Wall clock time and date at job start Mon Mar 30 2020 01:26:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.08996 * 109.47476 * 2 1 4 4 C 1.52998 * 109.47368 * 120.00125 * 2 1 3 5 5 C 1.53003 * 109.47177 * 59.99856 * 4 2 1 6 6 C 1.52995 * 109.47177 * 59.99832 * 5 4 2 7 7 C 1.52994 * 109.47695 * 300.00318 * 6 5 4 8 8 H 1.09000 * 109.46829 * 300.00497 * 7 6 5 9 9 C 1.52995 * 109.47695 * 179.97438 * 7 6 5 10 10 N 1.46901 * 109.47334 * 178.65968 * 9 7 6 11 11 C 1.46901 * 110.99867 * 183.01721 * 10 9 7 12 12 C 1.53242 * 109.33647 * 187.25418 * 11 10 9 13 13 N 1.47080 * 108.52251 * 306.17203 * 12 11 10 14 14 C 1.36929 * 120.87974 * 231.18285 * 13 12 11 15 15 H 1.07998 * 120.00126 * 31.24900 * 14 13 12 16 16 C 1.38810 * 119.99901 * 210.96321 * 14 13 12 17 17 N 1.31617 * 120.00229 * 13.24116 * 16 14 13 18 18 Si 1.86806 * 120.00083 * 193.23684 * 16 14 13 19 19 H 1.48493 * 109.46962 * 90.00273 * 18 16 14 20 20 H 1.48497 * 109.47236 * 210.00398 * 18 16 14 21 21 H 1.48503 * 109.46952 * 330.00509 * 18 16 14 22 22 C 1.47077 * 118.23574 * 51.46239 * 13 12 11 23 23 C 1.46899 * 111.00025 * 307.32448 * 10 9 7 24 24 C 1.53003 * 109.47067 * 59.99615 * 7 6 5 25 25 H 1.09002 * 109.46862 * 299.99843 * 1 2 3 26 26 H 1.09003 * 109.47592 * 59.99733 * 1 2 3 27 27 H 1.09002 * 109.47421 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.47155 * 299.99852 * 4 2 1 29 29 H 1.09000 * 109.47289 * 179.97438 * 4 2 1 30 30 H 1.09000 * 109.46985 * 300.00154 * 5 4 2 31 31 H 1.08998 * 109.47443 * 180.02562 * 5 4 2 32 32 H 1.09006 * 109.47276 * 179.97438 * 6 5 4 33 33 H 1.09000 * 109.47388 * 60.00473 * 6 5 4 34 34 H 1.09001 * 109.47348 * 58.66348 * 9 7 6 35 35 H 1.08997 * 109.47047 * 298.66180 * 9 7 6 36 36 H 1.09004 * 109.48941 * 67.30176 * 11 10 9 37 37 H 1.08993 * 109.49832 * 307.21548 * 11 10 9 38 38 H 1.09005 * 109.62600 * 186.46132 * 12 11 10 39 39 H 1.08998 * 109.62844 * 65.88678 * 12 11 10 40 40 H 0.97001 * 119.99992 * 179.97438 * 17 16 14 41 41 H 1.08996 * 109.63161 * 68.24489 * 22 13 12 42 42 H 1.09003 * 109.62738 * 188.83102 * 22 13 12 43 43 H 1.08997 * 109.49320 * 292.70440 * 23 10 9 44 44 H 1.08996 * 109.49307 * 52.78691 * 23 10 9 45 45 H 1.09000 * 109.46985 * 60.00379 * 24 7 6 46 46 H 1.08998 * 109.47443 * 180.02562 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.5300 -2.1638 1.2492 6 6 2.0399 -2.8850 0.0000 7 6 1.5299 -2.1638 -1.2493 8 1 0.4399 -2.1637 -1.2492 9 6 2.0403 -2.8847 -2.4985 10 7 1.5244 -2.2111 -3.6977 11 6 1.9361 -2.9190 -4.9173 12 6 1.5357 -2.0920 -6.1437 13 7 0.0990 -1.7899 -6.0548 14 6 -0.7395 -2.0472 -7.1063 15 1 -0.5358 -2.8747 -7.7696 16 6 -1.8549 -1.2478 -7.3162 17 7 -1.9719 -0.1013 -6.6806 18 14 -3.1897 -1.7994 -8.5009 19 1 -4.2060 -2.5946 -7.7661 20 1 -3.8368 -0.6081 -9.1070 21 1 -2.5874 -2.6340 -9.5714 22 6 -0.4119 -1.1985 -4.8089 23 6 0.0640 -2.0661 -3.6329 24 6 2.0399 -0.7213 -1.2493 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 1.6767 -0.2074 2.1392 29 1 3.1300 -0.7216 1.2489 30 1 0.4400 -2.1638 1.2492 31 1 1.8929 -2.6775 2.1394 32 1 1.6769 -3.9128 0.0002 33 1 3.1299 -2.8851 -0.0001 34 1 1.6970 -3.9191 -2.4869 35 1 3.1300 -2.8636 -2.5104 36 1 1.4438 -3.8908 -4.9575 37 1 3.0170 -3.0584 -4.9097 38 1 1.7345 -2.6626 -7.0509 39 1 2.1050 -1.1626 -6.1603 40 1 -2.7511 0.4574 -6.8276 41 1 -0.0263 -0.1849 -4.6996 42 1 -1.5015 -1.1781 -4.8332 43 1 -0.4021 -3.0497 -3.6909 44 1 -0.2126 -1.5870 -2.6938 45 1 3.1299 -0.7213 -1.2493 46 1 1.6763 -0.2073 -2.1390 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000092803822.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:26:35 Heat of formation + Delta-G solvation = -12.107195 kcal Electronic energy + Delta-G solvation = -21828.452829 eV Core-core repulsion = 18944.775899 eV Total energy + Delta-G solvation = -2883.676930 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 266.205 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.66406 -39.07773 -36.25250 -33.81662 -32.71599 -31.79879 -31.48114 -28.53240 -27.59957 -25.99895 -24.43522 -24.12128 -22.94703 -21.59364 -20.73305 -19.38388 -18.66776 -17.07146 -16.59361 -16.30318 -15.82523 -15.58161 -15.36308 -15.30155 -15.04298 -14.87500 -14.61495 -14.35666 -13.59542 -13.36468 -13.30629 -13.11744 -12.92953 -12.66955 -12.59856 -12.44392 -12.37961 -12.16152 -12.04970 -11.91197 -11.82192 -11.78541 -11.46748 -11.41540 -10.93621 -10.74431 -10.70217 -10.59714 -9.18029 -8.62516 -7.88094 -5.38587 1.45376 1.46252 1.55746 2.49265 3.04795 3.27929 3.68675 3.77036 3.87922 3.94625 4.22952 4.31309 4.32780 4.38053 4.47545 4.52158 4.55250 4.58048 4.59001 4.67121 4.72379 4.76367 4.87013 4.91002 4.93444 4.94861 5.03484 5.06330 5.13321 5.20278 5.22414 5.25396 5.35004 5.35852 5.40604 5.47249 5.57134 5.60291 5.66096 5.68476 5.73258 6.24268 6.35132 6.39276 7.13372 7.82518 8.39354 9.18233 Molecular weight = 266.21amu Principal moments of inertia in cm(-1) A = 0.028968 B = 0.004768 C = 0.004387 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 966.335896 B = 5871.615516 C = 6380.245095 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.092 4.092 3 H 0.065 0.935 4 C -0.108 4.108 5 C -0.118 4.118 6 C -0.107 4.107 7 C -0.084 4.084 8 H 0.062 0.938 9 C 0.062 3.938 10 N -0.535 5.535 11 C 0.055 3.945 12 C 0.145 3.855 13 N -0.614 5.614 14 C -0.269 4.269 15 H 0.064 0.936 16 C -0.047 4.047 17 N -0.936 5.936 18 Si 0.970 3.030 19 H -0.284 1.284 20 H -0.293 1.293 21 H -0.268 1.268 22 C 0.191 3.809 23 C 0.052 3.948 24 C -0.094 4.094 25 H 0.060 0.940 26 H 0.037 0.963 27 H 0.057 0.943 28 H 0.067 0.933 29 H 0.065 0.935 30 H 0.059 0.941 31 H 0.073 0.927 32 H 0.061 0.939 33 H 0.069 0.931 34 H 0.024 0.976 35 H 0.082 0.918 36 H 0.019 0.981 37 H 0.092 0.908 38 H 0.059 0.941 39 H 0.014 0.986 40 H 0.251 0.749 41 H -0.003 1.003 42 H 0.049 0.951 43 H 0.010 0.990 44 H 0.082 0.918 45 H 0.060 0.940 46 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.842 -4.524 16.377 19.153 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.111 4.111 3 H 0.084 0.916 4 C -0.146 4.146 5 C -0.155 4.155 6 C -0.145 4.145 7 C -0.103 4.103 8 H 0.080 0.920 9 C -0.066 4.066 10 N -0.260 5.260 11 C -0.074 4.074 12 C 0.019 3.981 13 N -0.338 5.338 14 C -0.399 4.399 15 H 0.082 0.918 16 C -0.243 4.243 17 N -0.581 5.581 18 Si 0.798 3.202 19 H -0.211 1.211 20 H -0.219 1.219 21 H -0.192 1.192 22 C 0.066 3.934 23 C -0.077 4.077 24 C -0.132 4.132 25 H 0.079 0.921 26 H 0.056 0.944 27 H 0.076 0.924 28 H 0.085 0.915 29 H 0.084 0.916 30 H 0.077 0.923 31 H 0.091 0.909 32 H 0.079 0.921 33 H 0.087 0.913 34 H 0.043 0.957 35 H 0.100 0.900 36 H 0.038 0.962 37 H 0.111 0.889 38 H 0.077 0.923 39 H 0.032 0.968 40 H 0.060 0.940 41 H 0.015 0.985 42 H 0.067 0.933 43 H 0.029 0.971 44 H 0.100 0.900 45 H 0.079 0.921 46 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 8.934 -3.954 16.319 19.020 hybrid contribution -1.334 -0.629 -1.009 1.787 sum 7.600 -4.583 15.310 17.696 Atomic orbital electron populations 1.21917 0.95892 1.01737 1.01073 1.21115 0.95526 0.99086 0.95330 0.91639 1.21528 1.00632 0.95529 0.96879 1.21541 1.00776 0.95654 0.97546 1.21503 1.01064 0.98521 0.93412 1.21239 1.00023 0.95489 0.93518 0.91974 1.22233 1.00217 0.94813 0.89330 1.61929 1.10909 1.50920 1.02252 1.22449 1.00130 0.94419 0.90434 1.21122 0.84616 0.96351 0.96006 1.44367 1.03191 1.73795 1.12484 1.19513 1.05316 1.08329 1.06742 0.91789 1.25920 1.02677 0.94941 1.00739 1.70168 1.29585 1.11611 1.46758 0.85235 0.79175 0.76982 0.78851 1.21095 1.21894 1.19248 1.20628 0.97003 0.92265 0.83554 1.22679 0.87852 0.97827 0.99371 1.21398 1.00012 0.94749 0.97030 0.92055 0.94412 0.92426 0.91462 0.91613 0.92263 0.90879 0.92051 0.91278 0.95743 0.89993 0.96225 0.88948 0.92304 0.96771 0.94019 0.98475 0.93262 0.97129 0.89964 0.92116 0.93569 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.39 8.50 71.98 0.61 -2.78 16 2 C -0.09 -1.96 3.19 -10.79 -0.03 -2.00 16 3 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 4 C -0.11 -1.83 5.45 30.59 0.17 -1.66 16 5 C -0.12 -1.95 5.65 30.59 0.17 -1.78 16 6 C -0.11 -1.98 5.20 30.59 0.16 -1.82 16 7 C -0.08 -2.02 1.43 -10.80 -0.02 -2.04 16 8 H 0.06 1.69 4.37 -2.39 -0.01 1.68 16 9 C 0.06 1.67 4.53 86.30 0.39 2.06 16 10 N -0.54 -18.83 4.02 -894.32 -3.60 -22.43 16 11 C 0.05 1.97 5.62 86.38 0.49 2.45 16 12 C 0.14 6.37 6.69 86.35 0.58 6.95 16 13 N -0.61 -32.61 3.01 -697.24 -2.10 -34.71 16 14 C -0.27 -15.37 9.61 84.03 0.81 -14.56 16 15 H 0.06 3.56 7.86 -2.91 -0.02 3.54 16 16 C -0.05 -2.70 5.00 84.86 0.42 -2.28 16 17 N -0.94 -56.90 11.23 21.65 0.24 -56.66 16 18 Si 0.97 45.75 29.57 68.60 2.03 47.78 16 19 H -0.28 -13.15 7.11 99.48 0.71 -12.45 16 20 H -0.29 -13.80 7.11 99.48 0.71 -13.09 16 21 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 22 C 0.19 9.80 5.40 86.50 0.47 10.27 16 23 C 0.05 2.09 5.18 86.54 0.45 2.54 16 24 C -0.09 -2.35 4.53 30.60 0.14 -2.21 16 25 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 26 H 0.04 1.00 8.14 -2.39 -0.02 0.98 16 27 H 0.06 1.31 4.81 -2.39 -0.01 1.30 16 28 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 29 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 30 H 0.06 1.05 6.43 -2.39 -0.02 1.04 16 31 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 32 H 0.06 1.10 8.14 -2.38 -0.02 1.08 16 33 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 34 H 0.02 0.67 8.14 -2.39 -0.02 0.65 16 35 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 36 H 0.02 0.73 8.14 -2.39 -0.02 0.71 16 37 H 0.09 2.72 8.11 -2.39 -0.02 2.70 16 38 H 0.06 2.48 7.95 -2.38 -0.02 2.46 16 39 H 0.01 0.65 8.14 -2.39 -0.02 0.64 16 40 H 0.25 14.70 8.31 -92.71 -0.77 13.92 16 41 H 0.00 -0.16 8.14 -2.39 -0.02 -0.18 16 42 H 0.05 2.81 6.32 -2.39 -0.02 2.79 16 43 H 0.01 0.44 8.14 -2.39 -0.02 0.42 16 44 H 0.08 3.03 5.70 -2.39 -0.01 3.01 16 45 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 46 H 0.05 1.46 7.56 -2.39 -0.02 1.44 16 Total: -1.00 -63.75 334.68 2.28 -61.47 By element: Atomic # 1 Polarization: 10.50 SS G_CDS: 0.91 Total: 11.41 kcal Atomic # 6 Polarization: -11.66 SS G_CDS: 4.80 Total: -6.86 kcal Atomic # 7 Polarization: -108.34 SS G_CDS: -5.46 Total: -113.80 kcal Atomic # 14 Polarization: 45.75 SS G_CDS: 2.03 Total: 47.78 kcal Total: -63.75 2.28 -61.47 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092803822.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.358 kcal (2) G-P(sol) polarization free energy of solvation -63.749 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.391 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.284 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.465 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.107 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds