Wall clock time and date at job start Mon Mar 30 2020 00:27:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.34774 * 119.99970 * 2 1 4 4 O 1.21284 * 120.00120 * 359.72407 * 3 2 1 5 5 C 1.50700 * 119.99966 * 179.72304 * 3 2 1 6 6 H 1.09000 * 109.46474 * 33.52711 * 5 3 2 7 7 C 1.53042 * 109.46339 * 273.54882 * 5 3 2 8 8 C 1.53118 * 109.27778 * 180.80373 * 7 5 3 9 9 C 1.53119 * 109.16210 * 57.65391 * 8 7 5 10 10 C 1.53037 * 109.28051 * 302.34578 * 9 8 7 11 11 N 1.46845 * 109.46458 * 153.49815 * 5 3 2 12 12 C 1.46910 * 110.99977 * 305.85498 * 11 5 3 13 13 C 1.53007 * 109.46882 * 301.48627 * 12 11 5 14 14 C 1.50692 * 115.54815 * 294.46224 * 13 12 11 15 15 H 1.08004 * 120.00323 * 121.10323 * 14 13 12 16 16 C 1.37877 * 120.00270 * 301.09938 * 14 13 12 17 17 N 1.31511 * 120.00325 * 174.53658 * 16 14 13 18 18 Si 1.86803 * 119.99683 * 354.53703 * 16 14 13 19 19 H 1.48505 * 109.46957 * 86.08254 * 18 16 14 20 20 H 1.48505 * 109.46832 * 206.08048 * 18 16 14 21 21 H 1.48498 * 109.47169 * 326.08129 * 18 16 14 22 22 C 1.52995 * 117.49593 * 148.79098 * 13 12 11 23 23 C 1.52996 * 117.49732 * 80.13304 * 13 12 11 24 24 H 1.08998 * 109.47398 * 300.27730 * 1 2 3 25 25 H 1.09007 * 109.46756 * 60.27702 * 1 2 3 26 26 H 1.09001 * 109.47415 * 180.27009 * 1 2 3 27 27 H 0.96996 * 120.00180 * 179.72801 * 2 1 3 28 28 H 1.08993 * 109.50076 * 300.74661 * 7 5 3 29 29 H 1.09003 * 109.50177 * 60.82342 * 7 5 3 30 30 H 1.09000 * 109.52272 * 177.56185 * 8 7 5 31 31 H 1.09003 * 109.52415 * 297.75138 * 8 7 5 32 32 H 1.09009 * 109.50340 * 62.28569 * 9 8 7 33 33 H 1.08996 * 109.50619 * 182.39936 * 9 8 7 34 34 H 1.08993 * 109.46253 * 179.19150 * 10 9 8 35 35 H 1.08995 * 109.46017 * 299.17413 * 10 9 8 36 36 H 1.09000 * 109.46811 * 61.48466 * 12 11 5 37 37 H 1.08997 * 109.47361 * 181.48688 * 12 11 5 38 38 H 0.97005 * 120.00407 * 180.02562 * 17 16 14 39 39 H 1.08997 * 117.50294 * 0.02562 * 22 13 12 40 40 H 1.09009 * 117.49693 * 145.02014 * 22 13 12 41 41 H 1.09004 * 117.49756 * 214.97622 * 23 13 12 42 42 H 1.09000 * 117.50036 * 359.97438 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5325 2.2175 -0.0051 5 6 3.6459 1.1672 0.0063 6 1 4.0114 0.3091 -0.5577 7 6 4.1498 1.0813 1.4488 8 6 5.6808 1.1019 1.4516 9 6 6.1676 2.3775 0.7585 10 6 5.6052 2.4258 -0.6640 11 7 4.1378 2.4047 -0.6124 12 6 3.5614 2.5892 -1.9511 13 6 3.9196 1.3894 -2.8304 14 6 5.3853 1.2247 -3.1394 15 1 5.8983 0.3174 -2.8562 16 6 6.0715 2.2322 -3.7837 17 7 7.3714 2.1354 -3.9577 18 14 5.1547 3.7347 -4.4094 19 1 5.0411 4.7353 -3.3179 20 1 5.8976 4.3284 -5.5499 21 1 3.7966 3.3347 -4.8576 22 6 2.9191 0.9846 -3.9148 23 6 3.0853 0.1177 -2.6642 24 1 -0.3634 0.5181 0.8875 25 1 -0.3633 0.5096 -0.8925 26 1 -0.3634 -1.0276 0.0048 27 1 1.9500 -0.8400 0.0040 28 1 3.7734 1.9320 2.0169 29 1 3.7968 0.1555 1.9031 30 1 6.0435 1.0846 2.4793 31 1 6.0578 0.2302 0.9165 32 1 5.8229 3.2487 1.3158 33 1 7.2568 2.3775 0.7194 34 1 5.9382 3.3400 -1.1553 35 1 5.9612 1.5617 -1.2247 36 1 2.4773 2.6708 -1.8717 37 1 3.9625 3.4993 -2.3972 38 1 7.8543 2.8444 -4.4107 39 1 2.0059 1.5732 -4.0021 40 1 3.3210 0.5987 -4.8517 41 1 3.5966 -0.8381 -2.7788 42 1 2.2816 0.1357 -1.9282 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000088259384.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:27:49 Heat of formation + Delta-G solvation = 3.954854 kcal Electronic energy + Delta-G solvation = -22640.163778 eV Core-core repulsion = 19621.350255 eV Total energy + Delta-G solvation = -3018.813522 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.26638 -37.84557 -36.21007 -34.39583 -32.32549 -32.25098 -30.70124 -27.15269 -26.32034 -25.45585 -23.07343 -22.24831 -21.49974 -20.20874 -19.32018 -18.80206 -17.04031 -16.28571 -15.83933 -15.34847 -14.85770 -14.68869 -13.97333 -13.85999 -13.84021 -13.32320 -13.16737 -12.84482 -12.54892 -12.31447 -12.23689 -12.12927 -11.77025 -11.47960 -11.05136 -10.79056 -10.61137 -10.50229 -10.44282 -10.17236 -10.09359 -9.70008 -9.47826 -9.21479 -9.03271 -8.80821 -8.70098 -8.44497 -7.33470 -6.18021 -4.09868 2.99917 3.27640 3.37998 3.41329 3.45903 4.38731 4.61874 4.92736 5.01387 5.17871 5.26492 5.30527 5.41385 5.54573 5.59878 5.76054 5.82492 5.83042 5.89060 6.01779 6.10181 6.17640 6.21039 6.31174 6.39378 6.44919 6.45271 6.54069 6.59386 6.64335 6.74637 6.81027 6.93325 7.05008 7.14342 7.44392 7.59267 7.69912 7.91540 7.98384 8.42470 8.57528 8.80097 9.45374 10.92578 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.018753 B = 0.009806 C = 0.007623 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1492.757622 B = 2854.599847 C = 3672.310263 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.090 3.910 2 N -0.741 5.741 3 C 0.525 3.475 4 O -0.525 6.525 5 C 0.068 3.932 6 H 0.076 0.924 7 C -0.103 4.103 8 C -0.114 4.114 9 C -0.120 4.120 10 C 0.043 3.957 11 N -0.503 5.503 12 C 0.073 3.927 13 C -0.031 4.031 14 C -0.479 4.479 15 H 0.076 0.924 16 C 0.083 3.917 17 N -0.891 5.891 18 Si 0.869 3.131 19 H -0.273 1.273 20 H -0.296 1.296 21 H -0.256 1.256 22 C -0.194 4.194 23 C -0.202 4.202 24 H 0.055 0.945 25 H 0.056 0.944 26 H 0.071 0.929 27 H 0.401 0.599 28 H 0.070 0.930 29 H 0.060 0.940 30 H 0.057 0.943 31 H 0.063 0.937 32 H 0.057 0.943 33 H 0.062 0.938 34 H 0.066 0.934 35 H 0.100 0.900 36 H 0.066 0.934 37 H 0.067 0.933 38 H 0.266 0.734 39 H 0.065 0.935 40 H 0.083 0.917 41 H 0.080 0.920 42 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.669 -5.082 9.107 12.946 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 N -0.395 5.395 3 C 0.312 3.688 4 O -0.400 6.400 5 C -0.044 4.044 6 H 0.093 0.907 7 C -0.142 4.142 8 C -0.152 4.152 9 C -0.158 4.158 10 C -0.083 4.083 11 N -0.227 5.227 12 C -0.054 4.054 13 C -0.034 4.034 14 C -0.516 4.516 15 H 0.094 0.906 16 C -0.120 4.120 17 N -0.527 5.527 18 Si 0.697 3.303 19 H -0.199 1.199 20 H -0.223 1.223 21 H -0.180 1.180 22 C -0.233 4.233 23 C -0.240 4.240 24 H 0.074 0.926 25 H 0.075 0.925 26 H 0.090 0.910 27 H 0.234 0.766 28 H 0.088 0.912 29 H 0.079 0.921 30 H 0.076 0.924 31 H 0.081 0.919 32 H 0.075 0.925 33 H 0.080 0.920 34 H 0.084 0.916 35 H 0.118 0.882 36 H 0.084 0.916 37 H 0.085 0.915 38 H 0.075 0.925 39 H 0.084 0.916 40 H 0.102 0.898 41 H 0.098 0.902 42 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -8.096 -3.795 9.334 12.925 hybrid contribution -0.031 -0.262 -1.088 1.120 sum -8.127 -4.057 8.246 12.267 Atomic orbital electron populations 1.21453 0.80265 1.01711 1.02021 1.45981 1.07389 1.09045 1.77102 1.20741 0.90360 0.83203 0.74516 1.90650 1.70319 1.31233 1.47752 1.21608 0.89954 0.95835 0.97010 0.90660 1.21508 0.96672 1.01519 0.94458 1.21515 0.94526 0.99129 1.00012 1.21674 0.99659 0.97041 0.97388 1.22574 0.85809 1.05051 0.94903 1.62183 1.08611 1.31710 1.20173 1.22078 0.98559 0.97594 0.87190 1.20248 0.93690 0.92589 0.96845 1.20113 0.89667 1.03952 1.37879 0.90586 1.24826 0.94341 0.97866 0.94998 1.69876 1.06823 1.34068 1.41935 0.87078 0.81227 0.83505 0.78463 1.19913 1.22281 1.18043 1.22976 1.01469 1.04965 0.93891 1.23157 1.03525 0.96160 1.01123 0.92620 0.92481 0.91028 0.76557 0.91170 0.92133 0.92398 0.91855 0.92470 0.91964 0.91571 0.88201 0.91573 0.91467 0.92452 0.91639 0.89845 0.90162 0.89993 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.99 10.70 59.85 0.64 1.63 16 2 N -0.74 -9.71 4.18 -67.08 -0.28 -9.99 16 3 C 0.52 9.11 4.34 -10.99 -0.05 9.06 16 4 O -0.53 -11.03 14.98 5.55 0.08 -10.95 16 5 C 0.07 1.20 1.58 -68.87 -0.11 1.09 16 6 H 0.08 1.36 5.94 -51.93 -0.31 1.06 16 7 C -0.10 -1.53 5.36 -26.65 -0.14 -1.67 16 8 C -0.11 -1.67 6.00 -26.61 -0.16 -1.83 16 9 C -0.12 -2.04 6.09 -26.65 -0.16 -2.20 16 10 C 0.04 0.91 4.22 -3.83 -0.02 0.90 16 11 N -0.50 -10.48 4.45 -228.07 -1.02 -11.50 16 12 C 0.07 1.67 4.55 -3.82 -0.02 1.65 16 13 C -0.03 -0.71 0.40 -155.67 -0.06 -0.77 16 14 C -0.48 -12.35 6.00 -34.44 -0.21 -12.56 16 15 H 0.08 2.14 7.95 -52.48 -0.42 1.72 16 16 C 0.08 2.24 4.91 -17.82 -0.09 2.15 16 17 N -0.89 -25.43 13.96 55.43 0.77 -24.65 16 18 Si 0.87 21.49 24.85 -169.99 -4.22 17.26 16 19 H -0.27 -6.71 6.60 56.52 0.37 -6.34 16 20 H -0.30 -7.38 7.11 56.52 0.40 -6.98 16 21 H -0.26 -6.22 6.33 56.52 0.36 -5.86 16 22 C -0.19 -4.18 8.83 -26.70 -0.24 -4.42 16 23 C -0.20 -3.97 7.73 -26.70 -0.21 -4.17 16 24 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 25 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 26 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 27 H 0.40 4.24 8.78 -40.82 -0.36 3.88 16 28 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 29 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 30 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 32 H 0.06 0.95 8.14 -51.92 -0.42 0.53 16 33 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 34 H 0.07 1.53 7.97 -51.93 -0.41 1.12 16 35 H 0.10 2.35 4.98 -51.93 -0.26 2.09 16 36 H 0.07 1.54 5.87 -51.93 -0.30 1.23 16 37 H 0.07 1.64 3.89 -51.93 -0.20 1.44 16 38 H 0.27 7.27 8.31 -40.82 -0.34 6.93 16 39 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 40 H 0.08 1.83 8.14 -51.92 -0.42 1.41 16 41 H 0.08 1.55 8.14 -51.93 -0.42 1.12 16 42 H 0.08 1.45 4.04 -51.93 -0.21 1.24 16 LS Contribution 308.60 15.07 4.65 4.65 Total: -1.00 -30.22 308.60 -7.58 -37.79 By element: Atomic # 1 Polarization: 15.28 SS G_CDS: -6.75 Total: 8.52 kcal Atomic # 6 Polarization: -10.33 SS G_CDS: -0.81 Total: -11.14 kcal Atomic # 7 Polarization: -45.62 SS G_CDS: -0.52 Total: -46.14 kcal Atomic # 8 Polarization: -11.03 SS G_CDS: 0.08 Total: -10.95 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -4.22 Total: 17.26 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -30.22 -7.58 -37.79 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088259384.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.749 kcal (2) G-P(sol) polarization free energy of solvation -30.216 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.533 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.578 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.794 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.955 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds