Wall clock time and date at job start Mon Mar 30 2020 00:41:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46897 * 109.47070 * 2 1 4 4 C 1.46903 * 111.00375 * 298.10868 * 3 2 1 5 5 C 1.50702 * 109.46903 * 292.92709 * 4 3 2 6 6 H 1.08003 * 120.00081 * 354.95634 * 5 4 3 7 7 C 1.37871 * 119.99954 * 174.95275 * 5 4 3 8 8 N 1.31520 * 120.00243 * 0.02562 * 7 5 4 9 9 Si 1.86799 * 120.00146 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.47038 * 0.02562 * 9 7 5 11 11 H 1.48494 * 109.47523 * 120.00323 * 9 7 5 12 12 H 1.48499 * 109.47095 * 240.00463 * 9 7 5 13 13 C 1.46907 * 111.00084 * 62.06259 * 3 2 1 14 14 C 1.50694 * 109.47206 * 66.04702 * 13 3 2 15 15 N 1.30836 * 125.95791 * 270.33277 * 14 13 3 16 16 C 1.33245 * 109.82465 * 180.12591 * 15 14 13 17 17 N 1.30710 * 108.94691 * 359.58279 * 16 15 14 18 18 N 1.34426 * 125.96129 * 90.00028 * 14 13 3 19 19 C 1.46496 * 126.82621 * 359.97438 * 18 14 13 20 20 C 1.52995 * 109.47225 * 270.01999 * 19 18 14 21 21 C 1.52999 * 109.47090 * 175.00119 * 20 19 18 22 22 C 1.53004 * 109.47143 * 294.99532 * 20 19 18 23 23 H 1.09003 * 109.47238 * 179.66010 * 1 2 3 24 24 H 1.09009 * 109.47157 * 299.65520 * 1 2 3 25 25 H 1.08999 * 109.47597 * 59.65592 * 1 2 3 26 26 H 1.08998 * 109.46933 * 240.00350 * 2 1 3 27 27 H 1.09000 * 109.47217 * 119.99739 * 2 1 3 28 28 H 1.09004 * 109.46858 * 52.92270 * 4 3 2 29 29 H 1.08999 * 109.47467 * 172.92516 * 4 3 2 30 30 H 0.97001 * 119.99709 * 179.97438 * 8 7 5 31 31 H 1.08999 * 109.46594 * 306.04233 * 13 3 2 32 32 H 1.08997 * 109.47078 * 186.04757 * 13 3 2 33 33 H 1.07997 * 125.52073 * 179.85596 * 16 15 14 34 34 H 1.08999 * 109.47283 * 30.01938 * 19 18 14 35 35 H 1.09000 * 109.47260 * 150.01832 * 19 18 14 36 36 H 1.08993 * 109.47596 * 54.99793 * 20 19 18 37 37 H 1.08992 * 109.47751 * 59.99897 * 21 20 19 38 38 H 1.09009 * 109.47034 * 180.02562 * 21 20 19 39 39 H 1.09001 * 109.46762 * 299.99098 * 21 20 19 40 40 H 1.09007 * 109.46643 * 60.00290 * 22 20 19 41 41 H 1.08995 * 109.47518 * 179.97438 * 22 20 19 42 42 H 1.09002 * 109.47285 * 300.00575 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.5859 2.0968 -1.2097 5 6 2.2656 1.4994 -2.4148 6 1 3.0116 0.7289 -2.2875 7 6 1.9349 1.9364 -3.6799 8 7 1.0267 2.8749 -3.8351 9 14 2.7767 1.1954 -5.1738 10 1 3.7514 0.1656 -4.7327 11 1 1.7594 0.5681 -6.0550 12 1 3.4883 2.2631 -5.9213 13 6 1.5893 2.0955 1.2117 14 6 2.2528 1.4807 2.4169 15 7 1.7815 0.4922 3.1327 16 6 2.6268 0.2078 4.1226 17 7 3.6565 1.0091 4.0448 18 7 3.4352 1.8482 2.9404 19 6 4.3182 2.9114 2.4546 20 6 5.2979 2.3332 1.4317 21 6 6.1364 3.4641 0.8327 22 6 6.2196 1.3253 2.1213 23 1 -0.3634 -1.0277 -0.0061 24 1 -0.3634 0.5085 0.8931 25 1 -0.3634 0.5191 -0.8868 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 0.5054 2.0034 -1.3184 29 1 1.8531 3.1503 -1.1269 30 1 0.7943 3.1826 -4.7252 31 1 0.5069 2.0175 1.3134 32 1 1.8725 3.1454 1.1370 33 1 2.4862 -0.5630 4.8659 34 1 3.7213 3.6930 1.9846 35 1 4.8741 3.3330 3.2921 36 1 4.7421 1.8335 0.6383 37 1 6.6923 3.9638 1.6259 38 1 6.8341 3.0522 0.1034 39 1 5.4797 4.1821 0.3412 40 1 5.6222 0.5195 2.5481 41 1 6.9173 0.9130 1.3925 42 1 6.7755 1.8249 2.9147 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000088593033.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:41:40 Heat of formation + Delta-G solvation = 82.501485 kcal Electronic energy + Delta-G solvation = -21404.642909 eV Core-core repulsion = 18421.528175 eV Total energy + Delta-G solvation = -2983.114734 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.180 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.85203 -37.28260 -36.51281 -32.78083 -32.36809 -31.38013 -29.42758 -27.73446 -27.04655 -26.40099 -24.90984 -23.14397 -21.73363 -20.92665 -20.08913 -18.91127 -16.78634 -16.23230 -15.75572 -15.43735 -14.84943 -14.70435 -14.22273 -14.13824 -13.75702 -13.52033 -13.09544 -12.88398 -12.38605 -12.22258 -12.03636 -11.81743 -11.69377 -11.42033 -11.22297 -11.14835 -10.94902 -10.87580 -10.72484 -10.60518 -10.53507 -10.05057 -9.85142 -9.67507 -9.36968 -9.32740 -9.16283 -8.48302 -7.33705 -6.07956 -4.08775 1.89181 2.57791 3.22447 3.27631 3.35918 3.40530 4.35363 4.44905 4.63986 4.84500 5.00718 5.02849 5.16507 5.21740 5.28475 5.43921 5.49385 5.71441 5.76452 5.85292 5.89329 5.94767 5.96287 6.04166 6.12657 6.23906 6.25078 6.39117 6.47080 6.58574 6.63264 6.70055 6.73963 6.97741 7.09035 7.19843 7.38520 7.73406 7.97313 8.09143 8.42597 8.44298 8.99219 9.55709 11.02662 Molecular weight = 266.18amu Principal moments of inertia in cm(-1) A = 0.018090 B = 0.006447 C = 0.005289 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1547.486251 B = 4341.862308 C = 5292.289834 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.062 3.938 3 N -0.527 5.527 4 C 0.190 3.810 5 C -0.503 4.503 6 H 0.063 0.937 7 C 0.057 3.943 8 N -0.898 5.898 9 Si 0.895 3.105 10 H -0.272 1.272 11 H -0.285 1.285 12 H -0.284 1.284 13 C 0.120 3.880 14 C 0.305 3.695 15 N -0.546 5.546 16 C 0.189 3.811 17 N -0.330 5.330 18 N -0.363 5.363 19 C 0.137 3.863 20 C -0.116 4.116 21 C -0.140 4.140 22 C -0.140 4.140 23 H 0.047 0.953 24 H 0.049 0.951 25 H 0.065 0.935 26 H 0.079 0.921 27 H 0.058 0.942 28 H 0.008 0.992 29 H 0.026 0.974 30 H 0.261 0.739 31 H 0.068 0.932 32 H 0.086 0.914 33 H 0.210 0.790 34 H 0.096 0.904 35 H 0.089 0.911 36 H 0.102 0.898 37 H 0.050 0.950 38 H 0.061 0.939 39 H 0.061 0.939 40 H 0.056 0.944 41 H 0.053 0.947 42 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.235 -0.101 11.833 12.940 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C -0.067 4.067 3 N -0.252 5.252 4 C 0.065 3.935 5 C -0.541 4.541 6 H 0.081 0.919 7 C -0.144 4.144 8 N -0.538 5.538 9 Si 0.723 3.277 10 H -0.197 1.197 11 H -0.211 1.211 12 H -0.211 1.211 13 C -0.011 4.011 14 C 0.028 3.972 15 N -0.275 5.275 16 C -0.114 4.114 17 N -0.158 5.158 18 N -0.153 5.153 19 C 0.015 3.985 20 C -0.136 4.136 21 C -0.198 4.198 22 C -0.197 4.197 23 H 0.066 0.934 24 H 0.068 0.932 25 H 0.084 0.916 26 H 0.097 0.903 27 H 0.077 0.923 28 H 0.026 0.974 29 H 0.044 0.956 30 H 0.070 0.930 31 H 0.085 0.915 32 H 0.104 0.896 33 H 0.226 0.774 34 H 0.114 0.886 35 H 0.107 0.893 36 H 0.120 0.880 37 H 0.069 0.931 38 H 0.080 0.920 39 H 0.080 0.920 40 H 0.075 0.925 41 H 0.072 0.928 42 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 6.026 -0.117 12.110 13.527 hybrid contribution -0.481 -0.237 -0.968 1.106 sum 5.546 -0.354 11.142 12.451 Atomic orbital electron populations 1.22305 0.98920 1.01189 1.01774 1.21968 0.92643 0.90473 1.01568 1.62410 1.59217 1.02494 1.01113 1.19825 0.95200 0.93491 0.84952 1.21115 1.21876 1.21310 0.89838 0.91880 1.24948 0.95251 0.95231 0.99003 1.69958 1.31922 1.29137 1.22738 0.86488 0.79404 0.79091 0.82732 1.19702 1.21115 1.21059 1.20611 0.97560 0.97077 0.85878 1.24412 0.84920 0.92123 0.95708 1.70516 1.32498 1.16122 1.08327 1.25819 0.88663 0.99204 0.97728 1.77935 1.23975 1.07891 1.06015 1.50287 1.16109 1.27487 1.21422 1.21890 0.91966 0.86786 0.97864 1.21562 0.96411 0.97456 0.98130 1.21723 0.99792 0.97869 1.00457 1.21769 0.99058 0.99109 0.99810 0.93430 0.93211 0.91598 0.90279 0.92338 0.97413 0.95639 0.92968 0.91464 0.89566 0.77399 0.88606 0.89294 0.88006 0.93087 0.91961 0.91953 0.92506 0.92809 0.93195 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.36 9.26 37.16 0.34 -3.02 16 2 C 0.06 1.21 5.71 -3.83 -0.02 1.19 16 3 N -0.53 -10.50 4.69 -237.52 -1.11 -11.62 16 4 C 0.19 4.51 4.53 -4.97 -0.02 4.49 16 5 C -0.50 -13.26 8.40 -34.44 -0.29 -13.55 16 6 H 0.06 1.68 7.38 -52.48 -0.39 1.30 16 7 C 0.06 1.54 5.46 -17.82 -0.10 1.44 16 8 N -0.90 -25.46 13.29 55.43 0.74 -24.73 16 9 Si 0.89 20.99 29.54 -169.99 -5.02 15.97 16 10 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 11 H -0.28 -6.68 7.11 56.52 0.40 -6.27 16 12 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 13 C 0.12 2.05 5.08 -4.97 -0.03 2.02 16 14 C 0.31 5.09 6.62 -155.70 -1.03 4.06 16 15 N -0.55 -9.22 10.38 -11.97 -0.12 -9.35 16 16 C 0.19 2.80 13.03 -91.81 -1.20 1.60 16 17 N -0.33 -5.14 11.81 29.29 0.35 -4.79 16 18 N -0.36 -5.58 3.23 -58.35 -0.19 -5.77 16 19 C 0.14 1.75 5.69 -4.05 -0.02 1.73 16 20 C -0.12 -1.55 3.13 -90.62 -0.28 -1.83 16 21 C -0.14 -1.60 9.19 37.16 0.34 -1.26 16 22 C -0.14 -1.83 9.06 37.16 0.34 -1.49 16 23 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 24 H 0.05 0.87 6.34 -51.92 -0.33 0.55 16 25 H 0.07 1.35 6.28 -51.93 -0.33 1.02 16 26 H 0.08 1.68 6.98 -51.93 -0.36 1.32 16 27 H 0.06 1.13 6.61 -51.93 -0.34 0.79 16 28 H 0.01 0.21 6.01 -51.93 -0.31 -0.11 16 29 H 0.03 0.64 7.91 -51.93 -0.41 0.23 16 30 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 31 H 0.07 1.16 6.07 -51.93 -0.32 0.85 16 32 H 0.09 1.36 6.90 -51.93 -0.36 1.00 16 33 H 0.21 2.25 8.06 -52.49 -0.42 1.82 16 34 H 0.10 1.13 7.11 -51.93 -0.37 0.76 16 35 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 36 H 0.10 1.71 8.14 -51.93 -0.42 1.28 16 37 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 38 H 0.06 0.72 8.14 -51.92 -0.42 0.29 16 39 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 40 H 0.06 0.86 6.97 -51.92 -0.36 0.49 16 41 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 42 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 LS Contribution 335.45 15.07 5.06 5.06 Total: -1.00 -29.17 335.45 -9.09 -38.26 By element: Atomic # 1 Polarization: 8.40 SS G_CDS: -6.82 Total: 1.58 kcal Atomic # 6 Polarization: -2.65 SS G_CDS: -1.97 Total: -4.62 kcal Atomic # 7 Polarization: -55.91 SS G_CDS: -0.34 Total: -56.25 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.02 Total: 15.97 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -29.17 -9.09 -38.26 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088593033.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.766 kcal (2) G-P(sol) polarization free energy of solvation -29.174 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.593 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.091 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.265 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.501 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds