Wall clock time and date at job start Mon Mar 30 2020 01:26:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09009 * 109.46696 * 2 1 4 4 C 1.52993 * 109.47393 * 240.00153 * 2 1 3 5 5 C 1.53001 * 109.47393 * 179.97438 * 4 2 1 6 6 C 1.52996 * 109.47208 * 59.99290 * 5 4 2 7 7 C 1.53002 * 109.47224 * 300.00343 * 6 5 4 8 8 H 1.08996 * 109.47185 * 299.99735 * 7 6 5 9 9 C 1.53002 * 109.46944 * 180.02562 * 7 6 5 10 10 N 1.46897 * 109.47483 * 64.06118 * 9 7 6 11 11 C 1.46893 * 111.00324 * 199.90574 * 10 9 7 12 12 C 1.53243 * 109.34121 * 172.75034 * 11 10 9 13 13 N 1.47078 * 108.52223 * 53.82821 * 12 11 10 14 14 C 1.36932 * 120.87871 * 128.79802 * 13 12 11 15 15 H 1.08011 * 119.99880 * 207.41764 * 14 13 12 16 16 C 1.38810 * 120.00474 * 27.41268 * 14 13 12 17 17 N 1.31621 * 119.99556 * 18.20328 * 16 14 13 18 18 Si 1.86801 * 120.00236 * 198.20375 * 16 14 13 19 19 H 1.48497 * 109.46818 * 94.98603 * 18 16 14 20 20 H 1.48505 * 109.46935 * 214.98241 * 18 16 14 21 21 H 1.48496 * 109.47369 * 334.98441 * 18 16 14 22 22 C 1.47078 * 118.23597 * 308.81871 * 13 12 11 23 23 C 1.46901 * 110.99603 * 75.60397 * 10 9 7 24 24 C 1.52996 * 109.47208 * 119.99443 * 2 1 3 25 25 H 1.08999 * 109.47446 * 300.00255 * 1 2 3 26 26 H 1.09001 * 109.47293 * 60.00759 * 1 2 3 27 27 H 1.09000 * 109.46509 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47645 * 59.99304 * 4 2 1 29 29 H 1.09000 * 109.46997 * 299.99338 * 4 2 1 30 30 H 1.09000 * 109.46509 * 299.99637 * 5 4 2 31 31 H 1.08994 * 109.47140 * 179.97438 * 5 4 2 32 32 H 1.09008 * 109.46931 * 180.02562 * 6 5 4 33 33 H 1.09000 * 109.47102 * 60.00710 * 6 5 4 34 34 H 1.08998 * 109.47223 * 184.06339 * 9 7 6 35 35 H 1.08999 * 109.47112 * 304.06207 * 9 7 6 36 36 H 1.09000 * 109.49394 * 292.70611 * 11 10 9 37 37 H 1.08997 * 109.49257 * 52.78790 * 11 10 9 38 38 H 1.09005 * 109.62374 * 294.11917 * 12 11 10 39 39 H 1.08996 * 109.63006 * 173.54526 * 12 11 10 40 40 H 0.97000 * 119.99734 * 179.97438 * 17 16 14 41 41 H 1.09006 * 109.63103 * 291.47043 * 22 13 12 42 42 H 1.09004 * 109.78831 * 170.98817 * 22 13 12 43 43 H 1.08996 * 109.49852 * 307.21396 * 23 10 9 44 44 H 1.09001 * 109.49355 * 67.29765 * 23 10 9 45 45 H 1.09000 * 109.47102 * 60.00710 * 24 2 1 46 46 H 1.08999 * 109.47163 * 300.00475 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0401 -0.7212 -1.2492 5 6 3.5701 -0.7206 -1.2495 6 6 4.0806 -1.4413 -0.0002 7 6 3.5705 -0.7200 1.2490 8 1 3.9335 0.3077 1.2487 9 6 4.0817 -1.4405 2.4983 10 7 5.5473 -1.3550 2.5477 11 6 6.1059 -2.3927 3.4245 12 6 7.6339 -2.3867 3.3084 13 7 8.1172 -1.0230 3.5726 14 6 9.1100 -0.7942 4.4876 15 1 9.1636 0.1549 5.0003 16 6 10.0475 -1.7820 4.7562 17 7 10.2164 -2.7763 3.9106 18 14 11.0692 -1.7001 6.3179 19 1 10.4246 -2.5204 7.3747 20 1 12.4316 -2.2249 6.0461 21 1 11.1638 -0.2902 6.7743 22 6 7.5056 0.0884 2.8285 23 6 5.9827 -0.0150 2.9635 24 6 2.0400 -0.7211 1.2493 25 1 -0.3634 0.5139 0.8899 26 1 -0.3634 0.5137 -0.8900 27 1 -0.3632 -1.0277 0.0005 28 1 1.6767 -0.2075 -2.1392 29 1 1.6768 -1.7489 -1.2491 30 1 3.9329 0.3072 -1.2498 31 1 3.9334 -1.2348 -2.1392 32 1 5.1707 -1.4405 -0.0003 33 1 3.7177 -2.4692 0.0000 34 1 3.6601 -0.9705 3.3868 35 1 3.7798 -2.4872 2.4631 36 1 5.8189 -2.1904 4.4564 37 1 5.7222 -3.3678 3.1243 38 1 7.9259 -2.6903 2.3030 39 1 8.0594 -3.0742 4.0394 40 1 10.8718 -3.4664 4.0981 41 1 7.7852 0.0229 1.7769 42 1 7.8459 1.0391 3.2392 43 1 5.5096 0.7344 2.3291 44 1 5.6973 0.1543 4.0018 45 1 1.6768 -1.7488 1.2493 46 1 1.6766 -0.2072 2.1392 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000092803821.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:26:32 Heat of formation + Delta-G solvation = -18.618045 kcal Electronic energy + Delta-G solvation = -21348.286539 eV Core-core repulsion = 18464.327277 eV Total energy + Delta-G solvation = -2883.959262 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 266.205 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.35025 -39.05731 -36.27041 -33.89347 -32.96330 -32.12553 -31.46049 -28.59820 -27.11499 -25.97708 -24.39241 -23.98124 -22.76334 -21.18653 -20.72074 -20.49723 -18.70709 -16.99013 -16.40595 -16.16257 -15.88508 -15.47771 -15.37062 -15.14064 -15.12844 -14.88829 -14.79882 -14.13432 -13.95694 -13.28015 -13.14599 -13.11901 -12.94034 -12.65259 -12.58440 -12.52810 -12.31795 -12.15805 -12.06569 -11.95117 -11.81992 -11.71398 -11.45210 -11.41433 -11.16983 -10.79491 -10.77328 -10.59311 -9.19326 -8.68264 -7.89084 -5.34064 1.45603 1.46714 1.56561 2.49776 3.01098 3.25778 3.67416 3.76199 3.89011 3.97398 4.15784 4.29038 4.34412 4.38877 4.43130 4.53093 4.53819 4.63789 4.67064 4.68529 4.73511 4.78842 4.84550 4.87807 4.88932 4.94507 4.99528 5.07851 5.11643 5.17579 5.19629 5.27866 5.34065 5.36939 5.46736 5.48065 5.55137 5.60208 5.64154 5.66120 5.71864 6.22934 6.34177 6.36803 7.11920 7.82457 8.37813 9.17821 Molecular weight = 266.21amu Principal moments of inertia in cm(-1) A = 0.046847 B = 0.003791 C = 0.003739 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 597.544377 B = 7385.102565 C = 7487.029473 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.090 4.090 3 H 0.065 0.935 4 C -0.109 4.109 5 C -0.118 4.118 6 C -0.101 4.101 7 C -0.071 4.071 8 H 0.062 0.938 9 C 0.061 3.939 10 N -0.536 5.536 11 C 0.052 3.948 12 C 0.188 3.812 13 N -0.614 5.614 14 C -0.267 4.267 15 H 0.066 0.934 16 C -0.050 4.050 17 N -0.934 5.934 18 Si 0.969 3.031 19 H -0.286 1.286 20 H -0.293 1.293 21 H -0.268 1.268 22 C 0.145 3.855 23 C 0.058 3.942 24 C -0.103 4.103 25 H 0.055 0.945 26 H 0.059 0.941 27 H 0.055 0.945 28 H 0.067 0.933 29 H 0.061 0.939 30 H 0.055 0.945 31 H 0.060 0.940 32 H 0.049 0.951 33 H 0.053 0.947 34 H 0.030 0.970 35 H 0.071 0.929 36 H 0.016 0.984 37 H 0.079 0.921 38 H -0.002 1.002 39 H 0.052 0.948 40 H 0.251 0.749 41 H 0.014 0.986 42 H 0.058 0.942 43 H 0.090 0.910 44 H 0.019 0.981 45 H 0.063 0.937 46 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.611 4.237 -7.614 21.459 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.108 4.108 3 H 0.083 0.917 4 C -0.146 4.146 5 C -0.156 4.156 6 C -0.138 4.138 7 C -0.090 4.090 8 H 0.080 0.920 9 C -0.067 4.067 10 N -0.260 5.260 11 C -0.078 4.078 12 C 0.062 3.938 13 N -0.338 5.338 14 C -0.397 4.397 15 H 0.084 0.916 16 C -0.246 4.246 17 N -0.580 5.580 18 Si 0.797 3.203 19 H -0.212 1.212 20 H -0.220 1.220 21 H -0.192 1.192 22 C 0.020 3.980 23 C -0.071 4.071 24 C -0.141 4.141 25 H 0.074 0.926 26 H 0.078 0.922 27 H 0.074 0.926 28 H 0.085 0.915 29 H 0.080 0.920 30 H 0.074 0.926 31 H 0.079 0.921 32 H 0.068 0.932 33 H 0.072 0.928 34 H 0.049 0.951 35 H 0.090 0.910 36 H 0.035 0.965 37 H 0.097 0.903 38 H 0.016 0.984 39 H 0.070 0.930 40 H 0.060 0.940 41 H 0.032 0.968 42 H 0.076 0.924 43 H 0.108 0.892 44 H 0.038 0.962 45 H 0.082 0.918 46 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -19.312 4.048 -8.069 21.318 hybrid contribution 0.849 -0.147 1.570 1.791 sum -18.463 3.902 -6.499 19.958 Atomic orbital electron populations 1.21802 0.94435 1.01966 1.01920 1.21099 0.95909 0.99257 0.94542 0.91695 1.21568 0.94774 1.00681 0.97615 1.21531 0.96173 1.00361 0.97495 1.21372 1.00067 0.98572 0.93810 1.21059 0.95236 0.98993 0.93736 0.92010 1.22223 0.86394 1.00837 0.97232 1.61856 1.09290 1.03435 1.51426 1.22569 0.96650 0.95040 0.93495 1.20567 0.89591 0.86536 0.97057 1.44394 1.41184 1.02651 1.45586 1.19538 1.04470 1.01447 1.14286 0.91618 1.25820 0.98488 0.98900 1.01352 1.70212 1.36893 1.15147 1.35739 0.85225 0.77414 0.78051 0.79605 1.21237 1.22014 1.19227 1.21103 0.91794 0.91017 0.94130 1.22443 0.96245 0.90853 0.97584 1.21585 0.93642 1.00931 0.97928 0.92569 0.92188 0.92579 0.91470 0.92026 0.92571 0.92145 0.93236 0.92780 0.95148 0.91010 0.96532 0.90307 0.98384 0.92957 0.94033 0.96807 0.92390 0.89228 0.96244 0.91805 0.91961 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.90 9.19 71.98 0.66 -1.24 16 2 C -0.09 -1.44 2.72 -10.80 -0.03 -1.47 16 3 H 0.06 1.10 8.14 -2.38 -0.02 1.08 16 4 C -0.11 -1.78 5.20 30.59 0.16 -1.62 16 5 C -0.12 -2.35 5.92 30.59 0.18 -2.16 16 6 C -0.10 -2.41 5.08 30.59 0.16 -2.26 16 7 C -0.07 -1.63 2.24 -10.77 -0.02 -1.66 16 8 H 0.06 1.51 6.70 -2.39 -0.02 1.49 16 9 C 0.06 1.65 4.40 86.30 0.38 2.03 16 10 N -0.54 -18.71 3.97 -895.27 -3.55 -22.27 16 11 C 0.05 2.07 5.59 86.39 0.48 2.55 16 12 C 0.19 9.57 5.42 86.35 0.47 10.04 16 13 N -0.61 -32.46 3.03 -698.11 -2.12 -34.58 16 14 C -0.27 -15.24 9.62 84.03 0.81 -14.43 16 15 H 0.07 3.65 7.89 -2.91 -0.02 3.62 16 16 C -0.05 -2.87 4.89 84.86 0.42 -2.45 16 17 N -0.93 -56.66 11.29 21.65 0.24 -56.41 16 18 Si 0.97 45.70 29.59 68.60 2.03 47.73 16 19 H -0.29 -13.24 7.11 99.48 0.71 -12.54 16 20 H -0.29 -13.85 7.11 99.48 0.71 -13.14 16 21 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 22 C 0.15 6.37 6.69 86.35 0.58 6.95 16 23 C 0.06 2.07 5.45 86.38 0.47 2.54 16 24 C -0.10 -1.87 4.49 30.61 0.14 -1.73 16 25 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 26 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 27 H 0.06 0.71 8.14 -2.39 -0.02 0.70 16 28 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 29 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 30 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 31 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 32 H 0.05 1.48 7.72 -2.38 -0.02 1.46 16 33 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 34 H 0.03 0.81 8.00 -2.39 -0.02 0.80 16 35 H 0.07 1.87 7.77 -2.39 -0.02 1.85 16 36 H 0.02 0.68 8.14 -2.39 -0.02 0.66 16 37 H 0.08 2.81 7.90 -2.39 -0.02 2.79 16 38 H 0.00 -0.11 8.14 -2.38 -0.02 -0.13 16 39 H 0.05 2.95 6.22 -2.39 -0.01 2.94 16 40 H 0.25 14.64 8.31 -92.71 -0.77 13.87 16 41 H 0.01 0.64 8.14 -2.38 -0.02 0.62 16 42 H 0.06 2.44 7.96 -2.39 -0.02 2.42 16 43 H 0.09 2.70 6.62 -2.39 -0.02 2.69 16 44 H 0.02 0.72 8.14 -2.39 -0.02 0.70 16 45 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 46 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 Total: -1.00 -63.19 343.35 2.34 -60.85 By element: Atomic # 1 Polarization: 8.68 SS G_CDS: 0.90 Total: 9.58 kcal Atomic # 6 Polarization: -9.74 SS G_CDS: 4.84 Total: -4.90 kcal Atomic # 7 Polarization: -107.83 SS G_CDS: -5.43 Total: -113.26 kcal Atomic # 14 Polarization: 45.70 SS G_CDS: 2.03 Total: 47.73 kcal Total: -63.19 2.34 -60.85 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092803821.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.230 kcal (2) G-P(sol) polarization free energy of solvation -63.192 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.962 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.343 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.848 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.618 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds