Wall clock time and date at job start Mon Mar 30 2020 00:35:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.47267 * 2 1 4 4 N 1.46493 * 109.47301 * 185.71857 * 3 2 1 5 5 C 1.36939 * 119.99832 * 96.41026 * 4 3 2 6 6 H 1.08001 * 120.00119 * 174.21686 * 5 4 3 7 7 C 1.38810 * 120.00166 * 354.22807 * 5 4 3 8 8 N 1.31622 * 119.99938 * 329.68743 * 7 5 4 9 9 Si 1.86797 * 120.00215 * 149.69103 * 7 5 4 10 10 H 1.48501 * 109.47441 * 94.99131 * 9 7 5 11 11 H 1.48505 * 109.47235 * 214.98862 * 9 7 5 12 12 H 1.48495 * 109.47108 * 334.98892 * 9 7 5 13 13 C 1.46499 * 120.00217 * 276.41356 * 4 3 2 14 14 C 1.50709 * 109.46989 * 275.40286 * 13 4 3 15 15 N 1.30825 * 125.95869 * 84.21190 * 14 13 4 16 16 C 1.33249 * 109.82658 * 180.12165 * 15 14 13 17 17 N 1.30706 * 108.94320 * 359.59570 * 16 15 14 18 18 N 1.34423 * 125.95970 * 263.88853 * 14 13 4 19 19 C 1.46501 * 126.82649 * 359.97438 * 18 14 13 20 20 C 1.53008 * 109.47174 * 266.39086 * 19 18 14 21 21 C 1.52998 * 109.46934 * 173.60544 * 20 19 18 22 22 C 1.52995 * 109.46796 * 293.60630 * 20 19 18 23 23 H 1.08997 * 109.47055 * 304.90070 * 1 2 3 24 24 H 1.09007 * 109.47297 * 64.90016 * 1 2 3 25 25 H 1.09009 * 109.47215 * 184.89718 * 1 2 3 26 26 H 1.09004 * 109.47103 * 239.99900 * 2 1 3 27 27 H 1.09002 * 109.46853 * 120.00288 * 2 1 3 28 28 H 1.09007 * 109.46552 * 65.71713 * 3 2 1 29 29 H 1.09002 * 109.47063 * 305.72353 * 3 2 1 30 30 H 0.97001 * 120.00256 * 180.02562 * 8 7 5 31 31 H 1.09003 * 109.47334 * 155.40163 * 13 4 3 32 32 H 1.09000 * 109.47182 * 35.39769 * 13 4 3 33 33 H 1.07995 * 125.52390 * 179.85657 * 16 15 14 34 34 H 1.09004 * 109.46860 * 26.38415 * 19 18 14 35 35 H 1.08999 * 109.47527 * 146.38533 * 19 18 14 36 36 H 1.08994 * 109.46794 * 53.60538 * 20 19 18 37 37 H 1.09003 * 109.46849 * 64.79667 * 21 20 19 38 38 H 1.09007 * 109.46804 * 184.78604 * 21 20 19 39 39 H 1.08991 * 109.47452 * 304.79122 * 21 20 19 40 40 H 1.08997 * 109.47131 * 179.97438 * 22 20 19 41 41 H 1.09005 * 109.47439 * 300.00301 * 22 20 19 42 42 H 1.08997 * 109.47304 * 59.99795 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.4985 1.4448 -0.1376 5 6 4.0696 1.6173 -1.3702 6 1 5.1416 1.7126 -1.4601 7 6 3.2707 1.6700 -2.5041 8 7 2.1367 1.0029 -2.5418 9 14 3.8049 2.6876 -3.9767 10 1 4.5140 1.8173 -4.9489 11 1 2.6100 3.2839 -4.6261 12 1 4.7155 3.7705 -3.5259 13 6 4.3460 1.2624 1.0433 14 6 4.5445 2.5897 1.7290 15 7 3.7285 3.1382 2.5920 16 6 4.2165 4.3116 2.9928 17 7 5.3591 4.5228 2.3941 18 7 5.5939 3.4137 1.5650 19 6 6.7528 3.1973 0.6955 20 6 7.8779 2.5417 1.4989 21 6 9.0265 2.1706 0.5587 22 6 8.3837 3.5205 2.5604 23 1 -0.3633 0.5880 0.8428 24 1 -0.3634 0.4360 -0.9307 25 1 -0.3634 -1.0240 0.0877 26 1 1.8933 -0.5139 -0.8900 27 1 1.8933 -0.5139 0.8900 28 1 1.7626 1.9259 0.9368 29 1 1.5954 1.9851 -0.8343 30 1 1.5786 1.0393 -3.3343 31 1 5.3132 0.8628 0.7383 32 1 3.8658 0.5664 1.7312 33 1 3.7465 4.9778 3.7010 34 1 6.4699 2.5461 -0.1316 35 1 7.0965 4.1544 0.3031 36 1 7.5007 1.6418 1.9846 37 1 9.4594 3.0783 0.1381 38 1 9.7907 1.6279 1.1153 39 1 8.6480 1.5414 -0.2467 40 1 9.1848 3.0534 3.1331 41 1 8.7608 4.4205 2.0747 42 1 7.5654 3.7849 3.2301 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000088593069.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:35:22 Heat of formation + Delta-G solvation = 85.141541 kcal Electronic energy + Delta-G solvation = -21382.382983 eV Core-core repulsion = 18399.382731 eV Total energy + Delta-G solvation = -2983.000252 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.180 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.88878 -38.13038 -37.59429 -34.03617 -33.71182 -33.30685 -31.68644 -28.32047 -28.05670 -27.37389 -27.13742 -23.90590 -22.82591 -22.05515 -21.55928 -20.66816 -18.66543 -17.88009 -17.15388 -16.48145 -16.34144 -15.73256 -15.42786 -15.30240 -14.88642 -14.82619 -14.51381 -14.18320 -13.80130 -13.52065 -13.44197 -13.12618 -12.87101 -12.72857 -12.61136 -12.57246 -12.30710 -12.20183 -11.97832 -11.95068 -11.84741 -11.72929 -11.63104 -11.06126 -10.81358 -10.50568 -10.32495 -10.28575 -8.96939 -7.88081 -5.11840 0.79764 1.43253 1.51447 1.54940 1.56477 2.11932 2.53671 3.20610 3.50401 3.58846 3.69511 3.77428 3.96392 4.07288 4.19555 4.40554 4.49760 4.54820 4.64264 4.67593 4.77901 4.81337 4.83590 4.93631 4.94246 4.99835 5.03011 5.15721 5.26078 5.32456 5.37850 5.46922 5.50910 5.53386 5.65586 5.70492 5.85274 6.04412 6.16330 6.28781 7.15085 7.34061 7.84126 8.27840 9.15703 Molecular weight = 266.18amu Principal moments of inertia in cm(-1) A = 0.015747 B = 0.007325 C = 0.005834 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1777.687494 B = 3821.405292 C = 4798.576046 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.112 4.112 3 C 0.177 3.823 4 N -0.591 5.591 5 C -0.271 4.271 6 H 0.082 0.918 7 C -0.032 4.032 8 N -0.893 5.893 9 Si 0.933 3.067 10 H -0.285 1.285 11 H -0.300 1.300 12 H -0.281 1.281 13 C 0.222 3.778 14 C 0.271 3.729 15 N -0.575 5.575 16 C 0.180 3.820 17 N -0.349 5.349 18 N -0.367 5.367 19 C 0.126 3.874 20 C -0.102 4.102 21 C -0.140 4.140 22 C -0.137 4.137 23 H 0.046 0.954 24 H 0.037 0.963 25 H 0.053 0.947 26 H 0.061 0.939 27 H 0.030 0.970 28 H 0.016 0.984 29 H 0.052 0.948 30 H 0.248 0.752 31 H 0.087 0.913 32 H 0.080 0.920 33 H 0.239 0.761 34 H 0.098 0.902 35 H 0.091 0.909 36 H 0.069 0.931 37 H 0.064 0.936 38 H 0.075 0.925 39 H 0.061 0.939 40 H 0.068 0.932 41 H 0.057 0.943 42 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.125 1.211 7.775 12.049 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.151 4.151 3 C 0.052 3.948 4 N -0.311 5.311 5 C -0.399 4.399 6 H 0.100 0.900 7 C -0.229 4.229 8 N -0.537 5.537 9 Si 0.763 3.237 10 H -0.212 1.212 11 H -0.227 1.227 12 H -0.207 1.207 13 C 0.090 3.910 14 C -0.008 4.008 15 N -0.304 5.304 16 C -0.122 4.122 17 N -0.177 5.177 18 N -0.157 5.157 19 C 0.004 3.996 20 C -0.122 4.122 21 C -0.197 4.197 22 C -0.195 4.195 23 H 0.065 0.935 24 H 0.056 0.944 25 H 0.072 0.928 26 H 0.079 0.921 27 H 0.049 0.951 28 H 0.034 0.966 29 H 0.071 0.929 30 H 0.057 0.943 31 H 0.105 0.895 32 H 0.098 0.902 33 H 0.255 0.745 34 H 0.116 0.884 35 H 0.109 0.891 36 H 0.088 0.912 37 H 0.083 0.917 38 H 0.094 0.906 39 H 0.080 0.920 40 H 0.087 0.913 41 H 0.077 0.923 42 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 9.216 1.678 7.780 12.177 hybrid contribution -0.143 0.662 -1.132 1.319 sum 9.073 2.340 6.647 11.488 Atomic orbital electron populations 1.21502 0.96242 1.00564 1.00252 1.21742 0.95072 0.98702 0.99589 1.20712 0.81999 0.95368 0.96724 1.44197 1.01925 1.83065 1.01905 1.19394 0.92491 1.44179 0.83876 0.90036 1.25182 0.97769 1.00756 0.99179 1.70372 1.15566 1.39155 1.28640 0.85797 0.76791 0.80172 0.80970 1.21241 1.22737 1.20677 1.19406 0.96888 0.86375 0.88288 1.26430 0.84102 0.97567 0.92750 1.70467 1.31563 1.10856 1.17500 1.26468 0.91188 0.94558 0.99989 1.77796 1.20422 1.08472 1.11059 1.50443 1.18179 1.13932 1.33122 1.22153 0.83022 1.02950 0.91466 1.21458 0.94990 0.98649 0.97086 1.21750 0.96816 1.02239 0.98925 1.21748 1.00622 0.98860 0.98235 0.93471 0.94373 0.92758 0.92065 0.95090 0.96561 0.92932 0.94269 0.89517 0.90237 0.74464 0.88413 0.89058 0.91226 0.91656 0.90590 0.92004 0.91254 0.92345 0.94386 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.79 9.91 71.98 0.71 -4.08 16 2 C -0.11 -4.84 5.70 30.59 0.17 -4.67 16 3 C 0.18 8.39 4.90 86.38 0.42 8.81 16 4 N -0.59 -27.37 2.52 -706.33 -1.78 -29.14 16 5 C -0.27 -13.44 9.64 84.03 0.81 -12.63 16 6 H 0.08 3.82 6.68 -2.91 -0.02 3.80 16 7 C -0.03 -1.64 4.79 84.86 0.41 -1.23 16 8 N -0.89 -47.98 9.04 21.65 0.20 -47.78 16 9 Si 0.93 42.65 29.65 68.60 2.03 44.68 16 10 H -0.29 -12.79 7.11 99.48 0.71 -12.08 16 11 H -0.30 -14.21 7.11 99.48 0.71 -13.50 16 12 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 13 C 0.22 8.53 5.90 85.64 0.51 9.04 16 14 C 0.27 10.46 7.56 138.23 1.04 11.50 16 15 N -0.57 -22.60 11.19 -191.78 -2.15 -24.74 16 16 C 0.18 6.17 13.03 180.76 2.36 8.52 16 17 N -0.35 -12.37 11.60 -61.25 -0.71 -13.09 16 18 N -0.37 -12.96 3.32 -338.47 -1.12 -14.08 16 19 C 0.13 3.65 5.54 86.38 0.48 4.13 16 20 C -0.10 -2.33 3.12 -10.79 -0.03 -2.36 16 21 C -0.14 -2.46 9.19 71.98 0.66 -1.80 16 22 C -0.14 -3.06 9.05 71.98 0.65 -2.41 16 23 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 24 H 0.04 1.53 8.14 -2.38 -0.02 1.51 16 25 H 0.05 1.78 8.14 -2.38 -0.02 1.76 16 26 H 0.06 3.05 6.67 -2.38 -0.02 3.04 16 27 H 0.03 1.24 8.14 -2.39 -0.02 1.22 16 28 H 0.02 0.76 8.12 -2.38 -0.02 0.74 16 29 H 0.05 2.83 5.82 -2.39 -0.01 2.82 16 30 H 0.25 13.17 8.31 -92.71 -0.77 12.40 16 31 H 0.09 3.00 7.25 -2.39 -0.02 2.98 16 32 H 0.08 2.95 8.11 -2.39 -0.02 2.93 16 33 H 0.24 5.96 8.06 -2.91 -0.02 5.93 16 34 H 0.10 3.01 6.11 -2.38 -0.01 3.00 16 35 H 0.09 2.57 8.14 -2.39 -0.02 2.55 16 36 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 37 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 38 H 0.08 1.12 8.14 -2.38 -0.02 1.10 16 39 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 40 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 41 H 0.06 1.24 8.14 -2.38 -0.02 1.23 16 42 H 0.04 1.03 6.84 -2.39 -0.02 1.02 16 Total: -1.00 -59.85 338.48 5.64 -54.21 By element: Atomic # 1 Polarization: 16.15 SS G_CDS: 0.98 Total: 17.12 kcal Atomic # 6 Polarization: 4.62 SS G_CDS: 8.19 Total: 12.81 kcal Atomic # 7 Polarization: -123.27 SS G_CDS: -5.56 Total: -128.83 kcal Atomic # 14 Polarization: 42.65 SS G_CDS: 2.03 Total: 44.68 kcal Total: -59.85 5.64 -54.21 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088593069.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.356 kcal (2) G-P(sol) polarization free energy of solvation -59.853 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.503 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.638 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.214 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.142 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds