Wall clock time and date at job start Mon Mar 30 2020 01:09:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53005 * 109.47059 * 2 1 4 4 C 1.53006 * 109.47183 * 119.99358 * 2 1 3 5 5 N 1.46892 * 109.47056 * 175.00345 * 4 2 1 6 6 C 1.46962 * 110.99728 * 170.00431 * 5 4 2 7 7 C 1.53051 * 109.36245 * 183.18862 * 6 5 4 8 8 N 1.46955 * 109.36629 * 301.59275 * 7 6 5 9 9 C 1.46902 * 111.00596 * 183.19048 * 8 7 6 10 10 C 1.52997 * 109.47169 * 160.85821 * 9 8 7 11 11 C 1.50697 * 115.55044 * 60.48947 * 10 9 8 12 12 H 1.08000 * 119.99810 * 232.83649 * 11 10 9 13 13 C 1.37879 * 120.00248 * 52.83398 * 11 10 9 14 14 N 1.31517 * 119.99640 * 5.95405 * 13 11 10 15 15 Si 1.86804 * 119.99938 * 186.23154 * 13 11 10 16 16 H 1.48498 * 109.46941 * 359.97438 * 15 13 11 17 17 H 1.48498 * 109.47051 * 120.00053 * 15 13 11 18 18 H 1.48503 * 109.46690 * 239.99844 * 15 13 11 19 19 C 1.53006 * 117.49604 * 206.15384 * 10 9 8 20 20 C 1.53002 * 117.49811 * 274.81509 * 10 9 8 21 21 C 1.46961 * 110.87861 * 59.32231 * 8 7 6 22 22 C 1.46955 * 111.00273 * 293.79768 * 5 4 2 23 23 H 1.08998 * 109.46886 * 300.00600 * 1 2 3 24 24 H 1.08998 * 109.46922 * 60.00603 * 1 2 3 25 25 H 1.09000 * 109.46691 * 180.02562 * 1 2 3 26 26 H 1.08997 * 109.47521 * 239.99808 * 2 1 3 27 27 H 1.09003 * 109.47088 * 179.97438 * 3 2 1 28 28 H 1.08998 * 109.46761 * 299.99495 * 3 2 1 29 29 H 1.08997 * 109.47111 * 59.99557 * 3 2 1 30 30 H 1.08994 * 109.46586 * 55.00344 * 4 2 1 31 31 H 1.08999 * 109.47287 * 295.00641 * 4 2 1 32 32 H 1.08994 * 109.49290 * 63.21961 * 6 5 4 33 33 H 1.09001 * 109.48682 * 303.15134 * 6 5 4 34 34 H 1.09002 * 109.48870 * 181.63215 * 7 6 5 35 35 H 1.08996 * 109.51290 * 61.57788 * 7 6 5 36 36 H 1.08998 * 109.46396 * 40.85425 * 9 8 7 37 37 H 1.09004 * 109.47019 * 280.86448 * 9 8 7 38 38 H 0.96999 * 119.99523 * 185.05406 * 14 13 11 39 39 H 1.08999 * 117.50093 * 215.00236 * 19 10 9 40 40 H 1.08999 * 117.49722 * 0.03172 * 19 10 9 41 41 H 1.08998 * 117.50174 * 359.97438 * 20 10 9 42 42 H 1.08994 * 117.49347 * 144.98153 * 20 10 9 43 43 H 1.09003 * 109.48826 * 60.64478 * 21 8 7 44 44 H 1.08994 * 109.49178 * 180.71123 * 21 8 7 45 45 H 1.09004 * 109.49284 * 296.78294 * 22 5 4 46 46 H 1.09007 * 109.48584 * 56.82468 * 22 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7211 1.2494 5 7 3.5040 -0.8265 1.1906 6 6 4.0500 -1.2965 2.4715 7 6 5.5785 -1.3165 2.3947 8 7 5.9997 -2.1929 1.2928 9 6 7.4637 -2.2983 1.2340 10 6 7.8537 -3.5406 0.4306 11 6 7.3783 -3.5658 -0.9991 12 1 6.8235 -4.4154 -1.3689 13 6 7.6514 -2.5040 -1.8353 14 7 8.4251 -1.5239 -1.4223 15 14 6.9164 -2.4539 -3.5519 16 1 6.0838 -3.6642 -3.7694 17 1 6.0729 -1.2401 -3.6940 18 1 8.0089 -2.4180 -4.5572 19 6 9.2085 -4.1828 0.7360 20 6 7.9162 -4.8743 1.1780 21 6 5.4536 -1.7229 0.0119 22 6 3.9252 -1.7028 0.0886 23 1 -0.3633 0.5139 0.8899 24 1 -0.3633 0.5137 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 1.8934 -0.5138 -0.8899 27 1 3.1300 1.4426 0.0005 28 1 1.6767 1.9563 -0.8900 29 1 1.6766 1.9564 0.8899 30 1 1.6054 -1.7196 1.2953 31 1 1.7516 -0.1582 2.1370 32 1 3.6830 -2.3022 2.6762 33 1 3.7348 -0.6245 3.2696 34 1 5.9848 -1.6924 3.3338 35 1 5.9474 -0.3064 2.2174 36 1 7.8629 -2.3791 2.2450 37 1 7.8728 -1.4105 0.7518 38 1 8.5583 -0.7427 -1.9816 39 1 9.7558 -4.6235 -0.0972 40 1 9.8216 -3.7205 1.5096 41 1 7.6799 -4.8665 2.2420 42 1 7.6131 -5.7697 0.6355 43 1 5.8207 -0.7172 -0.1928 44 1 5.7689 -2.3949 -0.7863 45 1 3.5567 -2.7132 0.2662 46 1 3.5185 -1.3272 -0.8504 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000088259482.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:09:58 Heat of formation + Delta-G solvation = 16.683233 kcal Electronic energy + Delta-G solvation = -21949.298915 eV Core-core repulsion = 19066.870431 eV Total energy + Delta-G solvation = -2882.428484 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 266.205 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.39202 -38.63359 -36.84973 -34.44828 -34.17706 -31.66690 -29.32245 -27.92685 -27.70733 -26.07415 -24.39611 -23.80333 -22.84647 -20.88616 -20.83629 -20.39292 -18.07110 -17.07716 -16.67935 -16.19064 -15.87825 -15.80810 -15.74017 -15.28090 -15.01219 -14.67320 -14.47919 -14.04940 -13.56635 -13.46664 -13.21502 -13.08587 -12.95994 -12.78114 -12.67422 -12.40464 -12.25241 -12.10331 -12.00867 -11.93062 -11.81707 -11.67070 -11.47833 -11.23418 -11.09442 -10.75224 -10.38575 -9.88835 -9.21674 -8.90329 -8.05970 -6.07696 1.36959 1.42830 1.50485 2.41427 3.00740 3.07087 3.29007 3.76978 3.87298 4.07132 4.10040 4.22589 4.30069 4.35319 4.45905 4.52370 4.55231 4.65021 4.67478 4.73647 4.79343 4.83892 4.84959 4.86692 4.91794 4.98977 5.04042 5.05988 5.10328 5.15863 5.17279 5.25002 5.29395 5.42579 5.47424 5.53557 5.59566 5.61371 5.65164 5.88513 6.14744 6.22853 6.47235 6.51591 6.64823 6.89179 7.45965 8.96755 Molecular weight = 266.21amu Principal moments of inertia in cm(-1) A = 0.018508 B = 0.006683 C = 0.005429 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1512.526363 B = 4188.807103 C = 5156.266398 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.097 4.097 3 C -0.131 4.131 4 C 0.063 3.937 5 N -0.546 5.546 6 C 0.069 3.931 7 C 0.053 3.947 8 N -0.526 5.526 9 C 0.107 3.893 10 C 0.034 3.966 11 C -0.482 4.482 12 H 0.048 0.952 13 C 0.042 3.958 14 N -0.898 5.898 15 Si 0.919 3.081 16 H -0.264 1.264 17 H -0.276 1.276 18 H -0.285 1.285 19 C -0.195 4.195 20 C -0.179 4.179 21 C 0.054 3.946 22 C 0.066 3.934 23 H 0.064 0.936 24 H 0.060 0.940 25 H 0.055 0.945 26 H 0.054 0.946 27 H 0.040 0.960 28 H 0.051 0.949 29 H 0.059 0.941 30 H 0.031 0.969 31 H 0.085 0.915 32 H 0.036 0.964 33 H 0.095 0.905 34 H 0.081 0.919 35 H 0.015 0.985 36 H 0.042 0.958 37 H 0.037 0.963 38 H 0.258 0.742 39 H 0.064 0.936 40 H 0.072 0.928 41 H 0.084 0.916 42 H 0.072 0.928 43 H -0.006 1.006 44 H 0.110 0.890 45 H 0.031 0.969 46 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.990 3.491 5.904 14.689 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.116 4.116 3 C -0.189 4.189 4 C -0.064 4.064 5 N -0.271 5.271 6 C -0.059 4.059 7 C -0.075 4.075 8 N -0.250 5.250 9 C -0.021 4.021 10 C 0.033 3.967 11 C -0.520 4.520 12 H 0.066 0.934 13 C -0.159 4.159 14 N -0.536 5.536 15 Si 0.745 3.255 16 H -0.188 1.188 17 H -0.201 1.201 18 H -0.211 1.211 19 C -0.234 4.234 20 C -0.216 4.216 21 C -0.074 4.074 22 C -0.062 4.062 23 H 0.083 0.917 24 H 0.079 0.921 25 H 0.074 0.926 26 H 0.073 0.927 27 H 0.059 0.941 28 H 0.071 0.929 29 H 0.078 0.922 30 H 0.049 0.951 31 H 0.103 0.897 32 H 0.054 0.946 33 H 0.113 0.887 34 H 0.100 0.900 35 H 0.034 0.966 36 H 0.060 0.940 37 H 0.055 0.945 38 H 0.067 0.933 39 H 0.083 0.917 40 H 0.091 0.909 41 H 0.102 0.898 42 H 0.091 0.909 43 H 0.012 0.988 44 H 0.128 0.872 45 H 0.049 0.951 46 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -12.867 3.642 5.832 14.589 hybrid contribution 0.302 0.122 -1.107 1.154 sum -12.565 3.764 4.725 13.942 Atomic orbital electron populations 1.21754 0.93432 1.01965 1.02489 1.21159 0.96389 0.96761 0.97263 1.21641 1.00643 0.95263 1.01338 1.22203 0.86099 0.98898 0.99244 1.62178 1.10665 1.50253 1.03994 1.22072 0.93474 0.98848 0.91457 1.22221 0.95819 0.94306 0.95189 1.62032 1.10464 1.48698 1.03838 1.21344 0.86469 0.98477 0.95791 1.18929 0.94617 0.89587 0.93564 1.20571 1.33628 1.03612 0.94195 0.93353 1.25376 0.94565 0.95920 1.00029 1.70058 1.36541 1.08358 1.38683 0.86104 0.78811 0.78630 0.81944 1.18833 1.20111 1.21102 1.22821 0.91817 1.07084 1.01635 1.22758 1.02155 0.97580 0.99119 1.22604 0.92712 0.97762 0.94314 1.22137 0.95284 0.94184 0.94620 0.91672 0.92061 0.92620 0.92737 0.94062 0.92946 0.92192 0.95076 0.89667 0.94550 0.88670 0.90030 0.96628 0.93972 0.94499 0.93272 0.91737 0.90922 0.89790 0.90946 0.98753 0.87247 0.95098 0.91012 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.40 9.19 71.98 0.66 -1.74 16 2 C -0.10 -2.21 2.85 -10.79 -0.03 -2.24 16 3 C -0.13 -3.05 9.08 71.98 0.65 -2.40 16 4 C 0.06 1.53 4.35 86.31 0.38 1.90 16 5 N -0.55 -16.89 4.16 -895.72 -3.73 -20.61 16 6 C 0.07 2.04 5.61 86.31 0.48 2.52 16 7 C 0.05 1.86 5.57 86.31 0.48 2.35 16 8 N -0.53 -22.35 4.64 -895.71 -4.16 -26.51 16 9 C 0.11 5.00 4.77 86.30 0.41 5.41 16 10 C 0.03 1.65 1.77 -52.93 -0.09 1.56 16 11 C -0.48 -25.50 6.53 25.60 0.17 -25.33 16 12 H 0.05 2.61 7.82 -2.91 -0.02 2.59 16 13 C 0.04 2.20 3.66 84.65 0.31 2.51 16 14 N -0.90 -49.65 11.48 21.45 0.25 -49.41 16 15 Si 0.92 41.99 29.03 68.60 1.99 43.98 16 16 H -0.26 -11.74 7.11 99.48 0.71 -11.03 16 17 H -0.28 -12.35 7.11 99.48 0.71 -11.65 16 18 H -0.28 -13.03 7.11 99.48 0.71 -12.32 16 19 C -0.20 -8.95 9.95 30.62 0.30 -8.64 16 20 C -0.18 -7.72 9.95 30.62 0.30 -7.41 16 21 C 0.05 2.38 4.74 86.31 0.41 2.79 16 22 C 0.07 2.40 5.42 86.31 0.47 2.86 16 23 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 24 H 0.06 0.98 8.14 -2.39 -0.02 0.97 16 25 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 26 H 0.05 1.43 6.28 -2.39 -0.02 1.42 16 27 H 0.04 1.18 7.75 -2.39 -0.02 1.16 16 28 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 29 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 30 H 0.03 0.75 8.12 -2.39 -0.02 0.73 16 31 H 0.08 1.79 8.03 -2.39 -0.02 1.77 16 32 H 0.04 1.08 8.14 -2.39 -0.02 1.06 16 33 H 0.10 2.27 8.07 -2.39 -0.02 2.25 16 34 H 0.08 2.57 8.00 -2.39 -0.02 2.55 16 35 H 0.02 0.59 8.14 -2.39 -0.02 0.57 16 36 H 0.04 1.82 7.82 -2.39 -0.02 1.80 16 37 H 0.04 1.97 6.19 -2.38 -0.01 1.96 16 38 H 0.26 13.82 8.32 -92.71 -0.77 13.05 16 39 H 0.06 3.06 8.14 -2.39 -0.02 3.05 16 40 H 0.07 3.12 8.14 -2.39 -0.02 3.10 16 41 H 0.08 3.29 8.14 -2.39 -0.02 3.27 16 42 H 0.07 3.09 8.14 -2.39 -0.02 3.07 16 43 H -0.01 -0.29 8.14 -2.39 -0.02 -0.31 16 44 H 0.11 5.43 3.23 -2.39 -0.01 5.42 16 45 H 0.03 1.14 8.14 -2.39 -0.02 1.12 16 46 H 0.07 2.52 6.25 -2.38 -0.01 2.51 16 Total: -1.00 -56.31 345.78 0.16 -56.15 By element: Atomic # 1 Polarization: 21.35 SS G_CDS: 0.91 Total: 22.26 kcal Atomic # 6 Polarization: -30.76 SS G_CDS: 4.91 Total: -25.85 kcal Atomic # 7 Polarization: -88.89 SS G_CDS: -7.64 Total: -96.53 kcal Atomic # 14 Polarization: 41.99 SS G_CDS: 1.99 Total: 43.98 kcal Total: -56.31 0.16 -56.15 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088259482.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.831 kcal (2) G-P(sol) polarization free energy of solvation -56.311 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.520 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.163 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.148 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.683 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds