Wall clock time and date at job start Mon Mar 30 2020 01:13:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53001 * 109.46795 * 2 1 4 4 H 1.08994 * 109.47480 * 303.59052 * 3 2 1 5 5 C 1.50699 * 109.46761 * 183.59121 * 3 2 1 6 6 H 1.08003 * 119.99845 * 240.00126 * 5 3 2 7 7 C 1.37873 * 120.00123 * 60.00370 * 5 3 2 8 8 N 1.31512 * 120.00102 * 359.97438 * 7 5 3 9 9 Si 1.86799 * 120.00046 * 179.97438 * 7 5 3 10 10 H 1.48495 * 109.47243 * 59.99996 * 9 7 5 11 11 H 1.48503 * 109.47276 * 179.97438 * 9 7 5 12 12 H 1.48500 * 109.47358 * 299.99780 * 9 7 5 13 13 N 1.46905 * 109.47131 * 63.59230 * 3 2 1 14 14 C 1.46474 * 111.00109 * 203.59405 * 13 3 2 15 15 C 1.51805 * 111.73574 * 78.45364 * 14 13 3 16 16 C 1.52059 * 113.55021 * 90.59978 * 15 14 13 17 17 H 1.10828 * 107.31995 * 168.80876 * 16 15 14 18 18 C 1.51733 * 112.55791 * 286.90975 * 16 15 14 19 19 C 1.51382 * 115.23930 * 80.78213 * 18 16 15 20 20 C 1.51476 * 115.96946 * 30.32484 * 19 18 16 21 21 C 1.52186 * 113.97014 * 326.86163 * 20 19 18 22 22 H 1.10783 * 107.32550 * 166.26633 * 21 20 19 23 23 C 1.51615 * 112.18648 * 284.30222 * 21 20 19 24 24 N 1.45954 * 109.81206 * 50.13529 * 21 20 19 25 25 C 1.46154 * 112.91129 * 166.47063 * 24 21 20 26 26 H 1.09000 * 109.47212 * 174.44717 * 1 2 3 27 27 H 1.09002 * 109.47029 * 294.44064 * 1 2 3 28 28 H 1.09002 * 109.47207 * 54.44150 * 1 2 3 29 29 H 1.08999 * 109.47042 * 240.00630 * 2 1 3 30 30 H 1.08993 * 109.47000 * 120.00149 * 2 1 3 31 31 H 0.97002 * 120.00485 * 180.02562 * 8 7 5 32 32 H 1.00904 * 110.99483 * 79.64196 * 13 3 2 33 33 H 1.11959 * 105.48312 * 323.48428 * 14 13 3 34 34 H 1.09634 * 109.60738 * 213.71316 * 15 14 13 35 35 H 1.10197 * 108.76540 * 329.70290 * 15 14 13 36 36 H 1.10255 * 108.58265 * 203.25921 * 18 16 15 37 37 H 1.10217 * 108.67247 * 318.13515 * 18 16 15 38 38 H 1.09288 * 110.91197 * 263.04585 * 19 18 16 39 39 H 1.11488 * 107.25465 * 150.03445 * 19 18 16 40 40 H 1.09967 * 109.30461 * 205.00586 * 20 19 18 41 41 H 1.09999 * 109.24974 * 88.59253 * 20 19 18 42 42 H 1.10372 * 108.50915 * 316.90400 * 23 21 20 43 43 H 1.10021 * 109.26885 * 201.88565 * 23 21 20 44 44 H 1.09005 * 109.46891 * 186.19641 * 25 24 21 45 45 H 1.09002 * 109.47034 * 306.20029 * 25 24 21 46 46 H 1.08999 * 109.47232 * 66.20121 * 25 24 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6251 1.9746 -0.8560 5 6 3.5443 1.4435 -0.0890 6 1 4.1315 1.8944 0.6973 7 6 4.1711 0.8687 -1.1742 8 7 3.4561 0.3191 -2.1315 9 14 6.0358 0.8704 -1.2849 10 1 6.6016 0.1459 -0.1186 11 1 6.4580 0.1956 -2.5385 12 1 6.5303 2.2707 -1.2852 13 7 1.6224 2.1095 1.2405 14 6 1.5799 3.5632 1.0662 15 6 0.3262 4.0051 0.3332 16 6 -0.8384 4.3223 1.2580 17 1 -1.6175 4.8218 0.6481 18 6 -1.4594 3.0759 1.8606 19 6 -0.7264 2.5022 3.0544 20 6 0.0168 3.4999 3.9187 21 6 0.5933 4.6778 3.1466 22 1 0.8838 5.4479 3.8882 23 6 1.8373 4.2981 2.3675 24 7 -0.4383 5.2656 2.2979 25 6 -0.0624 6.5755 1.7697 26 1 -0.3633 -1.0228 -0.0994 27 1 -0.3633 0.4252 0.9356 28 1 -0.3634 0.5976 -0.8360 29 1 1.8934 -0.5137 -0.8900 30 1 1.8933 -0.5138 0.8899 31 1 3.8970 -0.0856 -2.8949 32 1 2.2253 1.8548 2.0085 33 1 2.4391 3.8086 0.3917 34 1 0.5528 4.8784 -0.2898 35 1 0.0169 3.2026 -0.3558 36 1 -2.4965 3.3071 2.1547 37 1 -1.5305 2.3033 1.0777 38 1 -0.0645 1.6872 2.7511 39 1 -1.4865 2.0068 3.7023 40 1 0.8359 2.9871 4.4434 41 1 -0.6624 3.8855 4.6932 42 1 2.4731 3.6644 3.0097 43 1 2.4265 5.2038 2.1601 44 1 -0.9094 7.0096 1.2382 45 1 0.2245 7.2303 2.5925 46 1 0.7777 6.4635 1.0845 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000088164583.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:13:55 Heat of formation + Delta-G solvation = -14.038777 kcal Electronic energy + Delta-G solvation = -22714.594106 eV Core-core repulsion = 19830.833416 eV Total energy + Delta-G solvation = -2883.760690 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 266.205 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.09568 -36.11673 -33.25802 -33.04045 -32.42707 -31.40262 -29.10484 -26.59102 -25.96146 -25.55298 -23.02661 -22.35518 -21.81459 -19.99052 -19.36070 -16.79839 -16.57405 -15.48300 -15.23418 -14.85107 -14.65856 -14.26312 -13.86730 -13.65175 -13.15538 -12.99892 -12.83084 -12.64619 -12.49519 -12.10071 -11.98696 -11.46666 -11.34331 -11.20367 -10.95855 -10.92769 -10.75890 -10.65534 -10.61422 -10.43881 -10.15605 -9.75976 -9.73889 -9.55546 -9.50596 -9.37477 -9.01215 -8.36686 -7.81355 -7.08825 -5.98828 -4.12110 3.26256 3.31826 3.34075 4.21515 4.38554 4.93583 5.05785 5.11335 5.24488 5.32654 5.38198 5.44314 5.52836 5.57636 5.69894 5.73944 5.78062 5.97533 5.98282 6.06470 6.14607 6.21050 6.32558 6.37677 6.41179 6.43267 6.46354 6.52925 6.66374 6.68842 6.73899 6.76191 6.80103 7.03459 7.16333 7.22296 7.48106 7.51069 7.53853 7.62683 7.78965 8.11684 8.20437 8.38225 8.72708 9.02169 9.55471 11.00243 Molecular weight = 266.21amu Principal moments of inertia in cm(-1) A = 0.023432 B = 0.006517 C = 0.005860 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1194.672626 B = 4295.676846 C = 4776.817432 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.105 4.105 3 C 0.218 3.782 4 H 0.032 0.968 5 C -0.544 4.544 6 H 0.050 0.950 7 C 0.068 3.932 8 N -0.885 5.885 9 Si 0.886 3.114 10 H -0.278 1.278 11 H -0.287 1.287 12 H -0.280 1.280 13 N -0.675 5.675 14 C 0.106 3.894 15 C -0.129 4.129 16 C 0.106 3.894 17 H 0.059 0.941 18 C -0.084 4.084 19 C -0.103 4.103 20 C -0.090 4.090 21 C 0.103 3.897 22 H 0.060 0.940 23 C -0.137 4.137 24 N -0.540 5.540 25 C 0.034 3.966 26 H 0.022 0.978 27 H 0.050 0.950 28 H 0.035 0.965 29 H 0.087 0.913 30 H 0.029 0.971 31 H 0.261 0.739 32 H 0.326 0.674 33 H 0.029 0.971 34 H 0.047 0.953 35 H 0.073 0.927 36 H 0.042 0.958 37 H 0.065 0.935 38 H 0.088 0.912 39 H 0.031 0.969 40 H 0.056 0.944 41 H 0.049 0.951 42 H 0.063 0.937 43 H 0.050 0.950 44 H 0.062 0.938 45 H 0.061 0.939 46 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.533 7.437 8.167 13.370 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.144 4.144 3 C 0.110 3.890 4 H 0.049 0.951 5 C -0.583 4.583 6 H 0.069 0.931 7 C -0.135 4.135 8 N -0.523 5.523 9 Si 0.714 3.286 10 H -0.203 1.203 11 H -0.213 1.213 12 H -0.205 1.205 13 N -0.306 5.306 14 C -0.005 4.005 15 C -0.169 4.169 16 C -0.003 4.003 17 H 0.077 0.923 18 C -0.122 4.122 19 C -0.141 4.141 20 C -0.128 4.128 21 C -0.006 4.006 22 H 0.078 0.922 23 C -0.177 4.177 24 N -0.263 5.263 25 C -0.114 4.114 26 H 0.041 0.959 27 H 0.069 0.931 28 H 0.054 0.946 29 H 0.106 0.894 30 H 0.048 0.952 31 H 0.071 0.929 32 H 0.143 0.857 33 H 0.047 0.953 34 H 0.065 0.935 35 H 0.091 0.909 36 H 0.061 0.939 37 H 0.084 0.916 38 H 0.106 0.894 39 H 0.050 0.950 40 H 0.075 0.925 41 H 0.068 0.932 42 H 0.082 0.918 43 H 0.068 0.932 44 H 0.080 0.920 45 H 0.079 0.921 46 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges -8.592 7.352 8.130 13.927 hybrid contribution 2.899 0.129 -0.785 3.006 sum -5.693 7.481 7.344 11.930 Atomic orbital electron populations 1.21730 0.99018 0.98110 1.00459 1.21478 0.92025 0.99332 1.01522 1.19152 0.92127 0.90906 0.86792 0.95058 1.21843 0.92943 1.37647 1.05894 0.93144 1.24916 0.97780 0.95099 0.95671 1.69862 1.34929 1.37866 1.09670 0.86758 0.86368 0.78076 0.77352 1.20337 1.21255 1.20550 1.60580 1.56746 1.04651 1.08625 1.20684 0.95798 0.89999 0.93971 1.21803 0.96029 1.00953 0.98123 1.21009 0.95659 0.92639 0.90944 0.92277 1.20924 0.97344 0.95942 0.97963 1.20904 0.99329 0.98372 0.95471 1.21112 0.99227 0.95317 0.97182 1.21008 0.89555 0.96040 0.93964 0.92160 1.21907 0.97769 1.00242 0.97771 1.60729 1.39894 1.02871 1.22833 1.22080 0.99681 0.90470 0.99163 0.95909 0.93077 0.94624 0.89425 0.95232 0.92889 0.85725 0.95275 0.93470 0.90856 0.93925 0.91638 0.89375 0.95008 0.92536 0.93234 0.91805 0.93151 0.91954 0.92068 0.95446 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.69 9.72 37.16 0.36 -2.33 16 2 C -0.10 -2.43 5.44 -26.73 -0.15 -2.58 16 3 C 0.22 5.14 1.63 -68.86 -0.11 5.03 16 4 H 0.03 0.83 6.89 -51.93 -0.36 0.48 16 5 C -0.54 -14.35 8.02 -34.44 -0.28 -14.62 16 6 H 0.05 1.33 7.76 -52.48 -0.41 0.92 16 7 C 0.07 1.84 5.30 -17.82 -0.09 1.74 16 8 N -0.88 -24.79 11.30 55.43 0.63 -24.16 16 9 Si 0.89 21.09 29.54 -169.99 -5.02 16.07 16 10 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 11 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 12 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 13 N -0.68 -13.07 3.52 -101.43 -0.36 -13.43 16 14 C 0.11 1.92 1.97 -69.24 -0.14 1.78 16 15 C -0.13 -2.19 4.36 -27.82 -0.12 -2.31 16 16 C 0.11 1.56 2.40 -69.33 -0.17 1.40 16 17 H 0.06 0.84 8.21 -50.88 -0.42 0.42 16 18 C -0.08 -1.22 5.43 -28.19 -0.15 -1.38 16 19 C -0.10 -1.48 4.96 -28.32 -0.14 -1.62 16 20 C -0.09 -1.22 5.46 -27.92 -0.15 -1.37 16 21 C 0.10 1.43 2.36 -69.34 -0.16 1.26 16 22 H 0.06 0.78 8.08 -50.91 -0.41 0.37 16 23 C -0.14 -2.11 4.51 -28.12 -0.13 -2.24 16 24 N -0.54 -7.52 4.56 -230.11 -1.05 -8.57 16 25 C 0.03 0.42 9.22 59.66 0.55 0.97 16 26 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 27 H 0.05 0.94 6.54 -51.93 -0.34 0.61 16 28 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 29 H 0.09 2.30 5.98 -51.93 -0.31 1.99 16 30 H 0.03 0.68 8.14 -51.93 -0.42 0.25 16 31 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 32 H 0.33 6.42 7.72 -39.29 -0.30 6.12 16 33 H 0.03 0.64 7.41 -50.21 -0.37 0.26 16 34 H 0.05 0.78 7.39 -51.57 -0.38 0.40 16 35 H 0.07 1.39 6.90 -51.25 -0.35 1.03 16 36 H 0.04 0.58 8.25 -51.21 -0.42 0.16 16 37 H 0.07 1.02 7.31 -51.23 -0.37 0.64 16 38 H 0.09 1.42 5.87 -51.77 -0.30 1.11 16 39 H 0.03 0.42 8.33 -50.49 -0.42 0.00 16 40 H 0.06 0.73 7.99 -51.38 -0.41 0.32 16 41 H 0.05 0.63 8.23 -51.36 -0.42 0.21 16 42 H 0.06 0.98 7.31 -51.15 -0.37 0.61 16 43 H 0.05 0.76 8.06 -51.35 -0.41 0.35 16 44 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 45 H 0.06 0.67 8.01 -51.93 -0.42 0.25 16 46 H 0.03 0.36 6.48 -51.93 -0.34 0.02 16 LS Contribution 330.61 15.07 4.98 4.98 Total: -1.00 -26.33 330.61 -10.07 -36.40 By element: Atomic # 1 Polarization: 13.34 SS G_CDS: -8.37 Total: 4.97 kcal Atomic # 6 Polarization: -15.38 SS G_CDS: -0.88 Total: -16.26 kcal Atomic # 7 Polarization: -45.38 SS G_CDS: -0.78 Total: -46.16 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.07 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -26.33 -10.07 -36.40 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088164583.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.360 kcal (2) G-P(sol) polarization free energy of solvation -26.326 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.966 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.073 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.399 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.039 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds