Wall clock time and date at job start Mon Mar 30 2020 01:26:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.08996 * 109.47476 * 2 1 4 4 C 1.52998 * 109.47368 * 120.00125 * 2 1 3 5 5 C 1.53003 * 109.47177 * 59.99856 * 4 2 1 6 6 C 1.52995 * 109.47177 * 59.99832 * 5 4 2 7 7 C 1.52994 * 109.47695 * 300.00318 * 6 5 4 8 8 H 1.09000 * 109.46829 * 300.00497 * 7 6 5 9 9 C 1.52995 * 109.47695 * 179.97438 * 7 6 5 10 10 N 1.46901 * 109.47334 * 178.65968 * 9 7 6 11 11 C 1.46901 * 110.99867 * 183.01721 * 10 9 7 12 12 C 1.53242 * 109.33647 * 187.25418 * 11 10 9 13 13 N 1.47080 * 108.52251 * 306.17203 * 12 11 10 14 14 C 1.36929 * 120.87974 * 231.18285 * 13 12 11 15 15 H 1.07998 * 120.00126 * 31.24900 * 14 13 12 16 16 C 1.38810 * 119.99901 * 210.96321 * 14 13 12 17 17 N 1.31617 * 120.00229 * 13.24116 * 16 14 13 18 18 Si 1.86806 * 120.00083 * 193.23684 * 16 14 13 19 19 H 1.48493 * 109.46962 * 90.00273 * 18 16 14 20 20 H 1.48497 * 109.47236 * 210.00398 * 18 16 14 21 21 H 1.48503 * 109.46952 * 330.00509 * 18 16 14 22 22 C 1.47077 * 118.23574 * 51.46239 * 13 12 11 23 23 C 1.46899 * 111.00025 * 307.32448 * 10 9 7 24 24 C 1.53003 * 109.47067 * 59.99615 * 7 6 5 25 25 H 1.09002 * 109.46862 * 299.99843 * 1 2 3 26 26 H 1.09003 * 109.47592 * 59.99733 * 1 2 3 27 27 H 1.09002 * 109.47421 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.47155 * 299.99852 * 4 2 1 29 29 H 1.09000 * 109.47289 * 179.97438 * 4 2 1 30 30 H 1.09000 * 109.46985 * 300.00154 * 5 4 2 31 31 H 1.08998 * 109.47443 * 180.02562 * 5 4 2 32 32 H 1.09006 * 109.47276 * 179.97438 * 6 5 4 33 33 H 1.09000 * 109.47388 * 60.00473 * 6 5 4 34 34 H 1.09001 * 109.47348 * 58.66348 * 9 7 6 35 35 H 1.08997 * 109.47047 * 298.66180 * 9 7 6 36 36 H 1.09004 * 109.48941 * 67.30176 * 11 10 9 37 37 H 1.08993 * 109.49832 * 307.21548 * 11 10 9 38 38 H 1.09005 * 109.62600 * 186.46132 * 12 11 10 39 39 H 1.08998 * 109.62844 * 65.88678 * 12 11 10 40 40 H 0.97001 * 119.99992 * 179.97438 * 17 16 14 41 41 H 1.08996 * 109.63161 * 68.24489 * 22 13 12 42 42 H 1.09003 * 109.62738 * 188.83102 * 22 13 12 43 43 H 1.08997 * 109.49320 * 292.70440 * 23 10 9 44 44 H 1.08996 * 109.49307 * 52.78691 * 23 10 9 45 45 H 1.09000 * 109.46985 * 60.00379 * 24 7 6 46 46 H 1.08998 * 109.47443 * 180.02562 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.5300 -2.1638 1.2492 6 6 2.0399 -2.8850 0.0000 7 6 1.5299 -2.1638 -1.2493 8 1 0.4399 -2.1637 -1.2492 9 6 2.0403 -2.8847 -2.4985 10 7 1.5244 -2.2111 -3.6977 11 6 1.9361 -2.9190 -4.9173 12 6 1.5357 -2.0920 -6.1437 13 7 0.0990 -1.7899 -6.0548 14 6 -0.7395 -2.0472 -7.1063 15 1 -0.5358 -2.8747 -7.7696 16 6 -1.8549 -1.2478 -7.3162 17 7 -1.9719 -0.1013 -6.6806 18 14 -3.1897 -1.7994 -8.5009 19 1 -4.2060 -2.5946 -7.7661 20 1 -3.8368 -0.6081 -9.1070 21 1 -2.5874 -2.6340 -9.5714 22 6 -0.4119 -1.1985 -4.8089 23 6 0.0640 -2.0661 -3.6329 24 6 2.0399 -0.7213 -1.2493 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 1.6767 -0.2074 2.1392 29 1 3.1300 -0.7216 1.2489 30 1 0.4400 -2.1638 1.2492 31 1 1.8929 -2.6775 2.1394 32 1 1.6769 -3.9128 0.0002 33 1 3.1299 -2.8851 -0.0001 34 1 1.6970 -3.9191 -2.4869 35 1 3.1300 -2.8636 -2.5104 36 1 1.4438 -3.8908 -4.9575 37 1 3.0170 -3.0584 -4.9097 38 1 1.7345 -2.6626 -7.0509 39 1 2.1050 -1.1626 -6.1603 40 1 -2.7511 0.4574 -6.8276 41 1 -0.0263 -0.1849 -4.6996 42 1 -1.5015 -1.1781 -4.8332 43 1 -0.4021 -3.0497 -3.6909 44 1 -0.2126 -1.5870 -2.6938 45 1 3.1299 -0.7213 -1.2493 46 1 1.6763 -0.2073 -2.1390 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000092803822.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:26:35 Heat of formation + Delta-G solvation = 3.596732 kcal Electronic energy + Delta-G solvation = -21827.771856 eV Core-core repulsion = 18944.775899 eV Total energy + Delta-G solvation = -2882.995957 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 266.205 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -39.55042 -37.60010 -34.54013 -32.31487 -31.50261 -30.31043 -29.81428 -26.85241 -26.66484 -24.41118 -22.79684 -22.55949 -21.90948 -20.37668 -19.04322 -18.40382 -16.67868 -15.63671 -15.27628 -14.67111 -14.50681 -14.41331 -14.11262 -13.74011 -13.49220 -13.33303 -13.09886 -12.84105 -12.57671 -12.32850 -11.99014 -11.63340 -11.52119 -11.29374 -11.19620 -10.99576 -10.89606 -10.80124 -10.68714 -10.45782 -10.22182 -10.17048 -9.97503 -9.86443 -9.77398 -9.63966 -9.42600 -8.46827 -7.67821 -6.55078 -5.74153 -3.20119 3.39284 3.45838 3.47236 4.43961 4.53284 4.70809 4.79401 4.87953 5.20216 5.29560 5.41506 5.42513 5.44592 5.48055 5.52297 5.58542 5.70256 5.79341 5.81822 5.89349 5.91978 6.01259 6.04342 6.05243 6.07801 6.16993 6.22013 6.23925 6.29574 6.32445 6.40266 6.42502 6.51832 6.59474 6.70519 6.71894 6.79137 7.01108 7.31736 7.70277 7.74661 7.79851 7.88774 8.50790 9.26611 9.88589 10.49924 11.34309 Molecular weight = 266.21amu Principal moments of inertia in cm(-1) A = 0.028968 B = 0.004768 C = 0.004387 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 966.335896 B = 5871.615516 C = 6380.245095 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.093 4.093 3 H 0.065 0.935 4 C -0.113 4.113 5 C -0.119 4.119 6 C -0.112 4.112 7 C -0.089 4.089 8 H 0.077 0.923 9 C 0.059 3.941 10 N -0.528 5.528 11 C 0.045 3.955 12 C 0.149 3.851 13 N -0.595 5.595 14 C -0.253 4.253 15 H 0.063 0.937 16 C 0.005 3.995 17 N -0.903 5.903 18 Si 0.902 3.098 19 H -0.288 1.288 20 H -0.291 1.291 21 H -0.279 1.279 22 C 0.182 3.818 23 C 0.030 3.970 24 C -0.099 4.099 25 H 0.046 0.954 26 H 0.058 0.942 27 H 0.058 0.942 28 H 0.055 0.945 29 H 0.058 0.942 30 H 0.063 0.937 31 H 0.055 0.945 32 H 0.056 0.944 33 H 0.059 0.941 34 H 0.021 0.979 35 H 0.065 0.935 36 H 0.025 0.975 37 H 0.059 0.941 38 H 0.053 0.947 39 H 0.025 0.975 40 H 0.253 0.747 41 H 0.026 0.974 42 H 0.082 0.918 43 H 0.020 0.980 44 H 0.066 0.934 45 H 0.054 0.946 46 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.730 -3.121 14.903 17.076 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.112 4.112 3 H 0.083 0.917 4 C -0.150 4.150 5 C -0.156 4.156 6 C -0.150 4.150 7 C -0.107 4.107 8 H 0.095 0.905 9 C -0.069 4.069 10 N -0.253 5.253 11 C -0.085 4.085 12 C 0.023 3.977 13 N -0.318 5.318 14 C -0.383 4.383 15 H 0.081 0.919 16 C -0.194 4.194 17 N -0.548 5.548 18 Si 0.732 3.268 19 H -0.215 1.215 20 H -0.217 1.217 21 H -0.205 1.205 22 C 0.056 3.944 23 C -0.099 4.099 24 C -0.137 4.137 25 H 0.066 0.934 26 H 0.077 0.923 27 H 0.077 0.923 28 H 0.074 0.926 29 H 0.076 0.924 30 H 0.082 0.918 31 H 0.074 0.926 32 H 0.075 0.925 33 H 0.077 0.923 34 H 0.039 0.961 35 H 0.083 0.917 36 H 0.043 0.957 37 H 0.077 0.923 38 H 0.072 0.928 39 H 0.042 0.958 40 H 0.064 0.936 41 H 0.044 0.956 42 H 0.100 0.900 43 H 0.038 0.962 44 H 0.084 0.916 45 H 0.073 0.927 46 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 7.792 -2.529 14.834 16.945 hybrid contribution -1.050 -1.100 -0.540 1.614 sum 6.742 -3.629 14.293 16.215 Atomic orbital electron populations 1.21935 0.95417 1.01966 1.01453 1.21127 0.95965 0.98926 0.95149 0.91686 1.21558 1.00221 0.95631 0.97620 1.21540 1.01013 0.95713 0.97383 1.21545 1.00535 0.98547 0.94421 1.21290 1.00937 0.95476 0.93015 0.90520 1.22140 0.99395 0.94899 0.90477 1.61983 1.12535 1.49886 1.00903 1.22595 0.98304 0.95759 0.91825 1.20977 0.86846 0.96184 0.93739 1.44082 1.01581 1.73690 1.12482 1.19174 1.04564 1.08316 1.06255 0.91942 1.25133 1.00547 0.94903 0.98821 1.69999 1.29121 1.10474 1.45173 0.86292 0.82140 0.77536 0.80795 1.21498 1.21689 1.20451 1.20896 0.99039 0.92661 0.81813 1.23062 0.86370 0.99454 1.00982 1.21484 0.99815 0.94777 0.97577 0.93447 0.92263 0.92279 0.92605 0.92356 0.91794 0.92630 0.92548 0.92253 0.96064 0.91689 0.95717 0.92283 0.92814 0.95758 0.93647 0.95580 0.90006 0.96161 0.91568 0.92690 0.90223 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.75 8.50 37.15 0.32 -1.44 16 2 C -0.09 -1.06 3.19 -90.62 -0.29 -1.35 16 3 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 4 C -0.11 -1.11 5.45 -26.73 -0.15 -1.26 16 5 C -0.12 -1.17 5.65 -26.73 -0.15 -1.32 16 6 C -0.11 -1.21 5.20 -26.74 -0.14 -1.35 16 7 C -0.09 -1.14 1.43 -90.62 -0.13 -1.27 16 8 H 0.08 1.08 4.37 -51.93 -0.23 0.85 16 9 C 0.06 0.87 4.53 -3.83 -0.02 0.85 16 10 N -0.53 -9.51 4.02 -234.03 -0.94 -10.45 16 11 C 0.04 0.83 5.62 -3.70 -0.02 0.81 16 12 C 0.15 3.28 6.69 -3.60 -0.02 3.25 16 13 N -0.59 -15.42 3.01 -171.73 -0.52 -15.93 16 14 C -0.25 -7.11 9.61 -15.06 -0.14 -7.25 16 15 H 0.06 1.73 7.86 -52.49 -0.41 1.31 16 16 C 0.00 0.13 5.00 -17.43 -0.09 0.05 16 17 N -0.90 -26.57 11.23 55.49 0.62 -25.94 16 18 Si 0.90 21.95 29.57 -169.99 -5.03 16.92 16 19 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 20 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 21 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 22 C 0.18 4.46 5.40 -3.36 -0.02 4.44 16 23 C 0.03 0.60 5.18 -3.46 -0.02 0.58 16 24 C -0.10 -1.29 4.53 -26.73 -0.12 -1.41 16 25 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 26 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 27 H 0.06 0.70 4.81 -51.93 -0.25 0.45 16 28 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.06 0.65 6.43 -51.93 -0.33 0.32 16 31 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 32 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 33 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.02 0.32 8.14 -51.93 -0.42 -0.10 16 35 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 36 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 37 H 0.06 0.95 8.11 -51.93 -0.42 0.53 16 38 H 0.05 1.14 7.95 -51.93 -0.41 0.72 16 39 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 40 H 0.25 7.19 8.31 -40.82 -0.34 6.85 16 41 H 0.03 0.69 8.14 -51.93 -0.42 0.26 16 42 H 0.08 2.22 6.32 -51.93 -0.33 1.89 16 43 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 44 H 0.07 1.19 5.70 -51.93 -0.30 0.90 16 45 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 46 H 0.08 1.25 7.56 -51.93 -0.39 0.86 16 LS Contribution 334.68 15.07 5.04 5.04 Total: -1.00 -29.04 334.68 -10.36 -39.40 By element: Atomic # 1 Polarization: 6.18 SS G_CDS: -8.55 Total: -2.37 kcal Atomic # 6 Polarization: -5.68 SS G_CDS: -0.99 Total: -6.67 kcal Atomic # 7 Polarization: -51.50 SS G_CDS: -0.84 Total: -52.33 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.03 Total: 16.92 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -29.04 -10.36 -39.40 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092803822.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.002 kcal (2) G-P(sol) polarization free energy of solvation -29.044 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.958 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.361 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.405 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.597 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds