Wall clock time and date at job start Mon Mar 30 2020 01:26:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09009 * 109.46696 * 2 1 4 4 C 1.52993 * 109.47393 * 240.00153 * 2 1 3 5 5 C 1.53001 * 109.47393 * 179.97438 * 4 2 1 6 6 C 1.52996 * 109.47208 * 59.99290 * 5 4 2 7 7 C 1.53002 * 109.47224 * 300.00343 * 6 5 4 8 8 H 1.08996 * 109.47185 * 299.99735 * 7 6 5 9 9 C 1.53002 * 109.46944 * 180.02562 * 7 6 5 10 10 N 1.46897 * 109.47483 * 64.06118 * 9 7 6 11 11 C 1.46893 * 111.00324 * 199.90574 * 10 9 7 12 12 C 1.53243 * 109.34121 * 172.75034 * 11 10 9 13 13 N 1.47078 * 108.52223 * 53.82821 * 12 11 10 14 14 C 1.36932 * 120.87871 * 128.79802 * 13 12 11 15 15 H 1.08011 * 119.99880 * 207.41764 * 14 13 12 16 16 C 1.38810 * 120.00474 * 27.41268 * 14 13 12 17 17 N 1.31621 * 119.99556 * 18.20328 * 16 14 13 18 18 Si 1.86801 * 120.00236 * 198.20375 * 16 14 13 19 19 H 1.48497 * 109.46818 * 94.98603 * 18 16 14 20 20 H 1.48505 * 109.46935 * 214.98241 * 18 16 14 21 21 H 1.48496 * 109.47369 * 334.98441 * 18 16 14 22 22 C 1.47078 * 118.23597 * 308.81871 * 13 12 11 23 23 C 1.46901 * 110.99603 * 75.60397 * 10 9 7 24 24 C 1.52996 * 109.47208 * 119.99443 * 2 1 3 25 25 H 1.08999 * 109.47446 * 300.00255 * 1 2 3 26 26 H 1.09001 * 109.47293 * 60.00759 * 1 2 3 27 27 H 1.09000 * 109.46509 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47645 * 59.99304 * 4 2 1 29 29 H 1.09000 * 109.46997 * 299.99338 * 4 2 1 30 30 H 1.09000 * 109.46509 * 299.99637 * 5 4 2 31 31 H 1.08994 * 109.47140 * 179.97438 * 5 4 2 32 32 H 1.09008 * 109.46931 * 180.02562 * 6 5 4 33 33 H 1.09000 * 109.47102 * 60.00710 * 6 5 4 34 34 H 1.08998 * 109.47223 * 184.06339 * 9 7 6 35 35 H 1.08999 * 109.47112 * 304.06207 * 9 7 6 36 36 H 1.09000 * 109.49394 * 292.70611 * 11 10 9 37 37 H 1.08997 * 109.49257 * 52.78790 * 11 10 9 38 38 H 1.09005 * 109.62374 * 294.11917 * 12 11 10 39 39 H 1.08996 * 109.63006 * 173.54526 * 12 11 10 40 40 H 0.97000 * 119.99734 * 179.97438 * 17 16 14 41 41 H 1.09006 * 109.63103 * 291.47043 * 22 13 12 42 42 H 1.09004 * 109.78831 * 170.98817 * 22 13 12 43 43 H 1.08996 * 109.49852 * 307.21396 * 23 10 9 44 44 H 1.09001 * 109.49355 * 67.29765 * 23 10 9 45 45 H 1.09000 * 109.47102 * 60.00710 * 24 2 1 46 46 H 1.08999 * 109.47163 * 300.00475 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0401 -0.7212 -1.2492 5 6 3.5701 -0.7206 -1.2495 6 6 4.0806 -1.4413 -0.0002 7 6 3.5705 -0.7200 1.2490 8 1 3.9335 0.3077 1.2487 9 6 4.0817 -1.4405 2.4983 10 7 5.5473 -1.3550 2.5477 11 6 6.1059 -2.3927 3.4245 12 6 7.6339 -2.3867 3.3084 13 7 8.1172 -1.0230 3.5726 14 6 9.1100 -0.7942 4.4876 15 1 9.1636 0.1549 5.0003 16 6 10.0475 -1.7820 4.7562 17 7 10.2164 -2.7763 3.9106 18 14 11.0692 -1.7001 6.3179 19 1 10.4246 -2.5204 7.3747 20 1 12.4316 -2.2249 6.0461 21 1 11.1638 -0.2902 6.7743 22 6 7.5056 0.0884 2.8285 23 6 5.9827 -0.0150 2.9635 24 6 2.0400 -0.7211 1.2493 25 1 -0.3634 0.5139 0.8899 26 1 -0.3634 0.5137 -0.8900 27 1 -0.3632 -1.0277 0.0005 28 1 1.6767 -0.2075 -2.1392 29 1 1.6768 -1.7489 -1.2491 30 1 3.9329 0.3072 -1.2498 31 1 3.9334 -1.2348 -2.1392 32 1 5.1707 -1.4405 -0.0003 33 1 3.7177 -2.4692 0.0000 34 1 3.6601 -0.9705 3.3868 35 1 3.7798 -2.4872 2.4631 36 1 5.8189 -2.1904 4.4564 37 1 5.7222 -3.3678 3.1243 38 1 7.9259 -2.6903 2.3030 39 1 8.0594 -3.0742 4.0394 40 1 10.8718 -3.4664 4.0981 41 1 7.7852 0.0229 1.7769 42 1 7.8459 1.0391 3.2392 43 1 5.5096 0.7344 2.3291 44 1 5.6973 0.1543 4.0018 45 1 1.6768 -1.7488 1.2493 46 1 1.6766 -0.2072 2.1392 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000092803821.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:26:33 Heat of formation + Delta-G solvation = -3.294197 kcal Electronic energy + Delta-G solvation = -21347.622047 eV Core-core repulsion = 18464.327277 eV Total energy + Delta-G solvation = -2883.294770 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 266.205 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -39.23702 -37.64336 -34.60213 -32.59717 -31.63322 -30.70291 -29.74098 -26.95725 -26.32377 -24.39691 -22.72015 -22.29196 -21.87334 -20.11882 -19.60307 -18.99002 -16.71960 -15.28258 -15.21129 -14.84165 -14.51559 -14.32263 -14.04983 -13.87185 -13.49532 -13.41943 -13.35351 -12.86924 -12.53113 -12.41608 -11.98930 -11.74686 -11.58982 -11.36115 -11.23306 -11.06527 -10.92720 -10.77019 -10.71150 -10.47954 -10.36966 -10.18710 -10.07937 -9.92701 -9.87258 -9.68645 -9.46613 -8.46537 -7.69932 -6.61600 -5.75156 -3.15975 3.39525 3.46591 3.48135 4.37380 4.53099 4.64508 4.73059 4.84163 5.08219 5.21241 5.37818 5.41650 5.42664 5.48891 5.51367 5.54729 5.59501 5.65842 5.72899 5.81473 5.84932 5.91387 5.98156 5.99931 6.02138 6.09504 6.21101 6.22455 6.25406 6.30016 6.31322 6.39812 6.44028 6.58351 6.63076 6.67345 6.77462 6.99233 7.29333 7.67593 7.72876 7.78206 7.87702 8.47284 9.24774 9.88517 10.48013 11.33673 Molecular weight = 266.21amu Principal moments of inertia in cm(-1) A = 0.046847 B = 0.003791 C = 0.003739 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 597.544377 B = 7385.102565 C = 7487.029473 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.091 4.091 3 H 0.067 0.933 4 C -0.113 4.113 5 C -0.121 4.121 6 C -0.104 4.104 7 C -0.078 4.078 8 H 0.068 0.932 9 C 0.058 3.942 10 N -0.529 5.529 11 C 0.036 3.964 12 C 0.180 3.820 13 N -0.595 5.595 14 C -0.252 4.252 15 H 0.065 0.935 16 C 0.002 3.998 17 N -0.901 5.901 18 Si 0.901 3.099 19 H -0.289 1.289 20 H -0.291 1.291 21 H -0.279 1.279 22 C 0.149 3.851 23 C 0.045 3.955 24 C -0.108 4.108 25 H 0.052 0.948 26 H 0.051 0.949 27 H 0.052 0.948 28 H 0.055 0.945 29 H 0.059 0.941 30 H 0.058 0.942 31 H 0.057 0.943 32 H 0.078 0.922 33 H 0.053 0.947 34 H 0.025 0.975 35 H 0.064 0.936 36 H 0.022 0.978 37 H 0.059 0.941 38 H 0.026 0.974 39 H 0.083 0.917 40 H 0.253 0.747 41 H 0.024 0.976 42 H 0.053 0.947 43 H 0.061 0.939 44 H 0.024 0.976 45 H 0.059 0.941 46 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.514 3.414 -7.648 19.414 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.109 4.109 3 H 0.086 0.914 4 C -0.150 4.150 5 C -0.158 4.158 6 C -0.141 4.141 7 C -0.097 4.097 8 H 0.086 0.914 9 C -0.070 4.070 10 N -0.254 5.254 11 C -0.093 4.093 12 C 0.054 3.946 13 N -0.318 5.318 14 C -0.382 4.382 15 H 0.083 0.917 16 C -0.197 4.197 17 N -0.546 5.546 18 Si 0.731 3.269 19 H -0.216 1.216 20 H -0.218 1.218 21 H -0.204 1.204 22 C 0.023 3.977 23 C -0.085 4.085 24 C -0.146 4.146 25 H 0.071 0.929 26 H 0.070 0.930 27 H 0.071 0.929 28 H 0.074 0.926 29 H 0.077 0.923 30 H 0.077 0.923 31 H 0.076 0.924 32 H 0.097 0.903 33 H 0.072 0.928 34 H 0.043 0.957 35 H 0.083 0.917 36 H 0.041 0.959 37 H 0.077 0.923 38 H 0.044 0.956 39 H 0.101 0.899 40 H 0.063 0.937 41 H 0.042 0.958 42 H 0.071 0.929 43 H 0.079 0.921 44 H 0.043 0.957 45 H 0.078 0.922 46 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -17.183 3.201 -8.094 19.262 hybrid contribution 0.190 0.088 1.648 1.662 sum -16.993 3.289 -6.446 18.470 Atomic orbital electron populations 1.21836 0.95684 1.01582 1.01317 1.21112 0.94903 0.99662 0.95269 0.91437 1.21591 0.96118 1.00309 0.96990 1.21563 0.94979 1.00849 0.98422 1.21443 1.01940 0.98146 0.92608 1.21119 0.93675 0.99899 0.95046 0.91393 1.22146 0.89061 0.99879 0.95943 1.61900 1.06845 1.04303 1.52318 1.22884 0.99998 0.93154 0.93265 1.20812 0.86516 0.87439 0.99843 1.44106 1.41103 1.01417 1.45213 1.19205 1.03985 1.01276 1.13741 0.91733 1.25026 0.97057 0.99103 0.98494 1.70057 1.36079 1.14425 1.34029 0.86288 0.79412 0.77674 0.83513 1.21564 1.21784 1.20427 1.20962 0.89479 0.92001 0.95291 1.22632 0.98856 0.89775 0.97218 1.21631 0.95585 1.00390 0.97023 0.92903 0.92978 0.92855 0.92637 0.92259 0.92287 0.92394 0.90308 0.92808 0.95660 0.91718 0.95948 0.92285 0.95562 0.89853 0.93688 0.95782 0.92852 0.92092 0.95728 0.92175 0.92475 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.19 9.19 37.16 0.34 -0.85 16 2 C -0.09 -0.86 2.72 -90.63 -0.25 -1.10 16 3 H 0.07 0.66 8.14 -51.92 -0.42 0.24 16 4 C -0.11 -1.06 5.20 -26.73 -0.14 -1.20 16 5 C -0.12 -1.30 5.92 -26.73 -0.16 -1.46 16 6 C -0.10 -1.31 5.08 -26.73 -0.14 -1.44 16 7 C -0.08 -0.98 2.24 -90.59 -0.20 -1.18 16 8 H 0.07 0.91 6.70 -51.93 -0.35 0.56 16 9 C 0.06 0.85 4.40 -3.82 -0.02 0.83 16 10 N -0.53 -9.49 3.97 -234.33 -0.93 -10.42 16 11 C 0.04 0.72 5.59 -3.70 -0.02 0.70 16 12 C 0.18 4.43 5.42 -3.60 -0.02 4.41 16 13 N -0.59 -15.42 3.03 -172.01 -0.52 -15.94 16 14 C -0.25 -7.09 9.62 -15.06 -0.14 -7.23 16 15 H 0.06 1.78 7.89 -52.48 -0.41 1.37 16 16 C 0.00 0.05 4.89 -17.43 -0.09 -0.03 16 17 N -0.90 -26.57 11.29 55.49 0.63 -25.95 16 18 Si 0.90 21.97 29.59 -169.99 -5.03 16.94 16 19 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 20 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 21 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 22 C 0.15 3.26 6.69 -3.60 -0.02 3.24 16 23 C 0.04 0.82 5.45 -3.70 -0.02 0.80 16 24 C -0.11 -1.13 4.49 -26.71 -0.12 -1.25 16 25 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 26 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 27 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 31 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 32 H 0.08 1.19 7.72 -51.92 -0.40 0.79 16 33 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.03 0.37 8.00 -51.93 -0.42 -0.04 16 35 H 0.06 0.92 7.77 -51.93 -0.40 0.51 16 36 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 37 H 0.06 1.07 7.90 -51.93 -0.41 0.66 16 38 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 39 H 0.08 2.26 6.22 -51.93 -0.32 1.94 16 40 H 0.25 7.19 8.31 -40.82 -0.34 6.85 16 41 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 42 H 0.05 1.12 7.96 -51.93 -0.41 0.71 16 43 H 0.06 0.98 6.62 -51.93 -0.34 0.64 16 44 H 0.02 0.48 8.14 -51.93 -0.42 0.05 16 45 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 46 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 LS Contribution 343.35 15.07 5.17 5.17 Total: -1.00 -29.08 343.35 -10.62 -39.71 By element: Atomic # 1 Polarization: 5.21 SS G_CDS: -8.95 Total: -3.74 kcal Atomic # 6 Polarization: -4.78 SS G_CDS: -0.99 Total: -5.77 kcal Atomic # 7 Polarization: -51.48 SS G_CDS: -0.82 Total: -52.31 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.03 Total: 16.94 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -29.08 -10.62 -39.71 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092803821.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.413 kcal (2) G-P(sol) polarization free energy of solvation -29.084 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.328 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.622 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.707 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.294 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds