Wall clock time and date at job start Mon Mar 30 2020 00:38:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46497 * 109.47091 * 2 1 4 4 N 1.40441 * 126.82411 * 275.22995 * 3 2 1 5 5 C 1.30710 * 106.79257 * 180.25603 * 4 3 2 6 6 N 1.33242 * 108.94942 * 359.75445 * 5 4 3 7 7 C 1.30837 * 109.82721 * 359.97438 * 6 5 4 8 8 C 1.50701 * 125.96290 * 180.02562 * 7 6 5 9 9 N 1.46895 * 109.47145 * 273.22523 * 8 7 6 10 10 C 1.46900 * 111.00330 * 200.73488 * 9 8 7 11 11 C 1.50695 * 109.47278 * 160.47841 * 10 9 8 12 12 H 1.07998 * 120.00072 * 354.43103 * 11 10 9 13 13 C 1.37881 * 119.99881 * 174.42626 * 11 10 9 14 14 N 1.31518 * 119.99830 * 0.02562 * 13 11 10 15 15 Si 1.86797 * 119.99996 * 180.02562 * 13 11 10 16 16 H 1.48500 * 109.47181 * 90.00223 * 15 13 11 17 17 H 1.48503 * 109.46837 * 209.99658 * 15 13 11 18 18 H 1.48493 * 109.47124 * 329.99832 * 15 13 11 19 19 C 1.46896 * 110.99966 * 76.77607 * 9 8 7 20 20 C 1.53001 * 109.47181 * 197.26908 * 19 9 8 21 21 C 1.52995 * 109.47027 * 59.09132 * 20 19 9 22 22 C 1.53009 * 109.47156 * 179.08568 * 20 19 9 23 23 H 1.08999 * 109.47251 * 304.95395 * 1 2 3 24 24 H 1.09004 * 109.47457 * 64.95543 * 1 2 3 25 25 H 1.09007 * 109.47396 * 184.95974 * 1 2 3 26 26 H 1.09004 * 109.46552 * 240.00194 * 2 1 3 27 27 H 1.09000 * 109.46769 * 120.00524 * 2 1 3 28 28 H 1.08006 * 125.53161 * 179.71074 * 5 4 3 29 29 H 1.09003 * 109.46496 * 153.22480 * 8 7 6 30 30 H 1.09001 * 109.47071 * 33.22774 * 8 7 6 31 31 H 1.08999 * 109.46826 * 280.48232 * 10 9 8 32 32 H 1.08995 * 109.47054 * 40.47601 * 10 9 8 33 33 H 0.96996 * 119.99650 * 180.02562 * 14 13 11 34 34 H 1.08999 * 109.47617 * 317.27035 * 19 9 8 35 35 H 1.09009 * 109.47056 * 77.27165 * 19 9 8 36 36 H 1.08996 * 109.47549 * 299.08394 * 20 19 9 37 37 H 1.09002 * 109.47058 * 180.02562 * 21 20 19 38 38 H 1.09004 * 109.47130 * 299.99523 * 21 20 19 39 39 H 1.08994 * 109.47737 * 59.99778 * 21 20 19 40 40 H 1.09005 * 109.46394 * 60.00153 * 22 20 19 41 41 H 1.08992 * 109.46997 * 179.97438 * 22 20 19 42 42 H 1.09000 * 109.47143 * 300.00594 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 7 2.2023 2.2090 -1.1195 5 6 2.6554 3.3513 -0.6742 6 7 2.7597 3.2877 0.6526 7 6 2.3759 2.1093 1.0720 8 6 2.3463 1.6467 2.5060 9 7 3.6598 1.0997 2.8712 10 6 3.5552 0.2142 4.0386 11 6 4.7643 -0.6833 4.0983 12 1 5.4887 -0.6673 3.2975 13 6 4.9459 -1.5246 5.1755 14 7 4.0635 -1.5443 6.1506 15 14 6.4450 -2.6365 5.2499 16 1 7.5548 -1.9261 5.9347 17 1 6.1085 -3.8713 6.0031 18 1 6.8635 -2.9961 3.8713 19 6 4.6298 2.1761 3.1121 20 6 6.0483 1.6049 3.0625 21 6 6.2942 0.9685 1.6932 22 6 7.0596 2.7303 3.2908 23 1 -0.3634 0.5888 0.8423 24 1 -0.3634 0.4350 -0.9311 25 1 -0.3634 -1.0239 0.0889 26 1 1.8933 -0.5138 -0.8901 27 1 1.8933 -0.5139 0.8900 28 1 2.9054 4.2077 -1.2830 29 1 1.5858 0.8746 2.6229 30 1 2.1106 2.4900 3.1550 31 1 3.5033 0.8148 4.9467 32 1 2.6549 -0.3943 3.9536 33 1 4.1914 -2.1359 6.9085 34 1 4.5199 2.9428 2.3451 35 1 4.4491 2.6153 4.0933 36 1 6.1634 0.8499 3.8401 37 1 7.3047 0.5612 1.6580 38 1 5.5739 0.1668 1.5305 39 1 6.1793 1.7235 0.9156 40 1 6.8843 3.1837 4.2665 41 1 8.0701 2.3233 3.2560 42 1 6.9445 3.4854 2.5133 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000088593063.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:38:52 Heat of formation + Delta-G solvation = 84.558927 kcal Electronic energy + Delta-G solvation = -21429.174222 eV Core-core repulsion = 18446.148706 eV Total energy + Delta-G solvation = -2983.025516 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.180 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.78886 -37.55538 -34.89597 -33.82826 -32.75173 -31.03332 -29.99435 -27.64382 -26.40441 -26.39085 -24.24653 -23.56718 -21.52461 -21.09620 -19.78143 -18.98461 -16.92686 -16.28300 -15.75640 -15.03582 -14.81196 -14.59110 -14.20390 -13.88435 -13.75037 -13.55160 -12.90025 -12.71257 -12.46451 -12.22716 -12.17713 -11.90545 -11.69488 -11.53629 -11.25365 -11.08088 -11.04130 -10.74455 -10.54827 -10.16612 -10.11300 -9.95251 -9.69542 -9.51339 -9.43001 -9.18414 -9.07986 -8.43407 -7.41119 -6.08149 -4.06320 1.91095 2.57875 3.23713 3.28059 3.35397 3.39013 4.35305 4.45229 4.67111 4.93779 4.99075 5.05537 5.20774 5.26291 5.32258 5.61510 5.65417 5.71629 5.77083 5.87053 5.94502 6.01741 6.04533 6.20362 6.34144 6.43658 6.50697 6.57457 6.61060 6.72697 6.75969 6.85823 7.08666 7.09995 7.21081 7.26637 7.46607 7.79343 7.99708 8.09017 8.43305 8.44137 9.00274 9.55201 11.02206 Molecular weight = 266.18amu Principal moments of inertia in cm(-1) A = 0.018569 B = 0.006541 C = 0.005503 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1507.526336 B = 4279.962881 C = 5087.158287 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.122 3.878 3 N -0.366 5.366 4 N -0.334 5.334 5 C 0.192 3.808 6 N -0.548 5.548 7 C 0.309 3.691 8 C 0.124 3.876 9 N -0.530 5.530 10 C 0.193 3.807 11 C -0.506 4.506 12 H 0.080 0.920 13 C 0.056 3.944 14 N -0.898 5.898 15 Si 0.891 3.109 16 H -0.280 1.280 17 H -0.288 1.288 18 H -0.272 1.272 19 C 0.074 3.926 20 C -0.107 4.107 21 C -0.125 4.125 22 C -0.143 4.143 23 H 0.060 0.940 24 H 0.061 0.939 25 H 0.078 0.922 26 H 0.093 0.907 27 H 0.110 0.890 28 H 0.210 0.790 29 H 0.089 0.911 30 H 0.063 0.937 31 H 0.002 0.998 32 H 0.024 0.976 33 H 0.261 0.739 34 H 0.066 0.934 35 H 0.024 0.976 36 H 0.115 0.885 37 H 0.033 0.967 38 H 0.070 0.930 39 H 0.030 0.970 40 H 0.047 0.953 41 H 0.046 0.954 42 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.729 5.062 -9.134 11.089 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.000 4.000 3 N -0.157 5.157 4 N -0.162 5.162 5 C -0.111 4.111 6 N -0.277 5.277 7 C 0.032 3.968 8 C -0.007 4.007 9 N -0.255 5.255 10 C 0.068 3.932 11 C -0.544 4.544 12 H 0.098 0.902 13 C -0.146 4.146 14 N -0.537 5.537 15 Si 0.718 3.282 16 H -0.207 1.207 17 H -0.214 1.214 18 H -0.197 1.197 19 C -0.054 4.054 20 C -0.125 4.125 21 C -0.183 4.183 22 C -0.201 4.201 23 H 0.079 0.921 24 H 0.080 0.920 25 H 0.097 0.903 26 H 0.111 0.889 27 H 0.128 0.872 28 H 0.226 0.774 29 H 0.107 0.893 30 H 0.081 0.919 31 H 0.020 0.980 32 H 0.042 0.958 33 H 0.070 0.930 34 H 0.084 0.916 35 H 0.043 0.957 36 H 0.133 0.867 37 H 0.052 0.948 38 H 0.088 0.912 39 H 0.049 0.951 40 H 0.066 0.934 41 H 0.066 0.934 42 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -3.657 4.696 -9.913 11.562 hybrid contribution 0.470 -0.247 0.855 1.006 sum -3.188 4.448 -9.058 10.583 Atomic orbital electron populations 1.22157 0.94333 1.03162 1.02817 1.21809 0.94967 0.77685 1.05512 1.50304 1.48657 1.12620 1.04071 1.77913 1.25468 1.03794 1.09048 1.25797 0.98059 0.96430 0.90849 1.70473 1.25765 1.20101 1.11323 1.24471 0.92606 0.86868 0.92853 1.20556 0.95298 0.99487 0.85382 1.62032 1.03687 1.18325 1.41467 1.19858 0.97960 0.90560 0.84789 1.21387 1.07460 1.20073 1.05487 0.90235 1.24981 0.96571 0.97268 0.95743 1.69953 1.35265 1.38928 1.09569 0.86604 0.83088 0.80235 0.78227 1.20656 1.21352 1.19720 1.22044 0.92382 0.92399 0.98598 1.21510 0.92780 0.98188 1.00048 1.21609 1.00036 1.00477 0.96133 1.21827 0.99019 0.98748 1.00505 0.92053 0.92011 0.90291 0.88899 0.87193 0.77382 0.89289 0.91853 0.98023 0.95802 0.92953 0.91593 0.95738 0.86735 0.94780 0.91151 0.95056 0.93422 0.93449 0.93908 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.72 10.24 37.16 0.38 -1.34 16 2 C 0.12 1.55 6.92 -4.04 -0.03 1.52 16 3 N -0.37 -5.75 3.64 -58.34 -0.21 -5.96 16 4 N -0.33 -5.39 12.70 29.29 0.37 -5.02 16 5 C 0.19 2.91 13.03 -91.81 -1.20 1.72 16 6 N -0.55 -9.42 10.28 -11.96 -0.12 -9.54 16 7 C 0.31 5.21 7.04 -155.68 -1.10 4.11 16 8 C 0.12 2.11 5.14 -4.98 -0.03 2.08 16 9 N -0.53 -10.45 3.58 -237.52 -0.85 -11.30 16 10 C 0.19 4.51 4.76 -4.98 -0.02 4.49 16 11 C -0.51 -12.83 6.88 -34.44 -0.24 -13.07 16 12 H 0.08 1.99 4.46 -52.49 -0.23 1.76 16 13 C 0.06 1.48 5.46 -17.82 -0.10 1.38 16 14 N -0.90 -25.12 13.29 55.43 0.74 -24.38 16 15 Si 0.89 20.66 29.54 -169.99 -5.02 15.64 16 16 H -0.28 -6.49 7.11 56.52 0.40 -6.08 16 17 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 18 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 19 C 0.07 1.43 4.24 -3.83 -0.02 1.41 16 20 C -0.11 -2.06 2.39 -90.62 -0.22 -2.27 16 21 C -0.13 -2.35 8.31 37.15 0.31 -2.04 16 22 C -0.14 -2.36 9.19 37.16 0.34 -2.02 16 23 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 24 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 25 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16 26 H 0.09 1.09 8.14 -51.93 -0.42 0.66 16 27 H 0.11 1.44 7.42 -51.93 -0.39 1.06 16 28 H 0.21 2.31 8.06 -52.48 -0.42 1.89 16 29 H 0.09 1.38 6.95 -51.93 -0.36 1.02 16 30 H 0.06 1.06 7.98 -51.93 -0.41 0.65 16 31 H 0.00 0.05 7.77 -51.93 -0.40 -0.35 16 32 H 0.02 0.58 7.59 -51.93 -0.39 0.19 16 33 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 34 H 0.07 1.26 6.65 -51.93 -0.35 0.92 16 35 H 0.02 0.49 7.79 -51.92 -0.40 0.09 16 36 H 0.11 2.56 4.99 -51.93 -0.26 2.30 16 37 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 38 H 0.07 1.45 6.57 -51.93 -0.34 1.11 16 39 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 40 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 41 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 42 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 LS Contribution 335.75 15.07 5.06 5.06 Total: -1.00 -29.07 335.75 -8.85 -37.92 By element: Atomic # 1 Polarization: 8.52 SS G_CDS: -6.91 Total: 1.61 kcal Atomic # 6 Polarization: -2.13 SS G_CDS: -1.91 Total: -4.03 kcal Atomic # 7 Polarization: -56.13 SS G_CDS: -0.08 Total: -56.20 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -5.02 Total: 15.64 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -29.07 -8.85 -37.92 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088593063.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.477 kcal (2) G-P(sol) polarization free energy of solvation -29.070 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.407 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.848 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.918 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.559 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds