Wall clock time and date at job start Mon Mar 30 2020 01:13:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53001 * 109.46795 * 2 1 4 4 H 1.08994 * 109.47480 * 303.59052 * 3 2 1 5 5 C 1.50699 * 109.46761 * 183.59121 * 3 2 1 6 6 H 1.08003 * 119.99845 * 240.00126 * 5 3 2 7 7 C 1.37873 * 120.00123 * 60.00370 * 5 3 2 8 8 N 1.31512 * 120.00102 * 359.97438 * 7 5 3 9 9 Si 1.86799 * 120.00046 * 179.97438 * 7 5 3 10 10 H 1.48495 * 109.47243 * 59.99996 * 9 7 5 11 11 H 1.48503 * 109.47276 * 179.97438 * 9 7 5 12 12 H 1.48500 * 109.47358 * 299.99780 * 9 7 5 13 13 N 1.46905 * 109.47131 * 63.59230 * 3 2 1 14 14 C 1.46474 * 111.00109 * 203.59405 * 13 3 2 15 15 C 1.51805 * 111.73574 * 78.45364 * 14 13 3 16 16 C 1.52059 * 113.55021 * 90.59978 * 15 14 13 17 17 H 1.10828 * 107.31995 * 168.80876 * 16 15 14 18 18 C 1.51733 * 112.55791 * 286.90975 * 16 15 14 19 19 C 1.51382 * 115.23930 * 80.78213 * 18 16 15 20 20 C 1.51476 * 115.96946 * 30.32484 * 19 18 16 21 21 C 1.52186 * 113.97014 * 326.86163 * 20 19 18 22 22 H 1.10783 * 107.32550 * 166.26633 * 21 20 19 23 23 C 1.51615 * 112.18648 * 284.30222 * 21 20 19 24 24 N 1.45954 * 109.81206 * 50.13529 * 21 20 19 25 25 C 1.46154 * 112.91129 * 166.47063 * 24 21 20 26 26 H 1.09000 * 109.47212 * 174.44717 * 1 2 3 27 27 H 1.09002 * 109.47029 * 294.44064 * 1 2 3 28 28 H 1.09002 * 109.47207 * 54.44150 * 1 2 3 29 29 H 1.08999 * 109.47042 * 240.00630 * 2 1 3 30 30 H 1.08993 * 109.47000 * 120.00149 * 2 1 3 31 31 H 0.97002 * 120.00485 * 180.02562 * 8 7 5 32 32 H 1.00904 * 110.99483 * 79.64196 * 13 3 2 33 33 H 1.11959 * 105.48312 * 323.48428 * 14 13 3 34 34 H 1.09634 * 109.60738 * 213.71316 * 15 14 13 35 35 H 1.10197 * 108.76540 * 329.70290 * 15 14 13 36 36 H 1.10255 * 108.58265 * 203.25921 * 18 16 15 37 37 H 1.10217 * 108.67247 * 318.13515 * 18 16 15 38 38 H 1.09288 * 110.91197 * 263.04585 * 19 18 16 39 39 H 1.11488 * 107.25465 * 150.03445 * 19 18 16 40 40 H 1.09967 * 109.30461 * 205.00586 * 20 19 18 41 41 H 1.09999 * 109.24974 * 88.59253 * 20 19 18 42 42 H 1.10372 * 108.50915 * 316.90400 * 23 21 20 43 43 H 1.10021 * 109.26885 * 201.88565 * 23 21 20 44 44 H 1.09005 * 109.46891 * 186.19641 * 25 24 21 45 45 H 1.09002 * 109.47034 * 306.20029 * 25 24 21 46 46 H 1.08999 * 109.47232 * 66.20121 * 25 24 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6251 1.9746 -0.8560 5 6 3.5443 1.4435 -0.0890 6 1 4.1315 1.8944 0.6973 7 6 4.1711 0.8687 -1.1742 8 7 3.4561 0.3191 -2.1315 9 14 6.0358 0.8704 -1.2849 10 1 6.6016 0.1459 -0.1186 11 1 6.4580 0.1956 -2.5385 12 1 6.5303 2.2707 -1.2852 13 7 1.6224 2.1095 1.2405 14 6 1.5799 3.5632 1.0662 15 6 0.3262 4.0051 0.3332 16 6 -0.8384 4.3223 1.2580 17 1 -1.6175 4.8218 0.6481 18 6 -1.4594 3.0759 1.8606 19 6 -0.7264 2.5022 3.0544 20 6 0.0168 3.4999 3.9187 21 6 0.5933 4.6778 3.1466 22 1 0.8838 5.4479 3.8882 23 6 1.8373 4.2981 2.3675 24 7 -0.4383 5.2656 2.2979 25 6 -0.0624 6.5755 1.7697 26 1 -0.3633 -1.0228 -0.0994 27 1 -0.3633 0.4252 0.9356 28 1 -0.3634 0.5976 -0.8360 29 1 1.8934 -0.5137 -0.8900 30 1 1.8933 -0.5138 0.8899 31 1 3.8970 -0.0856 -2.8949 32 1 2.2253 1.8548 2.0085 33 1 2.4391 3.8086 0.3917 34 1 0.5528 4.8784 -0.2898 35 1 0.0169 3.2026 -0.3558 36 1 -2.4965 3.3071 2.1547 37 1 -1.5305 2.3033 1.0777 38 1 -0.0645 1.6872 2.7511 39 1 -1.4865 2.0068 3.7023 40 1 0.8359 2.9871 4.4434 41 1 -0.6624 3.8855 4.6932 42 1 2.4731 3.6644 3.0097 43 1 2.4265 5.2038 2.1601 44 1 -0.9094 7.0096 1.2382 45 1 0.2245 7.2303 2.5925 46 1 0.7777 6.4635 1.0845 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000088164583.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:13:54 Heat of formation + Delta-G solvation = -28.900581 kcal Electronic energy + Delta-G solvation = -22715.238563 eV Core-core repulsion = 19830.833416 eV Total energy + Delta-G solvation = -2884.405146 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 266.205 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.33392 -37.84527 -34.79642 -34.34864 -33.68010 -33.22968 -30.67170 -28.15920 -27.19432 -27.04667 -24.69991 -23.72330 -23.03536 -21.38363 -21.17422 -18.61980 -17.99736 -16.92972 -16.70167 -16.38285 -15.97059 -15.56284 -15.38947 -15.18309 -14.70418 -14.39884 -14.14865 -14.06310 -13.82031 -13.38458 -13.19920 -13.18943 -13.07989 -12.97900 -12.55816 -12.47025 -12.32041 -12.13369 -12.01175 -11.83211 -11.70299 -11.43737 -11.32344 -11.00776 -10.96762 -10.74872 -10.66495 -10.44497 -9.03344 -8.82019 -8.03786 -6.27222 1.35178 1.36025 1.43172 2.37759 3.10639 3.14030 3.53915 3.79980 3.86382 4.12254 4.16565 4.22618 4.31762 4.46096 4.48445 4.52500 4.65257 4.67613 4.71634 4.80351 4.89894 4.91876 4.97593 5.00967 5.04726 5.10909 5.15742 5.16693 5.20270 5.26565 5.34649 5.39390 5.44140 5.53874 5.55943 5.60962 5.68793 5.82070 5.91061 6.16014 6.25338 6.35796 6.44025 6.44415 6.90296 7.08275 7.44353 8.90093 Molecular weight = 266.21amu Principal moments of inertia in cm(-1) A = 0.023432 B = 0.006517 C = 0.005860 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1194.672626 B = 4295.676846 C = 4776.817432 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.100 4.100 3 C 0.230 3.770 4 H -0.004 1.004 5 C -0.557 4.557 6 H 0.046 0.954 7 C 0.020 3.980 8 N -0.911 5.911 9 Si 0.945 3.055 10 H -0.271 1.271 11 H -0.284 1.284 12 H -0.279 1.279 13 N -0.655 5.655 14 C 0.116 3.884 15 C -0.122 4.122 16 C 0.110 3.890 17 H 0.069 0.931 18 C -0.084 4.084 19 C -0.104 4.104 20 C -0.091 4.091 21 C 0.103 3.897 22 H 0.081 0.919 23 C -0.132 4.132 24 N -0.537 5.537 25 C 0.033 3.967 26 H 0.039 0.961 27 H 0.065 0.935 28 H 0.026 0.974 29 H 0.055 0.945 30 H 0.027 0.973 31 H 0.261 0.739 32 H 0.326 0.674 33 H -0.019 1.019 34 H 0.044 0.956 35 H 0.046 0.954 36 H 0.058 0.942 37 H 0.050 0.950 38 H 0.067 0.933 39 H 0.044 0.956 40 H 0.061 0.939 41 H 0.064 0.936 42 H 0.065 0.935 43 H 0.053 0.947 44 H 0.074 0.926 45 H 0.079 0.921 46 H 0.013 0.987 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.167 8.370 10.115 15.461 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.138 4.138 3 C 0.121 3.879 4 H 0.013 0.987 5 C -0.597 4.597 6 H 0.064 0.936 7 C -0.180 4.180 8 N -0.550 5.550 9 Si 0.772 3.228 10 H -0.196 1.196 11 H -0.209 1.209 12 H -0.204 1.204 13 N -0.285 5.285 14 C 0.005 3.995 15 C -0.162 4.162 16 C 0.001 3.999 17 H 0.087 0.913 18 C -0.121 4.121 19 C -0.142 4.142 20 C -0.128 4.128 21 C -0.006 4.006 22 H 0.099 0.901 23 C -0.172 4.172 24 N -0.260 5.260 25 C -0.115 4.115 26 H 0.058 0.942 27 H 0.084 0.916 28 H 0.045 0.955 29 H 0.074 0.926 30 H 0.046 0.954 31 H 0.070 0.930 32 H 0.143 0.857 33 H -0.001 1.001 34 H 0.063 0.937 35 H 0.065 0.935 36 H 0.076 0.924 37 H 0.069 0.931 38 H 0.086 0.914 39 H 0.063 0.937 40 H 0.080 0.920 41 H 0.083 0.917 42 H 0.084 0.916 43 H 0.072 0.928 44 H 0.092 0.908 45 H 0.098 0.902 46 H 0.031 0.969 Dipole moment (debyes) X Y Z Total from point charges -9.230 8.294 10.093 15.995 hybrid contribution 3.091 -0.121 -1.409 3.399 sum -6.139 8.173 8.684 13.413 Atomic orbital electron populations 1.21568 0.96284 0.99155 1.00849 1.21319 0.94411 0.98365 0.99747 1.18861 0.90634 0.91187 0.87196 0.98651 1.22182 0.94493 1.37224 1.05776 0.93619 1.25626 1.01838 0.94995 0.95522 1.69999 1.36379 1.38532 1.10056 0.85816 0.81559 0.77969 0.77480 1.19640 1.20916 1.20440 1.60528 1.55844 1.05396 1.06725 1.20707 0.94624 0.89247 0.94881 1.21746 0.96528 0.99773 0.98165 1.20953 0.94613 0.93326 0.90960 0.91312 1.20912 0.98241 0.95327 0.97665 1.20876 0.99363 0.98213 0.95698 1.21116 0.99642 0.94909 0.97168 1.21064 0.88567 0.96923 0.94001 0.90083 1.21865 0.99135 0.99923 0.96255 1.60791 1.39847 1.03088 1.22257 1.22175 0.99694 0.89939 0.99719 0.94216 0.91614 0.95499 0.92633 0.95405 0.93006 0.85662 1.00051 0.93716 0.93496 0.92371 0.93147 0.91438 0.93696 0.91985 0.91704 0.91635 0.92812 0.90764 0.90198 0.96880 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.79 9.72 71.98 0.70 -4.09 16 2 C -0.10 -4.73 5.44 30.60 0.17 -4.56 16 3 C 0.23 11.25 1.63 44.17 0.07 11.32 16 4 H 0.00 -0.25 6.89 -2.39 -0.02 -0.27 16 5 C -0.56 -30.23 8.02 25.60 0.21 -30.02 16 6 H 0.05 2.46 7.76 -2.91 -0.02 2.44 16 7 C 0.02 1.11 5.30 84.65 0.45 1.56 16 8 N -0.91 -52.48 11.30 21.45 0.24 -52.24 16 9 Si 0.95 43.85 29.54 68.60 2.03 45.88 16 10 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 11 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 12 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 13 N -0.66 -25.83 3.52 -474.83 -1.67 -27.50 16 14 C 0.12 4.27 1.97 44.16 0.09 4.36 16 15 C -0.12 -4.20 4.36 29.89 0.13 -4.07 16 16 C 0.11 3.10 2.40 44.36 0.11 3.20 16 17 H 0.07 1.83 8.21 -1.40 -0.01 1.81 16 18 C -0.08 -2.29 5.43 29.65 0.16 -2.13 16 19 C -0.10 -2.75 4.96 29.57 0.15 -2.60 16 20 C -0.09 -2.16 5.46 29.83 0.16 -2.00 16 21 C 0.10 2.57 2.36 44.37 0.10 2.68 16 22 H 0.08 1.77 8.08 -1.43 -0.01 1.76 16 23 C -0.13 -3.92 4.51 29.69 0.13 -3.79 16 24 N -0.54 -13.53 4.56 -881.93 -4.02 -17.55 16 25 C 0.03 0.72 9.22 127.83 1.18 1.89 16 26 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 27 H 0.06 2.39 6.54 -2.39 -0.02 2.37 16 28 H 0.03 1.08 8.14 -2.39 -0.02 1.06 16 29 H 0.06 3.01 5.98 -2.39 -0.01 3.00 16 30 H 0.03 1.29 8.14 -2.39 -0.02 1.27 16 31 H 0.26 14.41 8.31 -92.71 -0.77 13.64 16 32 H 0.33 12.92 7.72 -89.69 -0.69 12.22 16 33 H -0.02 -0.85 7.41 -0.77 -0.01 -0.86 16 34 H 0.04 1.53 7.39 -2.05 -0.02 1.51 16 35 H 0.05 1.85 6.90 -1.75 -0.01 1.83 16 36 H 0.06 1.43 8.25 -1.71 -0.01 1.41 16 37 H 0.05 1.52 7.31 -1.73 -0.01 1.51 16 38 H 0.07 2.07 5.87 -2.23 -0.01 2.05 16 39 H 0.04 1.07 8.33 -1.04 -0.01 1.06 16 40 H 0.06 1.42 7.99 -1.87 -0.01 1.41 16 41 H 0.06 1.39 8.23 -1.85 -0.02 1.37 16 42 H 0.07 1.93 7.31 -1.65 -0.01 1.91 16 43 H 0.05 1.56 8.06 -1.84 -0.01 1.55 16 44 H 0.07 1.46 8.14 -2.38 -0.02 1.44 16 45 H 0.08 1.47 8.01 -2.39 -0.02 1.46 16 46 H 0.01 0.32 6.48 -2.39 -0.02 0.30 16 Total: -1.00 -57.53 330.61 0.69 -56.84 By element: Atomic # 1 Polarization: 22.52 SS G_CDS: 0.32 Total: 22.83 kcal Atomic # 6 Polarization: -32.05 SS G_CDS: 3.80 Total: -28.25 kcal Atomic # 7 Polarization: -91.84 SS G_CDS: -5.45 Total: -97.29 kcal Atomic # 14 Polarization: 43.85 SS G_CDS: 2.03 Total: 45.88 kcal Total: -57.53 0.69 -56.84 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088164583.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.936 kcal (2) G-P(sol) polarization free energy of solvation -57.526 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.590 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.690 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.837 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.901 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds