Wall clock time and date at job start Mon Mar 30 2020 01:26:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08994 * 109.47049 * 2 1 4 4 C 1.52996 * 109.47112 * 119.99793 * 2 1 3 5 5 C 1.53006 * 109.46977 * 179.97438 * 4 2 1 6 6 C 1.52988 * 109.47330 * 300.00235 * 5 4 2 7 7 C 1.53003 * 109.47220 * 60.00239 * 6 5 4 8 8 H 1.08994 * 109.47260 * 59.99541 * 7 6 5 9 9 C 1.53001 * 109.47067 * 179.97438 * 7 6 5 10 10 N 1.46901 * 109.47114 * 294.99447 * 9 7 6 11 11 C 1.46895 * 110.99970 * 294.30435 * 10 9 7 12 12 C 1.53243 * 109.33898 * 172.74582 * 11 10 9 13 13 N 1.47084 * 108.51968 * 53.82918 * 12 11 10 14 14 C 1.36933 * 120.87894 * 128.79690 * 13 12 11 15 15 H 1.08003 * 120.00220 * 206.99324 * 14 13 12 16 16 C 1.38813 * 120.00321 * 26.98542 * 14 13 12 17 17 N 1.31620 * 119.99746 * 17.15668 * 16 14 13 18 18 Si 1.86796 * 120.00271 * 197.14684 * 16 14 13 19 19 H 1.48502 * 109.46946 * 94.12615 * 18 16 14 20 20 H 1.48495 * 109.47702 * 214.12721 * 18 16 14 21 21 H 1.48502 * 109.47488 * 334.13170 * 18 16 14 22 22 C 1.47073 * 118.23891 * 308.81683 * 13 12 11 23 23 C 1.46901 * 110.99730 * 170.00159 * 10 9 7 24 24 C 1.53000 * 109.46604 * 299.99476 * 7 6 5 25 25 H 1.09003 * 109.47045 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.47009 * 300.00109 * 1 2 3 27 27 H 1.09001 * 109.47459 * 59.99782 * 1 2 3 28 28 H 1.08992 * 109.47840 * 300.00198 * 4 2 1 29 29 H 1.09008 * 109.46810 * 60.00326 * 4 2 1 30 30 H 1.08999 * 109.46741 * 60.00958 * 5 4 2 31 31 H 1.09001 * 109.46838 * 179.97438 * 5 4 2 32 32 H 1.08999 * 109.47799 * 300.00076 * 6 5 4 33 33 H 1.09005 * 109.47490 * 179.97438 * 6 5 4 34 34 H 1.08998 * 109.47017 * 174.99597 * 9 7 6 35 35 H 1.08998 * 109.47442 * 55.00148 * 9 7 6 36 36 H 1.08999 * 109.49627 * 292.70589 * 11 10 9 37 37 H 1.08996 * 109.49314 * 52.78499 * 11 10 9 38 38 H 1.09002 * 109.62609 * 294.12083 * 12 11 10 39 39 H 1.09000 * 109.79187 * 173.63377 * 12 11 10 40 40 H 0.96997 * 119.99977 * 180.02562 * 17 16 14 41 41 H 1.09000 * 109.62931 * 291.47757 * 22 13 12 42 42 H 1.08999 * 109.78932 * 170.99196 * 22 13 12 43 43 H 1.09002 * 109.49307 * 307.21285 * 23 10 9 44 44 H 1.08997 * 109.49272 * 67.26888 * 23 10 9 45 45 H 1.09007 * 109.47107 * 180.02562 * 24 7 6 46 46 H 1.08994 * 109.47365 * 300.00001 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 3.5700 -0.7217 1.2489 6 6 4.0795 -1.4433 -0.0003 7 6 3.5695 -0.7220 -1.2495 8 1 3.9331 0.3055 -1.2497 9 6 4.0796 -1.4433 -2.4988 10 7 5.5436 -1.3395 -2.5606 11 6 5.9648 0.0541 -2.7564 12 6 7.4896 0.1453 -2.6345 13 7 8.0914 -0.8227 -3.5640 14 6 9.0650 -0.4378 -4.4466 15 1 9.1942 -0.9734 -5.3755 16 6 9.8859 0.6409 -4.1475 17 7 9.9707 1.0800 -2.9097 18 14 10.8703 1.4692 -5.5018 19 1 10.1067 2.6277 -6.0310 20 1 12.1676 1.9402 -4.9537 21 1 11.1192 0.4983 -6.5976 22 6 7.6194 -2.2150 -3.5207 23 6 6.0895 -2.2133 -3.6078 24 6 2.0395 -0.7216 -1.2492 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3634 0.5139 -0.8900 28 1 1.6767 -0.2075 2.1392 29 1 1.6766 -1.7489 1.2492 30 1 3.9336 0.3058 1.2488 31 1 3.9333 -1.2351 2.1391 32 1 3.7159 -2.4708 -0.0002 33 1 5.1695 -1.4433 -0.0008 34 1 3.6450 -0.9838 -3.3865 35 1 3.7912 -2.4935 -2.4552 36 1 5.6583 0.3910 -3.7467 37 1 5.5008 0.6843 -1.9977 38 1 7.7901 -0.0916 -1.6138 39 1 7.8207 1.1521 -2.8893 40 1 10.5439 1.8340 -2.7007 41 1 7.9323 -2.6788 -2.5852 42 1 8.0334 -2.7713 -4.3616 43 1 5.7160 -3.2275 -3.4664 44 1 5.7809 -1.8451 -4.5861 45 1 1.6761 -0.2082 -2.1395 46 1 1.6759 -1.7491 -1.2490 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000092803826.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:26:40 Heat of formation + Delta-G solvation = -1.990929 kcal Electronic energy + Delta-G solvation = -21427.465135 eV Core-core repulsion = 18544.226878 eV Total energy + Delta-G solvation = -2883.238256 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 266.205 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -39.25759 -37.62326 -34.60493 -32.60825 -31.64912 -30.50412 -29.85949 -26.94961 -26.30912 -24.39267 -22.71903 -22.33240 -21.83003 -20.10180 -19.59067 -18.94994 -16.70864 -15.36650 -15.23516 -14.62251 -14.53102 -14.39255 -14.03985 -13.92021 -13.50710 -13.39765 -13.24558 -12.87395 -12.54260 -12.40120 -11.97264 -11.72717 -11.58655 -11.40375 -11.21076 -11.03357 -10.91637 -10.78279 -10.71321 -10.48267 -10.28457 -10.21477 -9.99217 -9.90461 -9.88267 -9.65996 -9.46391 -8.46626 -7.69502 -6.61561 -5.74481 -3.15604 3.39677 3.46623 3.48099 4.38584 4.53332 4.66618 4.74624 4.85868 5.10003 5.23233 5.38849 5.41853 5.44952 5.49438 5.53022 5.56462 5.61398 5.67810 5.75026 5.83686 5.85924 5.93490 5.98159 6.01447 6.04229 6.09194 6.20985 6.25007 6.26548 6.29943 6.35426 6.39877 6.44726 6.57136 6.67618 6.70068 6.77438 6.99165 7.31127 7.69643 7.73287 7.78550 7.88307 8.47684 9.25360 9.88947 10.48017 11.34227 Molecular weight = 266.21amu Principal moments of inertia in cm(-1) A = 0.033476 B = 0.004088 C = 0.003980 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 836.222619 B = 6847.596726 C = 7034.205533 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.092 4.092 3 H 0.068 0.932 4 C -0.112 4.112 5 C -0.121 4.121 6 C -0.103 4.103 7 C -0.083 4.083 8 H 0.071 0.929 9 C 0.060 3.940 10 N -0.529 5.529 11 C 0.034 3.966 12 C 0.179 3.821 13 N -0.595 5.595 14 C -0.251 4.251 15 H 0.065 0.935 16 C 0.001 3.999 17 N -0.903 5.903 18 Si 0.902 3.098 19 H -0.289 1.289 20 H -0.291 1.291 21 H -0.279 1.279 22 C 0.150 3.850 23 C 0.045 3.955 24 C -0.107 4.107 25 H 0.052 0.948 26 H 0.051 0.949 27 H 0.052 0.948 28 H 0.055 0.945 29 H 0.058 0.942 30 H 0.060 0.940 31 H 0.057 0.943 32 H 0.053 0.947 33 H 0.078 0.922 34 H 0.023 0.977 35 H 0.064 0.936 36 H 0.021 0.979 37 H 0.062 0.938 38 H 0.025 0.975 39 H 0.086 0.914 40 H 0.253 0.747 41 H 0.025 0.975 42 H 0.053 0.947 43 H 0.059 0.941 44 H 0.025 0.975 45 H 0.057 0.943 46 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.044 -3.601 5.891 18.390 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.110 4.110 3 H 0.086 0.914 4 C -0.150 4.150 5 C -0.159 4.159 6 C -0.141 4.141 7 C -0.102 4.102 8 H 0.090 0.910 9 C -0.069 4.069 10 N -0.254 5.254 11 C -0.095 4.095 12 C 0.053 3.947 13 N -0.319 5.319 14 C -0.381 4.381 15 H 0.083 0.917 16 C -0.197 4.197 17 N -0.547 5.547 18 Si 0.732 3.268 19 H -0.216 1.216 20 H -0.218 1.218 21 H -0.205 1.205 22 C 0.023 3.977 23 C -0.085 4.085 24 C -0.145 4.145 25 H 0.071 0.929 26 H 0.070 0.930 27 H 0.071 0.929 28 H 0.074 0.926 29 H 0.077 0.923 30 H 0.078 0.922 31 H 0.076 0.924 32 H 0.072 0.928 33 H 0.097 0.903 34 H 0.041 0.959 35 H 0.083 0.917 36 H 0.040 0.960 37 H 0.080 0.920 38 H 0.043 0.957 39 H 0.104 0.896 40 H 0.063 0.937 41 H 0.042 0.958 42 H 0.072 0.928 43 H 0.078 0.922 44 H 0.043 0.957 45 H 0.075 0.925 46 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -16.717 -3.638 6.382 18.260 hybrid contribution 0.143 0.772 -1.462 1.659 sum -16.574 -2.866 4.920 17.525 Atomic orbital electron populations 1.21834 0.95680 1.01534 1.01341 1.21117 0.94910 0.99749 0.95246 0.91360 1.21589 0.96115 1.00249 0.97012 1.21566 0.94970 1.00993 0.98355 1.21438 1.01909 0.98075 0.92651 1.21171 0.93857 1.00187 0.94955 0.91026 1.22125 0.89052 0.99737 0.95974 1.61933 1.07563 1.08920 1.46974 1.22917 1.00666 0.87807 0.98090 1.20838 0.85594 0.95551 0.92719 1.44114 1.42761 1.02720 1.42287 1.19218 1.08619 1.13470 0.96802 0.91709 1.25019 0.97603 1.01289 0.95802 1.70040 1.40834 1.27569 1.16302 0.86280 0.79287 0.79715 0.81538 1.21572 1.21766 1.20452 1.20958 0.90140 0.87971 0.98649 1.22596 0.98482 0.95383 0.92009 1.21612 0.95509 1.00329 0.97071 0.92886 0.92972 0.92893 0.92608 0.92304 0.92168 0.92376 0.92828 0.90346 0.95909 0.91729 0.96038 0.91953 0.95672 0.89629 0.93690 0.95756 0.92806 0.92236 0.95694 0.92463 0.92222 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.23 9.19 37.16 0.34 -0.89 16 2 C -0.09 -0.90 2.72 -90.62 -0.25 -1.15 16 3 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 4 C -0.11 -1.10 5.20 -26.73 -0.14 -1.24 16 5 C -0.12 -1.36 5.92 -26.73 -0.16 -1.52 16 6 C -0.10 -1.33 5.09 -26.74 -0.14 -1.46 16 7 C -0.08 -1.07 2.11 -90.62 -0.19 -1.26 16 8 H 0.07 1.03 6.19 -51.93 -0.32 0.70 16 9 C 0.06 0.87 4.35 -3.82 -0.02 0.85 16 10 N -0.53 -9.53 4.08 -234.32 -0.96 -10.49 16 11 C 0.03 0.69 5.46 -3.70 -0.02 0.67 16 12 C 0.18 4.41 5.42 -3.60 -0.02 4.39 16 13 N -0.60 -15.45 3.03 -172.01 -0.52 -15.97 16 14 C -0.25 -7.06 9.63 -15.06 -0.15 -7.21 16 15 H 0.07 1.79 7.89 -52.48 -0.41 1.37 16 16 C 0.00 0.04 4.93 -17.43 -0.09 -0.05 16 17 N -0.90 -26.59 11.19 55.49 0.62 -25.96 16 18 Si 0.90 21.98 29.59 -169.99 -5.03 16.95 16 19 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 20 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 21 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 22 C 0.15 3.27 6.69 -3.60 -0.02 3.25 16 23 C 0.04 0.83 5.62 -3.70 -0.02 0.81 16 24 C -0.11 -1.16 4.48 -26.73 -0.12 -1.28 16 25 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 26 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 27 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 28 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.06 0.56 8.14 -51.92 -0.42 0.14 16 30 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 31 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 33 H 0.08 1.21 7.75 -51.93 -0.40 0.80 16 34 H 0.02 0.34 8.12 -51.93 -0.42 -0.08 16 35 H 0.06 0.89 7.97 -51.93 -0.41 0.47 16 36 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 37 H 0.06 1.14 6.07 -51.93 -0.32 0.83 16 38 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.09 2.33 6.14 -51.93 -0.32 2.01 16 40 H 0.25 7.19 8.31 -40.82 -0.34 6.85 16 41 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 42 H 0.05 1.13 7.96 -51.93 -0.41 0.72 16 43 H 0.06 0.95 7.99 -51.93 -0.41 0.54 16 44 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 45 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 46 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 LS Contribution 342.57 15.07 5.16 5.16 Total: -1.00 -29.10 342.57 -10.62 -39.72 By element: Atomic # 1 Polarization: 5.59 SS G_CDS: -8.91 Total: -3.32 kcal Atomic # 6 Polarization: -5.11 SS G_CDS: -0.98 Total: -6.09 kcal Atomic # 7 Polarization: -51.56 SS G_CDS: -0.86 Total: -52.42 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.03 Total: 16.95 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -29.10 -10.62 -39.72 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092803826.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.729 kcal (2) G-P(sol) polarization free energy of solvation -29.100 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.629 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.620 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.720 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.991 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds