Wall clock time and date at job start Mon Mar 30 2020 01:26:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08994 * 109.47049 * 2 1 4 4 C 1.52996 * 109.47112 * 119.99793 * 2 1 3 5 5 C 1.53006 * 109.46977 * 179.97438 * 4 2 1 6 6 C 1.52988 * 109.47330 * 300.00235 * 5 4 2 7 7 C 1.53003 * 109.47220 * 60.00239 * 6 5 4 8 8 H 1.08994 * 109.47260 * 59.99541 * 7 6 5 9 9 C 1.53001 * 109.47067 * 179.97438 * 7 6 5 10 10 N 1.46901 * 109.47114 * 294.99447 * 9 7 6 11 11 C 1.46895 * 110.99970 * 294.30435 * 10 9 7 12 12 C 1.53243 * 109.33898 * 172.74582 * 11 10 9 13 13 N 1.47084 * 108.51968 * 53.82918 * 12 11 10 14 14 C 1.36933 * 120.87894 * 128.79690 * 13 12 11 15 15 H 1.08003 * 120.00220 * 206.99324 * 14 13 12 16 16 C 1.38813 * 120.00321 * 26.98542 * 14 13 12 17 17 N 1.31620 * 119.99746 * 17.15668 * 16 14 13 18 18 Si 1.86796 * 120.00271 * 197.14684 * 16 14 13 19 19 H 1.48502 * 109.46946 * 94.12615 * 18 16 14 20 20 H 1.48495 * 109.47702 * 214.12721 * 18 16 14 21 21 H 1.48502 * 109.47488 * 334.13170 * 18 16 14 22 22 C 1.47073 * 118.23891 * 308.81683 * 13 12 11 23 23 C 1.46901 * 110.99730 * 170.00159 * 10 9 7 24 24 C 1.53000 * 109.46604 * 299.99476 * 7 6 5 25 25 H 1.09003 * 109.47045 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.47009 * 300.00109 * 1 2 3 27 27 H 1.09001 * 109.47459 * 59.99782 * 1 2 3 28 28 H 1.08992 * 109.47840 * 300.00198 * 4 2 1 29 29 H 1.09008 * 109.46810 * 60.00326 * 4 2 1 30 30 H 1.08999 * 109.46741 * 60.00958 * 5 4 2 31 31 H 1.09001 * 109.46838 * 179.97438 * 5 4 2 32 32 H 1.08999 * 109.47799 * 300.00076 * 6 5 4 33 33 H 1.09005 * 109.47490 * 179.97438 * 6 5 4 34 34 H 1.08998 * 109.47017 * 174.99597 * 9 7 6 35 35 H 1.08998 * 109.47442 * 55.00148 * 9 7 6 36 36 H 1.08999 * 109.49627 * 292.70589 * 11 10 9 37 37 H 1.08996 * 109.49314 * 52.78499 * 11 10 9 38 38 H 1.09002 * 109.62609 * 294.12083 * 12 11 10 39 39 H 1.09000 * 109.79187 * 173.63377 * 12 11 10 40 40 H 0.96997 * 119.99977 * 180.02562 * 17 16 14 41 41 H 1.09000 * 109.62931 * 291.47757 * 22 13 12 42 42 H 1.08999 * 109.78932 * 170.99196 * 22 13 12 43 43 H 1.09002 * 109.49307 * 307.21285 * 23 10 9 44 44 H 1.08997 * 109.49272 * 67.26888 * 23 10 9 45 45 H 1.09007 * 109.47107 * 180.02562 * 24 7 6 46 46 H 1.08994 * 109.47365 * 300.00001 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 3.5700 -0.7217 1.2489 6 6 4.0795 -1.4433 -0.0003 7 6 3.5695 -0.7220 -1.2495 8 1 3.9331 0.3055 -1.2497 9 6 4.0796 -1.4433 -2.4988 10 7 5.5436 -1.3395 -2.5606 11 6 5.9648 0.0541 -2.7564 12 6 7.4896 0.1453 -2.6345 13 7 8.0914 -0.8227 -3.5640 14 6 9.0650 -0.4378 -4.4466 15 1 9.1942 -0.9734 -5.3755 16 6 9.8859 0.6409 -4.1475 17 7 9.9707 1.0800 -2.9097 18 14 10.8703 1.4692 -5.5018 19 1 10.1067 2.6277 -6.0310 20 1 12.1676 1.9402 -4.9537 21 1 11.1192 0.4983 -6.5976 22 6 7.6194 -2.2150 -3.5207 23 6 6.0895 -2.2133 -3.6078 24 6 2.0395 -0.7216 -1.2492 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3634 0.5139 -0.8900 28 1 1.6767 -0.2075 2.1392 29 1 1.6766 -1.7489 1.2492 30 1 3.9336 0.3058 1.2488 31 1 3.9333 -1.2351 2.1391 32 1 3.7159 -2.4708 -0.0002 33 1 5.1695 -1.4433 -0.0008 34 1 3.6450 -0.9838 -3.3865 35 1 3.7912 -2.4935 -2.4552 36 1 5.6583 0.3910 -3.7467 37 1 5.5008 0.6843 -1.9977 38 1 7.7901 -0.0916 -1.6138 39 1 7.8207 1.1521 -2.8893 40 1 10.5439 1.8340 -2.7007 41 1 7.9323 -2.6788 -2.5852 42 1 8.0334 -2.7713 -4.3616 43 1 5.7160 -3.2275 -3.4664 44 1 5.7809 -1.8451 -4.5861 45 1 1.6761 -0.2082 -2.1395 46 1 1.6759 -1.7491 -1.2490 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000092803826.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:26:40 Heat of formation + Delta-G solvation = -17.488804 kcal Electronic energy + Delta-G solvation = -21428.137173 eV Core-core repulsion = 18544.226878 eV Total energy + Delta-G solvation = -2883.910294 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 266.205 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.39955 -39.04356 -36.27891 -33.95065 -32.93253 -31.92822 -31.64181 -28.59492 -27.12455 -25.98175 -24.39074 -24.02069 -22.76169 -21.20611 -20.72587 -20.47548 -18.69799 -17.06290 -16.32110 -16.22468 -15.84977 -15.52675 -15.32955 -15.27778 -15.09305 -14.89090 -14.74013 -14.15098 -13.96171 -13.27581 -13.15774 -13.10650 -12.95307 -12.63659 -12.63420 -12.52417 -12.33246 -12.17082 -12.03821 -11.95499 -11.80676 -11.72710 -11.48089 -11.41577 -11.11462 -10.80582 -10.78976 -10.59093 -9.19910 -8.68290 -7.88540 -5.33807 1.45543 1.46625 1.56349 2.49794 3.01932 3.26596 3.67037 3.75045 3.87237 3.96144 4.15871 4.29077 4.34104 4.39623 4.41432 4.51893 4.52253 4.65336 4.65514 4.67479 4.72223 4.80249 4.84211 4.87271 4.87824 4.96552 5.02118 5.03296 5.09279 5.15746 5.21671 5.26939 5.33901 5.37129 5.45417 5.47160 5.53826 5.59419 5.63601 5.66778 5.70567 6.22575 6.34311 6.37131 7.12141 7.82854 8.37731 9.18272 Molecular weight = 266.21amu Principal moments of inertia in cm(-1) A = 0.033476 B = 0.004088 C = 0.003980 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 836.222619 B = 6847.596726 C = 7034.205533 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.092 4.092 3 H 0.059 0.941 4 C -0.107 4.107 5 C -0.120 4.120 6 C -0.099 4.099 7 C -0.079 4.079 8 H 0.054 0.946 9 C 0.063 3.937 10 N -0.536 5.536 11 C 0.054 3.946 12 C 0.188 3.812 13 N -0.615 5.615 14 C -0.267 4.267 15 H 0.067 0.933 16 C -0.051 4.051 17 N -0.935 5.935 18 Si 0.969 3.031 19 H -0.286 1.286 20 H -0.293 1.293 21 H -0.268 1.268 22 C 0.145 3.855 23 C 0.055 3.945 24 C -0.101 4.101 25 H 0.059 0.941 26 H 0.058 0.942 27 H 0.054 0.946 28 H 0.066 0.934 29 H 0.066 0.934 30 H 0.049 0.951 31 H 0.062 0.938 32 H 0.062 0.938 33 H 0.047 0.953 34 H 0.025 0.975 35 H 0.083 0.917 36 H 0.013 0.987 37 H 0.078 0.922 38 H -0.003 1.003 39 H 0.053 0.947 40 H 0.250 0.750 41 H 0.015 0.985 42 H 0.059 0.941 43 H 0.093 0.907 44 H 0.020 0.980 45 H 0.059 0.941 46 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.164 -4.435 5.515 20.429 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.110 4.110 3 H 0.077 0.923 4 C -0.145 4.145 5 C -0.158 4.158 6 C -0.136 4.136 7 C -0.098 4.098 8 H 0.072 0.928 9 C -0.065 4.065 10 N -0.260 5.260 11 C -0.076 4.076 12 C 0.062 3.938 13 N -0.339 5.339 14 C -0.397 4.397 15 H 0.085 0.915 16 C -0.246 4.246 17 N -0.581 5.581 18 Si 0.797 3.203 19 H -0.213 1.213 20 H -0.220 1.220 21 H -0.192 1.192 22 C 0.019 3.981 23 C -0.074 4.074 24 C -0.139 4.139 25 H 0.078 0.922 26 H 0.077 0.923 27 H 0.073 0.927 28 H 0.084 0.916 29 H 0.085 0.915 30 H 0.068 0.932 31 H 0.081 0.919 32 H 0.080 0.920 33 H 0.066 0.934 34 H 0.043 0.957 35 H 0.101 0.899 36 H 0.031 0.969 37 H 0.096 0.904 38 H 0.015 0.985 39 H 0.072 0.928 40 H 0.059 0.941 41 H 0.033 0.967 42 H 0.078 0.922 43 H 0.112 0.888 44 H 0.038 0.962 45 H 0.078 0.922 46 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -18.866 -4.498 6.001 20.302 hybrid contribution 0.817 0.971 -1.302 1.818 sum -18.049 -3.528 4.698 18.981 Atomic orbital electron populations 1.21794 0.94241 1.02127 1.01854 1.21112 0.96072 0.99085 0.94765 0.92270 1.21558 0.94592 1.00865 0.97464 1.21545 0.96347 1.00158 0.97727 1.21358 0.99942 0.98822 0.93496 1.21128 0.95591 0.98836 0.94198 0.92775 1.22209 0.86336 1.01153 0.96798 1.61886 1.10135 1.07289 1.46739 1.22550 0.97195 0.89747 0.98082 1.20576 0.88650 0.93697 0.90844 1.44404 1.42800 1.04585 1.42101 1.19561 1.08993 1.13778 0.97335 0.91517 1.25813 0.98985 1.01941 0.97864 1.70201 1.41776 1.27925 1.18226 0.85222 0.77459 0.78622 0.78958 1.21277 1.21995 1.19208 1.21114 0.92737 0.85895 0.98344 1.22456 0.95790 0.97265 0.91902 1.21560 0.93413 1.01160 0.97746 0.92223 0.92264 0.92676 0.91569 0.91529 0.93220 0.91897 0.91958 0.93431 0.95707 0.89901 0.96886 0.90420 0.98534 0.92850 0.94064 0.96707 0.92230 0.88833 0.96171 0.92210 0.91186 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.99 9.19 71.98 0.66 -1.33 16 2 C -0.09 -1.59 2.72 -10.80 -0.03 -1.62 16 3 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 4 C -0.11 -1.84 5.20 30.59 0.16 -1.68 16 5 C -0.12 -2.55 5.92 30.59 0.18 -2.37 16 6 C -0.10 -2.42 5.09 30.59 0.16 -2.26 16 7 C -0.08 -1.91 2.11 -10.79 -0.02 -1.94 16 8 H 0.05 1.51 6.19 -2.39 -0.01 1.50 16 9 C 0.06 1.70 4.35 86.30 0.38 2.07 16 10 N -0.54 -18.79 4.08 -895.26 -3.65 -22.45 16 11 C 0.05 2.17 5.46 86.39 0.47 2.64 16 12 C 0.19 9.64 5.42 86.35 0.47 10.11 16 13 N -0.61 -32.57 3.03 -698.12 -2.12 -34.68 16 14 C -0.27 -15.21 9.63 84.03 0.81 -14.40 16 15 H 0.07 3.70 7.89 -2.91 -0.02 3.67 16 16 C -0.05 -2.91 4.93 84.86 0.42 -2.49 16 17 N -0.94 -56.84 11.19 21.65 0.24 -56.60 16 18 Si 0.97 45.79 29.59 68.60 2.03 47.81 16 19 H -0.29 -13.29 7.11 99.48 0.71 -12.59 16 20 H -0.29 -13.86 7.11 99.48 0.71 -13.16 16 21 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 22 C 0.14 6.32 6.69 86.35 0.58 6.90 16 23 C 0.06 1.95 5.62 86.38 0.49 2.44 16 24 C -0.10 -1.92 4.48 30.59 0.14 -1.78 16 25 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 26 H 0.06 0.75 8.14 -2.38 -0.02 0.73 16 27 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 28 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 29 H 0.07 1.06 8.14 -2.38 -0.02 1.04 16 30 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 31 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 32 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 33 H 0.05 1.46 7.75 -2.38 -0.02 1.44 16 34 H 0.02 0.68 8.12 -2.39 -0.02 0.66 16 35 H 0.08 1.99 7.97 -2.39 -0.02 1.97 16 36 H 0.01 0.55 8.14 -2.39 -0.02 0.53 16 37 H 0.08 2.88 6.07 -2.39 -0.01 2.86 16 38 H 0.00 -0.19 8.14 -2.39 -0.02 -0.21 16 39 H 0.05 3.05 6.14 -2.39 -0.01 3.04 16 40 H 0.25 14.66 8.31 -92.71 -0.77 13.89 16 41 H 0.01 0.68 8.14 -2.39 -0.02 0.66 16 42 H 0.06 2.48 7.96 -2.39 -0.02 2.46 16 43 H 0.09 2.71 7.99 -2.39 -0.02 2.69 16 44 H 0.02 0.74 8.14 -2.39 -0.02 0.72 16 45 H 0.06 1.13 8.14 -2.38 -0.02 1.11 16 46 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 Total: -1.00 -63.60 342.57 2.24 -61.36 By element: Atomic # 1 Polarization: 9.38 SS G_CDS: 0.90 Total: 10.27 kcal Atomic # 6 Polarization: -10.57 SS G_CDS: 4.85 Total: -5.72 kcal Atomic # 7 Polarization: -108.20 SS G_CDS: -5.53 Total: -113.73 kcal Atomic # 14 Polarization: 45.79 SS G_CDS: 2.03 Total: 47.81 kcal Total: -63.60 2.24 -61.36 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092803826.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.871 kcal (2) G-P(sol) polarization free energy of solvation -63.603 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.732 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.243 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.360 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.489 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds