Wall clock time and date at job start Mon Mar 30 2020 01:13:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47222 * 2 1 4 4 H 1.09004 * 109.46747 * 56.24100 * 3 2 1 5 5 C 1.50699 * 109.47334 * 176.24494 * 3 2 1 6 6 H 1.08001 * 120.00049 * 120.00404 * 5 3 2 7 7 C 1.37885 * 119.99535 * 300.00127 * 5 3 2 8 8 N 1.31507 * 120.00167 * 0.02562 * 7 5 3 9 9 Si 1.86797 * 119.99607 * 179.97438 * 7 5 3 10 10 H 1.48504 * 109.46911 * 90.00192 * 9 7 5 11 11 H 1.48502 * 109.47400 * 210.00198 * 9 7 5 12 12 H 1.48502 * 109.47549 * 330.00632 * 9 7 5 13 13 N 1.46897 * 109.47406 * 296.24850 * 3 2 1 14 14 C 1.48041 * 111.00227 * 151.32189 * 13 3 2 15 15 C 1.52273 * 108.43187 * 207.58174 * 14 13 3 16 16 C 1.52069 * 112.75191 * 194.93926 * 15 14 13 17 17 H 1.10162 * 108.25316 * 171.25495 * 16 15 14 18 18 C 1.52553 * 111.35509 * 289.77934 * 16 15 14 19 19 C 1.52198 * 112.23651 * 69.79283 * 18 16 15 20 20 C 1.52198 * 112.68948 * 46.05567 * 19 18 16 21 21 C 1.52542 * 112.28254 * 314.02803 * 20 19 18 22 22 H 1.10160 * 107.96070 * 171.35827 * 21 20 19 23 23 C 1.52083 * 111.35053 * 290.05665 * 21 20 19 24 24 N 1.46117 * 111.36597 * 52.72017 * 16 15 14 25 25 C 1.46085 * 113.04056 * 67.85051 * 24 16 15 26 26 H 1.09002 * 109.46901 * 295.52804 * 1 2 3 27 27 H 1.08994 * 109.47571 * 55.52821 * 1 2 3 28 28 H 1.09001 * 109.47414 * 175.53351 * 1 2 3 29 29 H 1.09004 * 109.46683 * 240.00697 * 2 1 3 30 30 H 1.08995 * 109.47765 * 120.00684 * 2 1 3 31 31 H 0.97005 * 120.00006 * 179.97438 * 8 7 5 32 32 H 1.00908 * 110.99888 * 275.27275 * 13 3 2 33 33 H 1.09112 * 106.94205 * 326.41650 * 14 13 3 34 34 H 1.09991 * 108.72799 * 74.27746 * 15 14 13 35 35 H 1.09457 * 109.51413 * 317.63031 * 15 14 13 36 36 H 1.09592 * 108.96850 * 191.02363 * 18 16 15 37 37 H 1.09563 * 109.01665 * 308.46211 * 18 16 15 38 38 H 1.08728 * 110.89776 * 281.03662 * 19 18 16 39 39 H 1.10641 * 107.94614 * 165.16841 * 19 18 16 40 40 H 1.09581 * 109.34825 * 192.90912 * 20 19 18 41 41 H 1.09590 * 109.31993 * 75.09661 * 20 19 18 42 42 H 1.09460 * 109.89786 * 192.53541 * 23 21 20 43 43 H 1.09984 * 108.74434 * 309.41851 * 23 21 20 44 44 H 1.09007 * 109.46830 * 60.00296 * 25 24 16 45 45 H 1.08994 * 109.47422 * 179.97438 * 25 24 16 46 46 H 1.08994 * 109.47098 * 300.00804 * 25 24 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6227 1.9754 0.8544 5 6 3.5441 1.4435 0.0930 6 1 4.1334 1.8938 -0.6921 7 6 4.1679 0.8696 1.1806 8 7 3.4503 0.3209 2.1363 9 14 6.0323 0.8703 1.2956 10 1 6.4844 2.0981 1.9980 11 1 6.4821 -0.3264 2.0513 12 1 6.6127 0.8397 -0.0710 13 7 1.6258 2.1084 -1.2421 14 6 1.4650 3.5654 -1.0349 15 6 0.4376 4.0830 -2.0325 16 6 0.4542 5.5982 -2.1610 17 1 -0.1957 5.8801 -3.0047 18 6 -0.0905 6.2684 -0.9035 19 6 0.8488 6.1144 0.2841 20 6 2.2984 6.4123 -0.0714 21 6 2.7257 5.7373 -1.3709 22 1 3.7223 6.1209 -1.6412 23 6 2.8249 4.2288 -1.2046 24 7 1.7994 6.0938 -2.4433 25 6 2.2834 5.7116 -3.7675 26 1 -0.3633 0.4429 0.9274 27 1 -0.3634 0.5816 -0.8471 28 1 -0.3634 -1.0245 -0.0800 29 1 1.8932 -0.5138 -0.8901 30 1 1.8934 -0.5139 0.8898 31 1 3.8892 -0.0832 2.9013 32 1 2.2778 1.9191 -1.9887 33 1 1.1029 3.7034 -0.0149 34 1 -0.5636 3.7672 -1.7044 35 1 0.6142 3.6243 -3.0105 36 1 -0.2465 7.3339 -1.1067 37 1 -1.0631 5.8281 -0.6570 38 1 0.7532 5.1268 0.7287 39 1 0.5340 6.8341 1.0633 40 1 2.9493 6.0683 0.7402 41 1 2.4318 7.4954 -0.1719 42 1 3.3401 3.7922 -2.0660 43 1 3.4377 4.0106 -0.3177 44 1 1.6158 6.1153 -4.5288 45 1 3.2869 6.1100 -3.9166 46 1 2.3083 4.6247 -3.8455 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000088164582.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:13:53 Heat of formation + Delta-G solvation = -14.948364 kcal Electronic energy + Delta-G solvation = -22489.604836 eV Core-core repulsion = 19605.804703 eV Total energy + Delta-G solvation = -2883.800133 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 266.205 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.28364 -36.17027 -33.40128 -33.01449 -32.38210 -31.42043 -28.92105 -26.65896 -25.76269 -25.51201 -22.99977 -22.45892 -21.68166 -20.12170 -19.54839 -17.41454 -16.50299 -15.95715 -15.09428 -14.76860 -14.63465 -14.15025 -13.57471 -13.53870 -13.29392 -13.10674 -12.77094 -12.73384 -12.44789 -12.17198 -12.08963 -11.74832 -11.29039 -11.22219 -11.06950 -10.94100 -10.72869 -10.65188 -10.62968 -10.58320 -10.21971 -10.02974 -9.99510 -9.55768 -9.49832 -9.28248 -8.97276 -8.37403 -7.85867 -7.19812 -5.99866 -4.11719 3.24573 3.32544 3.34840 4.16600 4.38212 4.86629 5.02479 5.11287 5.19407 5.29404 5.37305 5.47309 5.57287 5.58453 5.65295 5.66473 5.77821 5.98238 6.00359 6.02122 6.07268 6.14202 6.22534 6.24706 6.36624 6.39581 6.42337 6.48024 6.52625 6.55338 6.59942 6.73339 6.91825 6.94031 7.16148 7.18908 7.46257 7.48861 7.50724 7.60431 7.78393 8.10737 8.16686 8.35667 8.67858 9.01573 9.55247 11.00309 Molecular weight = 266.21amu Principal moments of inertia in cm(-1) A = 0.019016 B = 0.006938 C = 0.006038 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1472.089189 B = 4034.540549 C = 4635.931583 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.106 4.106 3 C 0.217 3.783 4 H 0.029 0.971 5 C -0.539 4.539 6 H 0.054 0.946 7 C 0.067 3.933 8 N -0.885 5.885 9 Si 0.885 3.115 10 H -0.282 1.282 11 H -0.286 1.286 12 H -0.276 1.276 13 N -0.689 5.689 14 C 0.103 3.897 15 C -0.131 4.131 16 C 0.097 3.903 17 H 0.067 0.933 18 C -0.100 4.100 19 C -0.117 4.117 20 C -0.101 4.101 21 C 0.097 3.903 22 H 0.066 0.934 23 C -0.165 4.165 24 N -0.545 5.545 25 C 0.037 3.963 26 H 0.034 0.966 27 H 0.050 0.950 28 H 0.023 0.977 29 H 0.029 0.971 30 H 0.089 0.911 31 H 0.260 0.740 32 H 0.324 0.676 33 H 0.074 0.926 34 H 0.061 0.939 35 H 0.056 0.944 36 H 0.059 0.941 37 H 0.061 0.939 38 H 0.069 0.931 39 H 0.048 0.952 40 H 0.064 0.936 41 H 0.058 0.942 42 H 0.052 0.948 43 H 0.081 0.919 44 H 0.060 0.940 45 H 0.061 0.939 46 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.770 10.366 -6.703 13.234 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.145 4.145 3 C 0.109 3.891 4 H 0.047 0.953 5 C -0.578 4.578 6 H 0.072 0.928 7 C -0.135 4.135 8 N -0.523 5.523 9 Si 0.713 3.287 10 H -0.208 1.208 11 H -0.212 1.212 12 H -0.201 1.201 13 N -0.317 5.317 14 C -0.008 4.008 15 C -0.170 4.170 16 C -0.012 4.012 17 H 0.086 0.914 18 C -0.138 4.138 19 C -0.154 4.154 20 C -0.139 4.139 21 C -0.012 4.012 22 H 0.084 0.916 23 C -0.205 4.205 24 N -0.268 5.268 25 C -0.112 4.112 26 H 0.053 0.947 27 H 0.069 0.931 28 H 0.042 0.958 29 H 0.047 0.953 30 H 0.107 0.893 31 H 0.070 0.930 32 H 0.140 0.860 33 H 0.092 0.908 34 H 0.079 0.921 35 H 0.075 0.925 36 H 0.078 0.922 37 H 0.080 0.920 38 H 0.087 0.913 39 H 0.067 0.933 40 H 0.083 0.917 41 H 0.076 0.924 42 H 0.071 0.929 43 H 0.099 0.901 44 H 0.079 0.921 45 H 0.080 0.920 46 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges -5.461 10.588 -6.433 13.539 hybrid contribution 2.207 -0.746 0.216 2.340 sum -3.254 9.842 -6.217 12.087 Atomic orbital electron populations 1.21708 0.99134 0.98384 1.00299 1.21501 0.91994 0.99471 1.01515 1.19153 0.92620 0.91017 0.86298 0.95329 1.21882 0.92617 1.37496 1.05817 0.92779 1.24930 0.97724 0.95097 0.95791 1.69875 1.34819 1.37984 1.09662 0.86720 0.86425 0.77538 0.78045 1.20789 1.21206 1.20082 1.61371 1.53260 1.07098 1.10016 1.21291 0.92440 0.88746 0.98301 1.21857 1.00241 0.94821 1.00106 1.21218 0.89726 0.92755 0.97477 0.91448 1.21318 0.97985 1.00313 0.94212 1.21301 0.94801 1.02259 0.97073 1.21305 0.96302 0.99946 0.96354 1.21233 0.94893 0.94032 0.90996 0.91608 1.22620 0.99584 0.95002 1.03296 1.60452 1.02606 1.61837 1.01908 1.22030 1.00143 0.98980 0.89999 0.94686 0.93132 0.95771 0.95259 0.89323 0.92950 0.85962 0.90780 0.92072 0.92486 0.92244 0.92043 0.91256 0.93313 0.91738 0.92354 0.92932 0.90061 0.92073 0.92035 0.95271 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.86 9.85 37.16 0.37 -2.50 16 2 C -0.11 -2.54 5.44 -26.73 -0.15 -2.69 16 3 C 0.22 5.23 2.00 -68.87 -0.14 5.09 16 4 H 0.03 0.77 7.27 -51.93 -0.38 0.40 16 5 C -0.54 -14.03 7.15 -34.44 -0.25 -14.28 16 6 H 0.05 1.40 7.04 -52.49 -0.37 1.03 16 7 C 0.07 1.80 5.30 -17.82 -0.09 1.71 16 8 N -0.88 -24.73 11.30 55.43 0.63 -24.11 16 9 Si 0.88 20.94 29.54 -169.99 -5.02 15.92 16 10 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 11 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 12 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 13 N -0.69 -14.11 5.34 -100.89 -0.54 -14.65 16 14 C 0.10 1.84 2.06 -67.83 -0.14 1.70 16 15 C -0.13 -2.00 4.49 -27.58 -0.12 -2.12 16 16 C 0.10 1.31 2.55 -68.84 -0.18 1.13 16 17 H 0.07 0.84 8.17 -51.27 -0.42 0.42 16 18 C -0.10 -1.28 5.50 -27.37 -0.15 -1.43 16 19 C -0.12 -1.61 5.12 -27.55 -0.14 -1.75 16 20 C -0.10 -1.43 5.50 -27.37 -0.15 -1.58 16 21 C 0.10 1.45 2.55 -68.84 -0.18 1.28 16 22 H 0.07 0.96 8.09 -51.27 -0.41 0.55 16 23 C -0.16 -2.87 3.46 -27.57 -0.10 -2.97 16 24 N -0.54 -7.50 4.50 -229.53 -1.03 -8.53 16 25 C 0.04 0.46 9.21 59.62 0.55 1.01 16 26 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 27 H 0.05 1.01 7.59 -51.93 -0.39 0.62 16 28 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.03 0.70 8.14 -51.93 -0.42 0.27 16 30 H 0.09 2.37 5.98 -51.93 -0.31 2.06 16 31 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 32 H 0.32 6.75 7.77 -39.29 -0.31 6.45 16 33 H 0.07 1.47 4.73 -51.87 -0.25 1.23 16 34 H 0.06 0.95 8.17 -51.37 -0.42 0.53 16 35 H 0.06 0.89 7.41 -51.67 -0.38 0.51 16 36 H 0.06 0.71 8.19 -51.59 -0.42 0.29 16 37 H 0.06 0.73 8.14 -51.61 -0.42 0.31 16 38 H 0.07 1.08 5.67 -52.08 -0.30 0.79 16 39 H 0.05 0.60 8.28 -50.99 -0.42 0.18 16 40 H 0.06 0.95 8.14 -51.60 -0.42 0.53 16 41 H 0.06 0.76 8.19 -51.59 -0.42 0.34 16 42 H 0.05 0.95 7.15 -51.67 -0.37 0.58 16 43 H 0.08 1.66 7.01 -51.37 -0.36 1.29 16 44 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 45 H 0.06 0.72 8.03 -51.93 -0.42 0.30 16 46 H 0.03 0.39 6.36 -51.93 -0.33 0.06 16 LS Contribution 330.43 15.07 4.98 4.98 Total: -1.00 -26.35 330.43 -10.19 -36.54 By element: Atomic # 1 Polarization: 15.58 SS G_CDS: -8.34 Total: 7.23 kcal Atomic # 6 Polarization: -16.53 SS G_CDS: -0.86 Total: -17.39 kcal Atomic # 7 Polarization: -46.34 SS G_CDS: -0.95 Total: -47.28 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.92 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -26.35 -10.19 -36.54 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088164582.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.592 kcal (2) G-P(sol) polarization free energy of solvation -26.348 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.756 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.192 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.541 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.948 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds