 5.69818 5.76985 5.83868 5.87362 5.89849 5.94224 6.00255 6.03496 6.09511 6.13098 6.19614 6.22291 6.27380 6.34068 6.41212 6.55021 6.72553 6.83614 7.28310 7.30078 7.33155 7.38913 7.88673 8.18151 8.26854 8.60557 9.10866 9.67008 11.14359 Molecular weight = 266.21amu Principal moments of inertia in cm(-1) A = 0.012368 B = 0.005646 C = 0.004250 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2263.419792 B = 4958.048187 C = 6587.128710 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.055 3.945 3 Si 0.896 3.104 4 H -0.277 1.277 5 H -0.289 1.289 6 H -0.277 1.277 7 C -0.501 4.501 8 H 0.063 0.937 9 C 0.194 3.806 10 N -0.532 5.532 11 C 0.070 3.930 12 C 0.061 3.939 13 N -0.536 5.536 14 C 0.052 3.948 15 C -0.117 4.117 16 C -0.120 4.120 17 C -0.117 4.117 18 C 0.058 3.942 19 C 0.083 3.917 20 C -0.129 4.129 21 C -0.179 4.179 22 C -0.190 4.190 23 H 0.261 0.739 24 H -0.012 1.012 25 H 0.036 0.964 26 H 0.089 0.911 27 H 0.017 0.983 28 H 0.026 0.974 29 H 0.080 0.920 30 H 0.026 0.974 31 H 0.079 0.921 32 H 0.072 0.928 33 H 0.062 0.938 34 H 0.060 0.940 35 H 0.055 0.945 36 H 0.071 0.929 37 H 0.062 0.938 38 H 0.074 0.926 39 H 0.027 0.973 40 H 0.025 0.975 41 H 0.059 0.941 42 H 0.115 0.885 43 H 0.086 0.914 44 H 0.088 0.912 45 H 0.089 0.911 46 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.198 -14.489 -3.693 17.052 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.146 4.146 3 Si 0.724 3.276 4 H -0.203 1.203 5 H -0.215 1.215 6 H -0.202 1.202 7 C -0.540 4.540 8 H 0.081 0.919 9 C 0.069 3.931 10 N -0.257 5.257 11 C -0.058 4.058 12 C -0.066 4.066 13 N -0.261 5.261 14 C -0.076 4.076 15 C -0.155 4.155 16 C -0.158 4.158 17 C -0.154 4.154 18 C -0.071 4.071 19 C -0.045 4.045 20 C -0.147 4.147 21 C -0.216 4.216 22 C -0.228 4.228 23 H 0.070 0.930 24 H 0.005 0.995 25 H 0.054 0.946 26 H 0.108 0.892 27 H 0.035 0.965 28 H 0.044 0.956 29 H 0.099 0.901 30 H 0.044 0.956 31 H 0.098 0.902 32 H 0.091 0.909 33 H 0.081 0.919 34 H 0.079 0.921 35 H 0.074 0.926 36 H 0.090 0.910 37 H 0.081 0.919 38 H 0.092 0.908 39 H 0.045 0.955 40 H 0.043 0.957 41 H 0.077 0.923 42 H 0.133 0.867 43 H 0.105 0.895 44 H 0.107 0.893 45 H 0.108 0.892 46 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 8.513 -13.770 -3.544 16.573 hybrid contribution -0.500 -0.107 -0.173 0.540 sum 8.013 -13.877 -3.717 16.450 Atomic orbital electron populations 1.69949 1.06030 1.26744 1.51396 1.24971 0.94821 0.99198 0.95618 0.86587 0.79440 0.82883 0.78656 1.20285 1.21484 1.20232 1.21136 0.93529 0.89858 1.49454 0.91924 1.19757 0.90172 0.87342 0.95850 1.62013 1.31490 1.04712 1.27477 1.21916 0.93808 0.99501 0.90582 1.22176 0.96923 0.97766 0.89775 1.61812 1.05279 1.47570 1.11469 1.22140 0.96459 0.96407 0.92553 1.21588 0.96267 1.01106 0.96529 1.21574 0.96463 0.98767 0.98989 1.21587 0.97511 1.01293 0.95056 1.22044 0.91755 0.95821 0.97431 1.21629 0.96294 0.93740 0.92838 1.22346 1.02224 0.96238 0.93925 1.22913 0.94539 1.03526 1.00629 1.22933 0.94615 1.01262 1.03991 0.92990 0.99472 0.94625 0.89218 0.96455 0.95613 0.90135 0.95555 0.90236 0.90949 0.91904 0.92108 0.92621 0.90999 0.91937 0.90784 0.95504 0.95670 0.92263 0.86731 0.89542 0.89347 0.89236 0.89536 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.92 13.29 55.43 0.74 -26.18 16 2 C 0.05 1.56 5.46 -17.82 -0.10 1.47 16 3 Si 0.90 21.94 29.54 -169.99 -5.02 16.92 16 4 H -0.28 -6.70 7.11 56.52 0.40 -6.29 16 5 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 6 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 7 C -0.50 -14.14 8.62 -34.44 -0.30 -14.44 16 8 H 0.06 1.77 7.67 -52.49 -0.40 1.36 16 9 C 0.19 5.04 4.55 -4.98 -0.02 5.01 16 10 N -0.53 -11.41 4.38 -236.08 -1.03 -12.44 16 11 C 0.07 1.37 4.71 -3.83 -0.02 1.35 16 12 C 0.06 0.98 4.92 -3.83 -0.02 0.96 16 13 N -0.54 -7.73 4.66 -234.67 -1.09 -8.82 16 14 C 0.05 0.69 5.29 -3.83 -0.02 0.67 16 15 C -0.12 -1.30 6.09 -26.65 -0.16 -1.46 16 16 C -0.12 -1.18 6.00 -26.61 -0.16 -1.34 16 17 C -0.12 -1.20 6.09 -26.65 -0.16 -1.37 16 18 C 0.06 0.70 5.46 -3.83 -0.02 0.68 16 19 C 0.08 1.53 5.11 -3.82 -0.02 1.51 16 20 C -0.13 -2.26 5.58 -90.62 -0.51 -2.76 16 21 C -0.18 -2.60 10.18 -26.69 -0.27 -2.87 16 22 C -0.19 -2.72 10.25 -26.69 -0.27 -3.00 16 23 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 24 H -0.01 -0.35 8.00 -51.93 -0.42 -0.76 16 25 H 0.04 0.99 6.46 -51.93 -0.34 0.65 16 26 H 0.09 1.97 7.34 -51.93 -0.38 1.59 16 27 H 0.02 0.33 6.41 -51.93 -0.33 0.00 16 28 H 0.03 0.40 6.26 -51.93 -0.33 0.08 16 29 H 0.08 1.35 7.99 -51.93 -0.41 0.93 16 30 H 0.03 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.08 1.14 6.21 -51.93 -0.32 0.82 16 32 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 33 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.07 0.88 8.01 -51.93 -0.42 0.47 16 39 H 0.03 0.32 8.14 -51.93 -0.42 -0.11 16 40 H 0.03 0.48 8.05 -51.93 -0.42 0.06 16 41 H 0.06 0.98 5.67 -51.93 -0.29 0.69 16 42 H 0.11 2.33 6.88 -51.93 -0.36 1.98 16 43 H 0.09 1.17 8.04 -51.93 -0.42 0.75 16 44 H 0.09 1.21 8.14 -51.93 -0.42 0.79 16 45 H 0.09 1.20 8.14 -51.93 -0.42 0.78 16 46 H 0.09 1.14 8.14 -51.93 -0.42 0.71 16 LS Contribution 352.37 15.07 5.31 5.31 Total: -1.00 -29.13 352.37 -11.77 -40.90 By element: Atomic # 1 Polarization: 8.51 SS G_CDS: -8.62 Total: -0.11 kcal Atomic # 6 Polarization: -13.53 SS G_CDS: -2.05 Total: -15.58 kcal Atomic # 7 Polarization: -46.05 SS G_CDS: -1.39 Total: -47.44 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.02 Total: 16.92 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -29.13 -11.77 -40.90 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000081044983.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.546 kcal (2) G-P(sol) polarization free energy of solvation -29.132 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.413 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.770 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.902 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.644 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds