Wall clock time and date at job start Mon Mar 30 2020 01:14:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.47618 * 2 1 4 4 H 1.09007 * 109.46734 * 58.80180 * 3 2 1 5 5 C 1.53002 * 109.47293 * 298.80826 * 3 2 1 6 6 N 1.46896 * 109.47263 * 178.80375 * 3 2 1 7 7 C 1.46959 * 110.99953 * 186.35816 * 6 3 2 8 8 C 1.53053 * 109.36434 * 183.18918 * 7 6 3 9 9 N 1.46956 * 109.36077 * 301.59613 * 8 7 6 10 10 C 1.46904 * 110.99872 * 183.19007 * 9 8 7 11 11 C 1.52997 * 109.47333 * 163.94563 * 10 9 8 12 12 C 1.50702 * 115.55261 * 303.78837 * 11 10 9 13 13 H 1.08000 * 120.00345 * 143.98008 * 12 11 10 14 14 C 1.37884 * 119.99491 * 323.98293 * 12 11 10 15 15 N 1.31508 * 120.00096 * 2.94366 * 14 12 11 16 16 Si 1.86800 * 119.99612 * 182.94556 * 14 12 11 17 17 H 1.48500 * 109.47134 * 359.97438 * 16 14 12 18 18 H 1.48496 * 109.47129 * 119.99937 * 16 14 12 19 19 H 1.48499 * 109.47095 * 239.99834 * 16 14 12 20 20 C 1.52994 * 117.49916 * 158.11197 * 11 10 9 21 21 C 1.53001 * 117.49483 * 89.45322 * 11 10 9 22 22 C 1.46953 * 110.88446 * 59.32060 * 9 8 7 23 23 C 1.46964 * 110.99730 * 310.15025 * 6 3 2 24 24 H 1.08999 * 109.47282 * 65.51755 * 1 2 3 25 25 H 1.08998 * 109.47236 * 185.52103 * 1 2 3 26 26 H 1.09003 * 109.46402 * 305.52277 * 1 2 3 27 27 H 1.09008 * 109.46518 * 240.00566 * 2 1 3 28 28 H 1.08998 * 109.47149 * 120.01033 * 2 1 3 29 29 H 1.08997 * 109.47480 * 59.99370 * 5 3 2 30 30 H 1.08996 * 109.46890 * 179.97438 * 5 3 2 31 31 H 1.08998 * 109.46728 * 299.99502 * 5 3 2 32 32 H 1.09000 * 109.49046 * 63.21386 * 7 6 3 33 33 H 1.08999 * 109.50293 * 303.16453 * 7 6 3 34 34 H 1.08996 * 109.48973 * 181.62865 * 8 7 6 35 35 H 1.09001 * 109.49042 * 61.56214 * 8 7 6 36 36 H 1.08994 * 109.46756 * 283.94842 * 10 9 8 37 37 H 1.09005 * 109.46883 * 43.95019 * 10 9 8 38 38 H 0.97005 * 119.99881 * 185.00833 * 15 14 12 39 39 H 1.09003 * 117.49853 * 0.02562 * 20 11 10 40 40 H 1.09007 * 117.49823 * 145.02443 * 20 11 10 41 41 H 1.09002 * 117.49586 * 214.97886 * 21 11 10 42 42 H 1.08994 * 117.50454 * 359.97438 * 21 11 10 43 43 H 1.09003 * 109.48800 * 60.64501 * 22 9 8 44 44 H 1.09003 * 109.48843 * 180.71068 * 22 9 8 45 45 H 1.08992 * 109.49412 * 296.77977 * 23 6 3 46 46 H 1.08998 * 109.48554 * 56.85257 * 23 6 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6593 1.9625 0.8791 5 6 1.5548 2.1551 -1.2640 6 7 3.5088 1.4425 0.0289 7 6 4.0325 2.8070 0.1817 8 6 5.5617 2.7727 0.1274 9 7 6.0674 1.8953 1.1923 10 6 7.5362 1.8954 1.2213 11 6 8.0201 1.3155 2.5519 12 6 7.4994 2.0025 3.7880 13 1 7.2718 1.4247 4.6716 14 6 7.3137 3.3687 3.7909 15 7 7.5355 4.0648 2.6974 16 14 6.7469 4.2309 5.3481 17 1 6.5687 3.2305 6.4310 18 1 7.7655 5.2301 5.7593 19 1 5.4553 4.9174 5.0917 20 6 9.4421 0.7533 2.6020 21 6 8.2420 -0.1966 2.6244 22 6 5.5437 0.5308 1.0397 23 6 4.0146 0.5651 1.0939 24 1 -0.3634 0.4259 -0.9352 25 1 -0.3633 -1.0229 0.0989 26 1 -0.3632 0.5971 0.8365 27 1 1.8933 -0.5138 -0.8901 28 1 1.8933 -0.5140 0.8899 29 1 0.4651 2.1550 -1.2855 30 1 1.9179 3.1828 -1.2637 31 1 1.9356 1.6351 -2.1430 32 1 3.7116 3.2145 1.1404 33 1 3.6540 3.4346 -0.6252 34 1 5.9533 3.7800 0.2695 35 1 5.8828 2.3907 -0.8416 36 1 7.9157 1.2871 0.4004 37 1 7.9016 2.9169 1.1158 38 1 7.4755 5.0328 2.7181 39 1 10.0331 0.7969 1.6871 40 1 10.0010 0.8800 3.5293 41 1 8.0118 -0.6944 3.5664 42 1 8.0429 -0.7783 1.7245 43 1 5.8646 0.1233 0.0810 44 1 5.9223 -0.0964 1.8468 45 1 3.6936 0.9471 2.0629 46 1 3.6230 -0.4422 0.9518 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000088259481.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:14:34 Heat of formation + Delta-G solvation = 37.997249 kcal Electronic energy + Delta-G solvation = -21922.885057 eV Core-core repulsion = 19041.380819 eV Total energy + Delta-G solvation = -2881.504239 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 266.205 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.09524 -37.09463 -35.25762 -32.49208 -31.97134 -30.54631 -28.99918 -26.72954 -25.37615 -24.32058 -22.94590 -22.28382 -21.02872 -19.87413 -19.07672 -18.81870 -16.36301 -15.79743 -15.07833 -14.63783 -14.48707 -14.10247 -14.05538 -13.80516 -13.53396 -13.23347 -13.05689 -12.57167 -12.39461 -12.24485 -11.66893 -11.54177 -11.46349 -11.19869 -11.00511 -10.95292 -10.86131 -10.58324 -10.54667 -10.39509 -10.37955 -10.14415 -10.03322 -9.71343 -9.26040 -8.73970 -8.56393 -8.01654 -7.93500 -6.99232 -5.79508 -3.88482 3.34608 3.43125 3.46793 4.18594 4.49866 4.85462 4.88590 4.98210 5.24845 5.29580 5.44357 5.47685 5.55460 5.58379 5.68210 5.74298 5.86742 5.91733 5.93897 5.98266 6.01186 6.04021 6.08866 6.19068 6.25418 6.27575 6.34498 6.45302 6.46523 6.63193 6.64993 6.67785 6.72566 6.77733 6.94620 7.00162 7.28383 7.38501 7.47511 7.49995 7.70675 8.11083 8.34253 8.39829 8.65285 9.06998 9.72159 11.16787 Molecular weight = 266.21amu Principal moments of inertia in cm(-1) A = 0.019981 B = 0.005916 C = 0.005352 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1401.020392 B = 4732.080168 C = 5230.443051 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.122 4.122 3 C 0.079 3.921 4 H 0.036 0.964 5 C -0.142 4.142 6 N -0.536 5.536 7 C 0.060 3.940 8 C 0.068 3.932 9 N -0.494 5.494 10 C 0.105 3.895 11 C 0.066 3.934 12 C -0.466 4.466 13 H 0.053 0.947 14 C 0.084 3.916 15 N -0.875 5.875 16 Si 0.889 3.111 17 H -0.276 1.276 18 H -0.287 1.287 19 H -0.286 1.286 20 C -0.210 4.210 21 C -0.218 4.218 22 C 0.059 3.941 23 C 0.057 3.943 24 H 0.055 0.945 25 H 0.052 0.948 26 H 0.051 0.949 27 H 0.068 0.932 28 H 0.065 0.935 29 H 0.056 0.944 30 H 0.053 0.947 31 H 0.060 0.940 32 H 0.039 0.961 33 H 0.068 0.932 34 H 0.082 0.918 35 H 0.018 0.982 36 H -0.020 1.020 37 H 0.123 0.877 38 H 0.254 0.746 39 H 0.061 0.939 40 H 0.076 0.924 41 H 0.072 0.928 42 H 0.063 0.937 43 H 0.018 0.982 44 H 0.082 0.918 45 H 0.040 0.960 46 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.036 -4.185 -7.026 12.945 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.159 4.159 3 C -0.029 4.029 4 H 0.054 0.946 5 C -0.200 4.200 6 N -0.261 5.261 7 C -0.068 4.068 8 C -0.061 4.061 9 N -0.217 5.217 10 C -0.022 4.022 11 C 0.065 3.935 12 C -0.503 4.503 13 H 0.071 0.929 14 C -0.118 4.118 15 N -0.513 5.513 16 Si 0.717 3.283 17 H -0.201 1.201 18 H -0.214 1.214 19 H -0.213 1.213 20 C -0.249 4.249 21 C -0.256 4.256 22 C -0.070 4.070 23 C -0.071 4.071 24 H 0.074 0.926 25 H 0.071 0.929 26 H 0.071 0.929 27 H 0.087 0.913 28 H 0.084 0.916 29 H 0.075 0.925 30 H 0.072 0.928 31 H 0.079 0.921 32 H 0.057 0.943 33 H 0.086 0.914 34 H 0.100 0.900 35 H 0.036 0.964 36 H -0.002 1.002 37 H 0.140 0.860 38 H 0.064 0.936 39 H 0.080 0.920 40 H 0.094 0.906 41 H 0.090 0.910 42 H 0.081 0.919 43 H 0.036 0.964 44 H 0.101 0.899 45 H 0.058 0.942 46 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -10.111 -3.978 -7.103 12.981 hybrid contribution -0.203 0.373 0.868 0.966 sum -10.314 -3.605 -6.235 12.580 Atomic orbital electron populations 1.21801 0.95928 1.01367 1.01708 1.21679 0.95296 0.96346 1.02618 1.21620 0.88156 0.95866 0.97294 0.94559 1.21866 1.00039 1.00307 0.97789 1.62269 1.06639 1.10379 1.46834 1.22179 0.95933 0.88952 0.99751 1.21999 0.92824 0.98903 0.92346 1.61771 1.09941 1.06480 1.43491 1.21875 0.84826 1.03062 0.92438 1.19006 0.91508 0.87723 0.95244 1.20357 1.42214 0.91812 0.95912 0.92927 1.24749 0.94271 0.97392 0.95360 1.69773 1.50081 1.05719 1.25708 0.86608 0.78239 0.79545 0.83861 1.20128 1.21352 1.21252 1.22989 0.93345 1.08580 0.99950 1.22932 1.06534 0.96411 0.99705 1.22175 0.92916 0.92613 0.99274 1.22235 0.95961 0.96343 0.92564 0.92587 0.92878 0.92938 0.91322 0.91612 0.92533 0.92757 0.92092 0.94272 0.91374 0.90003 0.96393 1.00184 0.86000 0.93582 0.92019 0.90566 0.90983 0.91879 0.96402 0.89936 0.94200 0.91086 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.43 9.43 37.16 0.35 -1.08 16 2 C -0.12 -1.41 4.91 -26.73 -0.13 -1.54 16 3 C 0.08 1.06 2.21 -67.71 -0.15 0.91 16 4 H 0.04 0.52 8.12 -51.92 -0.42 0.10 16 5 C -0.14 -1.64 8.81 37.16 0.33 -1.32 16 6 N -0.54 -8.60 4.58 -226.48 -1.04 -9.63 16 7 C 0.06 1.03 5.41 -3.76 -0.02 1.01 16 8 C 0.07 1.34 5.58 -3.77 -0.02 1.32 16 9 N -0.49 -10.84 4.32 -234.46 -1.01 -11.86 16 10 C 0.10 2.49 3.93 -3.82 -0.02 2.47 16 11 C 0.07 1.63 1.69 -155.66 -0.26 1.36 16 12 C -0.47 -12.59 8.78 -34.44 -0.30 -12.89 16 13 H 0.05 1.46 7.81 -52.49 -0.41 1.05 16 14 C 0.08 2.26 5.37 -17.82 -0.10 2.16 16 15 N -0.87 -23.41 10.27 55.43 0.57 -22.84 16 16 Si 0.89 21.25 29.54 -169.99 -5.02 16.23 16 17 H -0.28 -6.63 7.11 56.52 0.40 -6.22 16 18 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 19 H -0.29 -6.91 7.11 56.52 0.40 -6.50 16 20 C -0.21 -4.80 9.96 -26.70 -0.27 -5.07 16 21 C -0.22 -4.81 8.32 -26.69 -0.22 -5.03 16 22 C 0.06 1.16 5.35 -3.77 -0.02 1.14 16 23 C 0.06 0.97 5.05 -3.76 -0.02 0.96 16 24 H 0.06 0.49 6.76 -51.93 -0.35 0.14 16 25 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 26 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.07 0.81 8.14 -51.92 -0.42 0.39 16 28 H 0.07 0.80 6.17 -51.93 -0.32 0.48 16 29 H 0.06 0.55 6.58 -51.93 -0.34 0.21 16 30 H 0.05 0.64 6.50 -51.93 -0.34 0.30 16 31 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.07 1.04 6.35 -51.93 -0.33 0.71 16 34 H 0.08 1.71 8.02 -51.93 -0.42 1.29 16 35 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 36 H -0.02 -0.46 8.01 -51.93 -0.42 -0.87 16 37 H 0.12 3.16 5.55 -51.93 -0.29 2.87 16 38 H 0.25 6.57 8.32 -40.82 -0.34 6.23 16 39 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 40 H 0.08 1.75 8.14 -51.93 -0.42 1.32 16 41 H 0.07 1.57 8.14 -51.93 -0.42 1.15 16 42 H 0.06 1.30 7.97 -51.93 -0.41 0.88 16 43 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 44 H 0.08 1.71 5.97 -51.93 -0.31 1.40 16 45 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 46 H 0.07 1.07 5.97 -51.93 -0.31 0.76 16 LS Contribution 342.48 15.07 5.16 5.16 Total: -1.00 -26.82 342.48 -10.64 -37.47 By element: Atomic # 1 Polarization: 9.52 SS G_CDS: -8.45 Total: 1.07 kcal Atomic # 6 Polarization: -14.75 SS G_CDS: -0.85 Total: -15.59 kcal Atomic # 7 Polarization: -42.85 SS G_CDS: -1.48 Total: -44.33 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.23 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -26.82 -10.64 -37.47 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088259481.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.462 kcal (2) G-P(sol) polarization free energy of solvation -26.824 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.638 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.641 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.465 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.997 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds