Wall clock time and date at job start Mon Mar 30 2020 01:09:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53005 * 109.47059 * 2 1 4 4 C 1.53006 * 109.47183 * 119.99358 * 2 1 3 5 5 N 1.46892 * 109.47056 * 175.00345 * 4 2 1 6 6 C 1.46962 * 110.99728 * 170.00431 * 5 4 2 7 7 C 1.53051 * 109.36245 * 183.18862 * 6 5 4 8 8 N 1.46955 * 109.36629 * 301.59275 * 7 6 5 9 9 C 1.46902 * 111.00596 * 183.19048 * 8 7 6 10 10 C 1.52997 * 109.47169 * 160.85821 * 9 8 7 11 11 C 1.50697 * 115.55044 * 60.48947 * 10 9 8 12 12 H 1.08000 * 119.99810 * 232.83649 * 11 10 9 13 13 C 1.37879 * 120.00248 * 52.83398 * 11 10 9 14 14 N 1.31517 * 119.99640 * 5.95405 * 13 11 10 15 15 Si 1.86804 * 119.99938 * 186.23154 * 13 11 10 16 16 H 1.48498 * 109.46941 * 359.97438 * 15 13 11 17 17 H 1.48498 * 109.47051 * 120.00053 * 15 13 11 18 18 H 1.48503 * 109.46690 * 239.99844 * 15 13 11 19 19 C 1.53006 * 117.49604 * 206.15384 * 10 9 8 20 20 C 1.53002 * 117.49811 * 274.81509 * 10 9 8 21 21 C 1.46961 * 110.87861 * 59.32231 * 8 7 6 22 22 C 1.46955 * 111.00273 * 293.79768 * 5 4 2 23 23 H 1.08998 * 109.46886 * 300.00600 * 1 2 3 24 24 H 1.08998 * 109.46922 * 60.00603 * 1 2 3 25 25 H 1.09000 * 109.46691 * 180.02562 * 1 2 3 26 26 H 1.08997 * 109.47521 * 239.99808 * 2 1 3 27 27 H 1.09003 * 109.47088 * 179.97438 * 3 2 1 28 28 H 1.08998 * 109.46761 * 299.99495 * 3 2 1 29 29 H 1.08997 * 109.47111 * 59.99557 * 3 2 1 30 30 H 1.08994 * 109.46586 * 55.00344 * 4 2 1 31 31 H 1.08999 * 109.47287 * 295.00641 * 4 2 1 32 32 H 1.08994 * 109.49290 * 63.21961 * 6 5 4 33 33 H 1.09001 * 109.48682 * 303.15134 * 6 5 4 34 34 H 1.09002 * 109.48870 * 181.63215 * 7 6 5 35 35 H 1.08996 * 109.51290 * 61.57788 * 7 6 5 36 36 H 1.08998 * 109.46396 * 40.85425 * 9 8 7 37 37 H 1.09004 * 109.47019 * 280.86448 * 9 8 7 38 38 H 0.96999 * 119.99523 * 185.05406 * 14 13 11 39 39 H 1.08999 * 117.50093 * 215.00236 * 19 10 9 40 40 H 1.08999 * 117.49722 * 0.03172 * 19 10 9 41 41 H 1.08998 * 117.50174 * 359.97438 * 20 10 9 42 42 H 1.08994 * 117.49347 * 144.98153 * 20 10 9 43 43 H 1.09003 * 109.48826 * 60.64478 * 21 8 7 44 44 H 1.08994 * 109.49178 * 180.71123 * 21 8 7 45 45 H 1.09004 * 109.49284 * 296.78294 * 22 5 4 46 46 H 1.09007 * 109.48584 * 56.82468 * 22 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7211 1.2494 5 7 3.5040 -0.8265 1.1906 6 6 4.0500 -1.2965 2.4715 7 6 5.5785 -1.3165 2.3947 8 7 5.9997 -2.1929 1.2928 9 6 7.4637 -2.2983 1.2340 10 6 7.8537 -3.5406 0.4306 11 6 7.3783 -3.5658 -0.9991 12 1 6.8235 -4.4154 -1.3689 13 6 7.6514 -2.5040 -1.8353 14 7 8.4251 -1.5239 -1.4223 15 14 6.9164 -2.4539 -3.5519 16 1 6.0838 -3.6642 -3.7694 17 1 6.0729 -1.2401 -3.6940 18 1 8.0089 -2.4180 -4.5572 19 6 9.2085 -4.1828 0.7360 20 6 7.9162 -4.8743 1.1780 21 6 5.4536 -1.7229 0.0119 22 6 3.9252 -1.7028 0.0886 23 1 -0.3633 0.5139 0.8899 24 1 -0.3633 0.5137 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 1.8934 -0.5138 -0.8899 27 1 3.1300 1.4426 0.0005 28 1 1.6767 1.9563 -0.8900 29 1 1.6766 1.9564 0.8899 30 1 1.6054 -1.7196 1.2953 31 1 1.7516 -0.1582 2.1370 32 1 3.6830 -2.3022 2.6762 33 1 3.7348 -0.6245 3.2696 34 1 5.9848 -1.6924 3.3338 35 1 5.9474 -0.3064 2.2174 36 1 7.8629 -2.3791 2.2450 37 1 7.8728 -1.4105 0.7518 38 1 8.5583 -0.7427 -1.9816 39 1 9.7558 -4.6235 -0.0972 40 1 9.8216 -3.7205 1.5096 41 1 7.6799 -4.8665 2.2420 42 1 7.6131 -5.7697 0.6355 43 1 5.8207 -0.7172 -0.1928 44 1 5.7689 -2.3949 -0.7863 45 1 3.5567 -2.7132 0.2662 46 1 3.5185 -1.3272 -0.8504 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000088259482.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:09:59 Heat of formation + Delta-G solvation = 31.183238 kcal Electronic energy + Delta-G solvation = -21948.670147 eV Core-core repulsion = 19066.870431 eV Total energy + Delta-G solvation = -2881.799716 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 266.205 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -38.93852 -37.03768 -35.46300 -33.05421 -32.23248 -30.15291 -27.87062 -27.02986 -25.74493 -24.65084 -22.92262 -22.31832 -21.02322 -19.74589 -19.02736 -18.89220 -16.21788 -15.65927 -15.06647 -14.73088 -14.54415 -14.22420 -14.09056 -13.89231 -13.53690 -13.22170 -12.91697 -12.56296 -12.39370 -12.12910 -11.90870 -11.71341 -11.42394 -11.12818 -11.03918 -10.85150 -10.77131 -10.68109 -10.65122 -10.40611 -10.37295 -10.14394 -9.92414 -9.86096 -9.27658 -8.84635 -8.50389 -7.98364 -7.92326 -7.15471 -6.06059 -4.03771 3.23875 3.34245 3.36791 4.24528 4.34714 4.82987 4.89400 5.04210 5.15382 5.24331 5.45042 5.54916 5.61847 5.66617 5.71703 5.74275 5.76985 5.84124 5.93581 6.02727 6.05575 6.14070 6.15356 6.19474 6.21558 6.37606 6.43222 6.46374 6.49722 6.54893 6.69759 6.80487 6.83863 6.94299 7.05976 7.24998 7.34330 7.44908 7.48276 7.52893 7.58964 7.87899 8.25612 8.30419 8.50312 8.89450 9.48038 10.97934 Molecular weight = 266.21amu Principal moments of inertia in cm(-1) A = 0.018508 B = 0.006683 C = 0.005429 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1512.526363 B = 4188.807103 C = 5156.266398 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.096 4.096 3 C -0.136 4.136 4 C 0.061 3.939 5 N -0.538 5.538 6 C 0.064 3.936 7 C 0.055 3.945 8 N -0.523 5.523 9 C 0.096 3.904 10 C 0.062 3.938 11 C -0.475 4.475 12 H 0.061 0.939 13 C 0.071 3.929 14 N -0.875 5.875 15 Si 0.873 3.127 16 H -0.270 1.270 17 H -0.279 1.279 18 H -0.283 1.283 19 C -0.193 4.193 20 C -0.200 4.200 21 C 0.044 3.956 22 C 0.054 3.946 23 H 0.052 0.948 24 H 0.053 0.947 25 H 0.051 0.949 26 H 0.072 0.928 27 H 0.068 0.932 28 H 0.043 0.957 29 H 0.046 0.954 30 H 0.028 0.972 31 H 0.067 0.933 32 H 0.036 0.964 33 H 0.065 0.935 34 H 0.065 0.935 35 H 0.029 0.971 36 H 0.031 0.969 37 H 0.070 0.930 38 H 0.260 0.740 39 H 0.076 0.924 40 H 0.061 0.939 41 H 0.065 0.935 42 H 0.071 0.929 43 H 0.025 0.975 44 H 0.135 0.865 45 H 0.035 0.965 46 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.987 3.460 4.806 12.481 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.115 4.115 3 C -0.193 4.193 4 C -0.067 4.067 5 N -0.263 5.263 6 C -0.064 4.064 7 C -0.074 4.074 8 N -0.248 5.248 9 C -0.031 4.031 10 C 0.062 3.938 11 C -0.512 4.512 12 H 0.079 0.921 13 C -0.132 4.132 14 N -0.512 5.512 15 Si 0.700 3.300 16 H -0.194 1.194 17 H -0.204 1.204 18 H -0.209 1.209 19 C -0.232 4.232 20 C -0.237 4.237 21 C -0.083 4.083 22 C -0.073 4.073 23 H 0.071 0.929 24 H 0.073 0.927 25 H 0.070 0.930 26 H 0.090 0.910 27 H 0.087 0.913 28 H 0.062 0.938 29 H 0.065 0.935 30 H 0.046 0.954 31 H 0.085 0.915 32 H 0.054 0.946 33 H 0.084 0.916 34 H 0.083 0.917 35 H 0.047 0.953 36 H 0.049 0.951 37 H 0.088 0.912 38 H 0.070 0.930 39 H 0.094 0.906 40 H 0.079 0.921 41 H 0.084 0.916 42 H 0.090 0.910 43 H 0.043 0.957 44 H 0.152 0.848 45 H 0.053 0.947 46 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -10.850 3.621 4.727 12.376 hybrid contribution -0.334 0.130 -0.799 0.875 sum -11.183 3.751 3.928 12.432 Atomic orbital electron populations 1.21813 0.95577 1.01375 1.01512 1.21153 0.94647 0.97266 0.98453 1.21696 1.02509 0.94855 1.00277 1.22121 0.88286 0.98321 0.98000 1.62202 1.08513 1.51066 1.04489 1.22066 0.95447 0.97984 0.90893 1.22101 0.93839 0.95649 0.95836 1.62017 1.11746 1.47757 1.03244 1.21563 0.85216 1.00379 0.95949 1.18782 0.93458 0.87934 0.93676 1.20484 1.33771 1.03927 0.93055 0.92128 1.24934 0.94415 0.96274 0.97548 1.69956 1.35464 1.08011 1.37760 0.86831 0.79441 0.78498 0.85224 1.19388 1.20430 1.20916 1.22849 0.91771 1.06977 1.01595 1.22774 1.03691 0.98855 0.98391 1.22871 0.90367 1.00477 0.94576 1.22372 0.97872 0.93867 0.93232 0.92910 0.92741 0.92997 0.91006 0.91305 0.93762 0.93457 0.95366 0.91494 0.94619 0.91616 0.91709 0.95257 0.95085 0.91217 0.92974 0.90572 0.92076 0.91642 0.91039 0.95653 0.84757 0.94701 0.91387 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.47 9.19 37.16 0.34 -1.12 16 2 C -0.10 -1.20 2.85 -90.61 -0.26 -1.45 16 3 C -0.14 -1.69 9.08 37.16 0.34 -1.35 16 4 C 0.06 0.82 4.35 -3.83 -0.02 0.80 16 5 N -0.54 -8.72 4.16 -234.47 -0.98 -9.70 16 6 C 0.06 1.02 5.61 -3.76 -0.02 1.00 16 7 C 0.05 0.99 5.57 -3.77 -0.02 0.97 16 8 N -0.52 -11.15 4.64 -234.47 -1.09 -12.24 16 9 C 0.10 2.23 4.77 -3.82 -0.02 2.21 16 10 C 0.06 1.52 1.77 -155.66 -0.28 1.24 16 11 C -0.47 -12.35 6.53 -34.44 -0.22 -12.58 16 12 H 0.06 1.61 7.82 -52.49 -0.41 1.20 16 13 C 0.07 1.84 3.66 -17.82 -0.07 1.77 16 14 N -0.87 -23.53 11.48 55.43 0.64 -22.89 16 15 Si 0.87 20.14 29.03 -169.99 -4.93 15.21 16 16 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 17 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 18 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 19 C -0.19 -4.47 9.95 -26.69 -0.27 -4.73 16 20 C -0.20 -4.43 9.95 -26.69 -0.27 -4.69 16 21 C 0.04 0.96 4.74 -3.77 -0.02 0.95 16 22 C 0.05 1.00 5.42 -3.77 -0.02 0.98 16 23 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 24 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 25 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 26 H 0.07 0.98 6.28 -51.93 -0.33 0.66 16 27 H 0.07 1.01 7.75 -51.93 -0.40 0.60 16 28 H 0.04 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.03 0.38 8.12 -51.93 -0.42 -0.04 16 31 H 0.07 0.83 8.03 -51.93 -0.42 0.41 16 32 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.07 0.90 8.07 -51.93 -0.42 0.48 16 34 H 0.06 1.09 8.00 -51.93 -0.42 0.67 16 35 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.03 0.68 7.82 -51.93 -0.41 0.27 16 37 H 0.07 1.81 6.19 -51.93 -0.32 1.49 16 38 H 0.26 6.77 8.32 -40.82 -0.34 6.43 16 39 H 0.08 1.80 8.14 -51.93 -0.42 1.38 16 40 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 41 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 42 H 0.07 1.56 8.14 -51.93 -0.42 1.14 16 43 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 44 H 0.14 3.26 3.23 -51.93 -0.17 3.09 16 45 H 0.03 0.66 8.14 -51.93 -0.42 0.23 16 46 H 0.07 1.20 6.25 -51.93 -0.32 0.87 16 LS Contribution 345.78 15.07 5.21 5.21 Total: -1.00 -26.09 345.78 -10.61 -36.70 By element: Atomic # 1 Polarization: 12.40 SS G_CDS: -8.66 Total: 3.73 kcal Atomic # 6 Polarization: -15.22 SS G_CDS: -0.79 Total: -16.01 kcal Atomic # 7 Polarization: -43.40 SS G_CDS: -1.43 Total: -44.83 kcal Atomic # 14 Polarization: 20.14 SS G_CDS: -4.93 Total: 15.21 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -26.09 -10.61 -36.70 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088259482.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.879 kcal (2) G-P(sol) polarization free energy of solvation -26.090 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.789 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.606 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.696 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.183 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds