Wall clock time and date at job start Mon Mar 30 2020 00:35:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.47267 * 2 1 4 4 N 1.46493 * 109.47301 * 185.71857 * 3 2 1 5 5 C 1.36939 * 119.99832 * 96.41026 * 4 3 2 6 6 H 1.08001 * 120.00119 * 174.21686 * 5 4 3 7 7 C 1.38810 * 120.00166 * 354.22807 * 5 4 3 8 8 N 1.31622 * 119.99938 * 329.68743 * 7 5 4 9 9 Si 1.86797 * 120.00215 * 149.69103 * 7 5 4 10 10 H 1.48501 * 109.47441 * 94.99131 * 9 7 5 11 11 H 1.48505 * 109.47235 * 214.98862 * 9 7 5 12 12 H 1.48495 * 109.47108 * 334.98892 * 9 7 5 13 13 C 1.46499 * 120.00217 * 276.41356 * 4 3 2 14 14 C 1.50709 * 109.46989 * 275.40286 * 13 4 3 15 15 N 1.30825 * 125.95869 * 84.21190 * 14 13 4 16 16 C 1.33249 * 109.82658 * 180.12165 * 15 14 13 17 17 N 1.30706 * 108.94320 * 359.59570 * 16 15 14 18 18 N 1.34423 * 125.95970 * 263.88853 * 14 13 4 19 19 C 1.46501 * 126.82649 * 359.97438 * 18 14 13 20 20 C 1.53008 * 109.47174 * 266.39086 * 19 18 14 21 21 C 1.52998 * 109.46934 * 173.60544 * 20 19 18 22 22 C 1.52995 * 109.46796 * 293.60630 * 20 19 18 23 23 H 1.08997 * 109.47055 * 304.90070 * 1 2 3 24 24 H 1.09007 * 109.47297 * 64.90016 * 1 2 3 25 25 H 1.09009 * 109.47215 * 184.89718 * 1 2 3 26 26 H 1.09004 * 109.47103 * 239.99900 * 2 1 3 27 27 H 1.09002 * 109.46853 * 120.00288 * 2 1 3 28 28 H 1.09007 * 109.46552 * 65.71713 * 3 2 1 29 29 H 1.09002 * 109.47063 * 305.72353 * 3 2 1 30 30 H 0.97001 * 120.00256 * 180.02562 * 8 7 5 31 31 H 1.09003 * 109.47334 * 155.40163 * 13 4 3 32 32 H 1.09000 * 109.47182 * 35.39769 * 13 4 3 33 33 H 1.07995 * 125.52390 * 179.85657 * 16 15 14 34 34 H 1.09004 * 109.46860 * 26.38415 * 19 18 14 35 35 H 1.08999 * 109.47527 * 146.38533 * 19 18 14 36 36 H 1.08994 * 109.46794 * 53.60538 * 20 19 18 37 37 H 1.09003 * 109.46849 * 64.79667 * 21 20 19 38 38 H 1.09007 * 109.46804 * 184.78604 * 21 20 19 39 39 H 1.08991 * 109.47452 * 304.79122 * 21 20 19 40 40 H 1.08997 * 109.47131 * 179.97438 * 22 20 19 41 41 H 1.09005 * 109.47439 * 300.00301 * 22 20 19 42 42 H 1.08997 * 109.47304 * 59.99795 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.4985 1.4448 -0.1376 5 6 4.0696 1.6173 -1.3702 6 1 5.1416 1.7126 -1.4601 7 6 3.2707 1.6700 -2.5041 8 7 2.1367 1.0029 -2.5418 9 14 3.8049 2.6876 -3.9767 10 1 4.5140 1.8173 -4.9489 11 1 2.6100 3.2839 -4.6261 12 1 4.7155 3.7705 -3.5259 13 6 4.3460 1.2624 1.0433 14 6 4.5445 2.5897 1.7290 15 7 3.7285 3.1382 2.5920 16 6 4.2165 4.3116 2.9928 17 7 5.3591 4.5228 2.3941 18 7 5.5939 3.4137 1.5650 19 6 6.7528 3.1973 0.6955 20 6 7.8779 2.5417 1.4989 21 6 9.0265 2.1706 0.5587 22 6 8.3837 3.5205 2.5604 23 1 -0.3633 0.5880 0.8428 24 1 -0.3634 0.4360 -0.9307 25 1 -0.3634 -1.0240 0.0877 26 1 1.8933 -0.5139 -0.8900 27 1 1.8933 -0.5139 0.8900 28 1 1.7626 1.9259 0.9368 29 1 1.5954 1.9851 -0.8343 30 1 1.5786 1.0393 -3.3343 31 1 5.3132 0.8628 0.7383 32 1 3.8658 0.5664 1.7312 33 1 3.7465 4.9778 3.7010 34 1 6.4699 2.5461 -0.1316 35 1 7.0965 4.1544 0.3031 36 1 7.5007 1.6418 1.9846 37 1 9.4594 3.0783 0.1381 38 1 9.7907 1.6279 1.1153 39 1 8.6480 1.5414 -0.2467 40 1 9.1848 3.0534 3.1331 41 1 8.7608 4.4205 2.0747 42 1 7.5654 3.7849 3.2301 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000088593069.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:35:23 Heat of formation + Delta-G solvation = 97.671101 kcal Electronic energy + Delta-G solvation = -21381.839661 eV Core-core repulsion = 18399.382731 eV Total energy + Delta-G solvation = -2982.456930 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.180 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.44505 -36.57565 -36.26143 -32.47870 -31.93558 -31.86776 -30.06688 -27.15812 -26.81231 -25.82706 -25.49079 -22.15492 -21.45714 -20.62700 -20.08769 -19.21220 -16.80465 -16.48417 -15.55157 -15.20868 -14.85478 -14.06191 -13.89733 -13.79554 -13.39433 -13.35113 -13.09883 -12.97082 -12.35765 -12.16642 -12.12201 -11.69129 -11.57375 -11.31607 -11.01429 -10.95764 -10.90193 -10.78535 -10.69730 -10.46668 -10.12251 -10.10529 -9.86819 -9.35881 -9.20167 -9.08357 -8.84977 -8.39974 -7.09523 -5.94357 -3.18138 2.25922 2.88701 3.30763 3.41537 3.43520 3.59697 4.42530 4.74921 4.80083 4.84969 4.99236 5.21706 5.23664 5.46250 5.50015 5.54133 5.60767 5.71739 5.79068 5.86044 5.92859 6.04101 6.20941 6.23293 6.26961 6.31062 6.32413 6.38511 6.56434 6.80273 6.91310 6.95468 7.08169 7.20259 7.24837 7.47317 7.55258 7.74516 8.00317 8.20475 8.79386 9.08017 9.71176 10.16771 11.10572 Molecular weight = 266.18amu Principal moments of inertia in cm(-1) A = 0.015747 B = 0.007325 C = 0.005834 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1777.687494 B = 3821.405292 C = 4798.576046 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.122 4.122 3 C 0.168 3.832 4 N -0.578 5.578 5 C -0.272 4.272 6 H 0.073 0.927 7 C 0.015 3.985 8 N -0.873 5.873 9 Si 0.882 3.118 10 H -0.288 1.288 11 H -0.288 1.288 12 H -0.281 1.281 13 C 0.218 3.782 14 C 0.285 3.715 15 N -0.552 5.552 16 C 0.185 3.815 17 N -0.342 5.342 18 N -0.369 5.369 19 C 0.132 3.868 20 C -0.111 4.111 21 C -0.144 4.144 22 C -0.143 4.143 23 H 0.033 0.967 24 H 0.052 0.948 25 H 0.032 0.968 26 H 0.091 0.909 27 H 0.019 0.981 28 H 0.019 0.981 29 H 0.084 0.916 30 H 0.254 0.746 31 H 0.070 0.930 32 H 0.074 0.926 33 H 0.205 0.795 34 H 0.107 0.893 35 H 0.087 0.913 36 H 0.075 0.925 37 H 0.057 0.943 38 H 0.059 0.941 39 H 0.062 0.938 40 H 0.050 0.950 41 H 0.054 0.946 42 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.810 1.077 6.961 10.517 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.161 4.161 3 C 0.043 3.957 4 N -0.297 5.297 5 C -0.400 4.400 6 H 0.091 0.909 7 C -0.185 4.185 8 N -0.516 5.516 9 Si 0.710 3.290 10 H -0.215 1.215 11 H -0.214 1.214 12 H -0.207 1.207 13 C 0.085 3.915 14 C 0.005 3.995 15 N -0.281 5.281 16 C -0.118 4.118 17 N -0.171 5.171 18 N -0.159 5.159 19 C 0.009 3.991 20 C -0.130 4.130 21 C -0.202 4.202 22 C -0.201 4.201 23 H 0.052 0.948 24 H 0.072 0.928 25 H 0.051 0.949 26 H 0.109 0.891 27 H 0.038 0.962 28 H 0.037 0.963 29 H 0.102 0.898 30 H 0.065 0.935 31 H 0.088 0.912 32 H 0.092 0.908 33 H 0.221 0.779 34 H 0.125 0.875 35 H 0.106 0.894 36 H 0.093 0.907 37 H 0.076 0.924 38 H 0.078 0.922 39 H 0.081 0.919 40 H 0.069 0.931 41 H 0.073 0.927 42 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 7.862 1.540 6.954 10.608 hybrid contribution 0.212 0.668 -0.964 1.192 sum 8.074 2.208 5.989 10.293 Atomic orbital electron populations 1.21594 0.98188 0.99080 1.00512 1.21924 0.93346 1.00205 1.00656 1.20919 0.81545 0.94783 0.98472 1.44098 1.01725 1.82585 1.01288 1.19093 0.92021 1.45646 0.83265 0.90917 1.24639 0.97124 0.99576 0.97162 1.70257 1.14736 1.38060 1.28515 0.86616 0.77845 0.81461 0.83052 1.21541 1.21444 1.20708 1.19347 0.96620 0.86141 0.89397 1.26745 0.83290 0.97392 0.92047 1.70497 1.30902 1.09748 1.16918 1.25750 0.91453 0.94805 0.99824 1.77817 1.20017 1.08390 1.10833 1.50268 1.17894 1.14396 1.33297 1.21915 0.83035 1.02647 0.91509 1.21505 0.95317 0.99214 0.96986 1.21773 0.97456 1.01687 0.99317 1.21809 1.01018 0.98601 0.98635 0.94790 0.92845 0.94878 0.89101 0.96212 0.96287 0.89766 0.93529 0.91158 0.90824 0.77900 0.87508 0.89418 0.90678 0.92434 0.92227 0.91863 0.93082 0.92729 0.91966 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.61 9.91 37.16 0.37 -2.24 16 2 C -0.12 -2.66 5.70 -26.73 -0.15 -2.81 16 3 C 0.17 3.95 4.90 -4.05 -0.02 3.93 16 4 N -0.58 -13.44 2.52 -174.61 -0.44 -13.88 16 5 C -0.27 -6.80 9.64 -15.06 -0.15 -6.94 16 6 H 0.07 1.73 6.68 -52.49 -0.35 1.38 16 7 C 0.01 0.38 4.79 -17.43 -0.08 0.29 16 8 N -0.87 -23.04 9.04 55.49 0.50 -22.54 16 9 Si 0.88 20.56 29.65 -169.99 -5.04 15.53 16 10 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 11 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 12 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 13 C 0.22 4.28 5.90 -5.19 -0.03 4.25 16 14 C 0.28 5.62 7.56 -155.70 -1.18 4.44 16 15 N -0.55 -11.14 11.19 -11.97 -0.13 -11.27 16 16 C 0.18 3.30 13.03 -91.81 -1.20 2.10 16 17 N -0.34 -6.29 11.60 29.29 0.34 -5.95 16 18 N -0.37 -6.71 3.32 -58.33 -0.19 -6.91 16 19 C 0.13 2.00 5.54 -4.04 -0.02 1.97 16 20 C -0.11 -1.37 3.12 -90.62 -0.28 -1.65 16 21 C -0.14 -1.46 9.19 37.16 0.34 -1.12 16 22 C -0.14 -1.74 9.05 37.15 0.34 -1.41 16 23 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 24 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 25 H 0.03 0.57 8.14 -51.92 -0.42 0.14 16 26 H 0.09 2.25 6.67 -51.93 -0.35 1.90 16 27 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 28 H 0.02 0.45 8.12 -51.92 -0.42 0.02 16 29 H 0.08 2.23 5.82 -51.93 -0.30 1.93 16 30 H 0.25 6.60 8.31 -40.82 -0.34 6.26 16 31 H 0.07 1.26 7.25 -51.93 -0.38 0.88 16 32 H 0.07 1.40 8.11 -51.93 -0.42 0.98 16 33 H 0.20 2.78 8.06 -52.49 -0.42 2.35 16 34 H 0.11 1.71 6.11 -51.93 -0.32 1.39 16 35 H 0.09 1.29 8.14 -51.93 -0.42 0.87 16 36 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 37 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 38 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 39 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 40 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 41 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 42 H 0.06 0.90 6.84 -51.93 -0.36 0.54 16 LS Contribution 338.48 15.07 5.10 5.10 Total: -1.00 -28.28 338.48 -9.03 -37.31 By element: Atomic # 1 Polarization: 8.90 SS G_CDS: -7.10 Total: 1.80 kcal Atomic # 6 Polarization: 2.88 SS G_CDS: -2.06 Total: 0.82 kcal Atomic # 7 Polarization: -60.62 SS G_CDS: 0.07 Total: -60.55 kcal Atomic # 14 Polarization: 20.56 SS G_CDS: -5.04 Total: 15.53 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -28.28 -9.03 -37.31 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088593069.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.977 kcal (2) G-P(sol) polarization free energy of solvation -28.279 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 106.698 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.027 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.306 kcal (6) G-S(sol) free energy of system = (1) + (5) 97.671 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds