Wall clock time and date at job start Mon Mar 30 2020 00:31:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47313 * 2 1 4 4 C 1.53008 * 109.46771 * 119.99541 * 2 1 3 5 5 C 1.52997 * 109.46844 * 175.00118 * 4 2 1 6 6 N 1.46900 * 109.47172 * 182.64675 * 5 4 2 7 7 C 1.46899 * 111.00107 * 195.73445 * 6 5 4 8 8 C 1.50702 * 109.47167 * 164.79239 * 7 6 5 9 9 H 1.07998 * 119.99949 * 4.91917 * 8 7 6 10 10 C 1.37879 * 119.99849 * 184.91551 * 8 7 6 11 11 N 1.31518 * 119.99979 * 359.97438 * 10 8 7 12 12 Si 1.86792 * 119.99961 * 180.02562 * 10 8 7 13 13 H 1.48496 * 109.47353 * 359.97438 * 12 10 8 14 14 H 1.48498 * 109.47718 * 120.00142 * 12 10 8 15 15 H 1.48507 * 109.47307 * 239.99939 * 12 10 8 16 16 C 1.46890 * 111.00344 * 71.77557 * 6 5 4 17 17 C 1.50698 * 109.47387 * 66.07262 * 16 6 5 18 18 C 1.35352 * 126.91305 * 93.51434 * 17 16 6 19 19 N 1.33767 * 106.50121 * 179.90764 * 18 17 16 20 20 N 1.28637 * 108.88473 * 0.36913 * 19 18 17 21 21 N 1.28720 * 110.17209 * 359.76701 * 20 19 18 22 22 C 1.46507 * 125.85974 * 179.97438 * 21 20 19 23 23 H 1.08998 * 109.47347 * 300.00386 * 1 2 3 24 24 H 1.09005 * 109.47058 * 60.00206 * 1 2 3 25 25 H 1.08999 * 109.47463 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.47347 * 239.99614 * 2 1 3 27 27 H 1.08998 * 109.47229 * 59.99542 * 3 2 1 28 28 H 1.08998 * 109.47618 * 179.97438 * 3 2 1 29 29 H 1.09005 * 109.46890 * 299.99897 * 3 2 1 30 30 H 1.09003 * 109.46966 * 55.00215 * 4 2 1 31 31 H 1.08999 * 109.47357 * 294.99790 * 4 2 1 32 32 H 1.08997 * 109.47371 * 62.64288 * 5 4 2 33 33 H 1.09000 * 109.47395 * 302.64296 * 5 4 2 34 34 H 1.09007 * 109.46660 * 284.79253 * 7 6 5 35 35 H 1.08997 * 109.47365 * 44.78958 * 7 6 5 36 36 H 0.97003 * 119.99989 * 179.97438 * 11 10 8 37 37 H 1.09002 * 109.47618 * 186.07388 * 16 6 5 38 38 H 1.09002 * 109.47412 * 306.07302 * 16 6 5 39 39 H 1.08009 * 126.74817 * 0.04517 * 18 17 16 40 40 H 1.08999 * 109.46761 * 275.52206 * 22 21 20 41 41 H 1.08992 * 109.47722 * 35.52970 * 22 21 20 42 42 H 1.09007 * 109.46433 * 155.53163 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 1.2494 5 6 3.5647 -0.8310 1.1882 6 7 4.0491 -1.5788 2.3561 7 6 5.4947 -1.3919 2.5384 8 6 5.8898 -1.8466 3.9198 9 1 5.1582 -2.3086 4.5660 10 6 7.1853 -1.6727 4.3585 11 7 8.0764 -1.1106 3.5713 12 14 7.6752 -2.2369 6.0705 13 1 6.4980 -2.8338 6.7508 14 1 8.7549 -3.2512 5.9675 15 1 8.1623 -1.0736 6.8546 16 6 3.7124 -3.0043 2.2452 17 6 4.4698 -3.6112 1.0924 18 6 5.6662 -4.2418 1.1477 19 7 5.9556 -4.6178 -0.1030 20 7 5.0054 -4.2379 -0.8824 21 7 4.0936 -3.6301 -0.2072 22 6 2.8604 -3.0569 -0.7523 23 1 -0.3634 0.5139 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0276 0.0005 26 1 1.8934 -0.5139 -0.8899 27 1 1.6767 1.9563 0.8899 28 1 3.1300 1.4425 0.0005 29 1 1.6767 1.9563 -0.8900 30 1 1.6053 -1.7198 1.2953 31 1 1.7516 -0.1582 2.1371 32 1 4.0013 0.1677 1.1895 33 1 3.8551 -1.3531 0.2765 34 1 6.0336 -1.9790 1.7946 35 1 5.7428 -0.3374 2.4181 36 1 8.9877 -0.9880 3.8801 37 1 3.9857 -3.5151 3.1685 38 1 2.6415 -3.1124 2.0735 39 1 6.2677 -4.4104 2.0288 40 1 3.0618 -2.0544 -1.1298 41 1 2.4960 -3.6849 -1.5651 42 1 2.1060 -3.0047 0.0328 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000093100794.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:31:56 Heat of formation + Delta-G solvation = 93.818065 kcal Electronic energy + Delta-G solvation = -21543.533260 eV Core-core repulsion = 18560.909250 eV Total energy + Delta-G solvation = -2982.624010 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.180 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -42.83468 -38.03902 -35.76610 -34.24110 -32.58376 -30.99030 -29.21356 -27.72839 -27.30706 -26.71298 -25.34213 -22.64244 -21.92366 -21.37727 -20.07231 -19.31719 -16.95137 -16.58826 -16.26471 -15.54901 -14.90014 -14.49351 -14.36897 -14.08707 -13.94333 -13.52534 -13.28574 -13.11195 -12.78825 -12.37469 -12.31178 -12.14779 -11.74064 -11.57367 -11.26510 -11.14772 -11.00792 -10.96108 -10.72038 -10.53327 -10.49914 -10.41177 -10.18187 -9.87591 -9.60813 -9.27242 -8.58318 -8.42582 -7.50190 -6.03714 -4.05921 2.03848 2.73582 3.14935 3.30781 3.39064 3.42076 4.38252 4.59699 4.63690 4.81455 4.89747 4.95637 4.99293 5.13454 5.24539 5.29740 5.33600 5.46490 5.55951 5.62382 5.66203 5.70359 5.79051 5.83682 5.93448 6.04861 6.08791 6.14526 6.16287 6.21021 6.36089 6.43620 6.53307 6.83536 7.00183 7.13780 7.29945 7.73396 7.95672 8.08641 8.44158 8.99726 9.00802 9.58376 11.06791 Molecular weight = 266.18amu Principal moments of inertia in cm(-1) A = 0.016280 B = 0.006837 C = 0.005313 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1719.468491 B = 4094.592811 C = 5269.061850 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.099 4.099 3 C -0.149 4.149 4 C -0.112 4.112 5 C 0.039 3.961 6 N -0.518 5.518 7 C 0.185 3.815 8 C -0.506 4.506 9 H 0.064 0.936 10 C 0.058 3.942 11 N -0.895 5.895 12 Si 0.895 3.105 13 H -0.272 1.272 14 H -0.284 1.284 15 H -0.285 1.285 16 C 0.132 3.868 17 C -0.035 4.035 18 C -0.022 4.022 19 N -0.277 5.277 20 N -0.109 5.109 21 N -0.294 5.294 22 C 0.078 3.922 23 H 0.055 0.945 24 H 0.051 0.949 25 H 0.052 0.948 26 H 0.064 0.936 27 H 0.056 0.944 28 H 0.058 0.942 29 H 0.049 0.951 30 H 0.057 0.943 31 H 0.073 0.927 32 H 0.072 0.928 33 H 0.025 0.975 34 H 0.004 0.996 35 H 0.029 0.971 36 H 0.261 0.739 37 H 0.108 0.892 38 H 0.068 0.932 39 H 0.192 0.808 40 H 0.090 0.910 41 H 0.092 0.908 42 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.962 0.309 -6.618 16.364 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.118 4.118 3 C -0.206 4.206 4 C -0.150 4.150 5 C -0.089 4.089 6 N -0.241 5.241 7 C 0.061 3.939 8 C -0.545 4.545 9 H 0.082 0.918 10 C -0.144 4.144 11 N -0.534 5.534 12 Si 0.723 3.277 13 H -0.196 1.196 14 H -0.211 1.211 15 H -0.211 1.211 16 C 0.001 3.999 17 C -0.168 4.168 18 C -0.180 4.180 19 N -0.143 5.143 20 N -0.088 5.088 21 N -0.089 5.089 22 C -0.064 4.064 23 H 0.074 0.926 24 H 0.070 0.930 25 H 0.071 0.929 26 H 0.082 0.918 27 H 0.075 0.925 28 H 0.077 0.923 29 H 0.068 0.932 30 H 0.075 0.925 31 H 0.092 0.908 32 H 0.091 0.909 33 H 0.043 0.957 34 H 0.021 0.979 35 H 0.047 0.953 36 H 0.071 0.929 37 H 0.126 0.874 38 H 0.086 0.914 39 H 0.209 0.791 40 H 0.109 0.891 41 H 0.111 0.889 42 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -14.574 0.098 -7.611 16.442 hybrid contribution 0.501 0.014 1.159 1.263 sum -14.072 0.112 -6.452 15.481 Atomic orbital electron populations 1.21833 0.95364 1.01452 1.01639 1.21184 0.95462 0.96793 0.98380 1.21877 1.01563 0.95765 1.01411 1.21750 0.95562 0.99958 0.97739 1.22403 0.94713 0.99291 0.92513 1.62542 1.20407 1.05273 1.35831 1.19905 0.79552 0.97278 0.97191 1.21103 0.94783 1.39370 0.99246 0.91829 1.24962 0.96553 0.95405 0.97460 1.69968 1.03586 1.43646 1.36184 0.86496 0.78523 0.78356 0.84371 1.19641 1.21067 1.21148 1.20904 0.96250 0.89689 0.93009 1.23429 1.00180 1.05893 0.87347 1.23516 0.95867 1.01766 0.96869 1.75006 1.18219 1.19336 1.01690 1.78158 0.96181 1.13010 1.21472 1.47151 1.17168 1.38255 1.06335 1.22425 0.82771 0.99970 1.01215 0.92582 0.92996 0.92919 0.91778 0.92509 0.92277 0.93212 0.92456 0.90847 0.90947 0.95687 0.97874 0.95254 0.92937 0.87415 0.91377 0.79129 0.89127 0.88923 0.88347 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.19 9.19 37.16 0.34 -0.85 16 2 C -0.10 -0.97 2.92 -90.62 -0.26 -1.23 16 3 C -0.15 -1.54 8.95 37.16 0.33 -1.21 16 4 C -0.11 -1.34 4.01 -26.73 -0.11 -1.44 16 5 C 0.04 0.62 4.17 -3.83 -0.02 0.61 16 6 N -0.52 -9.93 4.62 -237.53 -1.10 -11.03 16 7 C 0.19 4.53 4.52 -4.98 -0.02 4.50 16 8 C -0.51 -13.29 8.69 -34.44 -0.30 -13.59 16 9 H 0.06 1.63 7.28 -52.49 -0.38 1.25 16 10 C 0.06 1.58 5.46 -17.82 -0.10 1.48 16 11 N -0.89 -26.04 13.29 55.43 0.74 -25.30 16 12 Si 0.89 20.99 29.54 -169.99 -5.02 15.96 16 13 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 14 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 15 H -0.29 -6.73 7.11 56.52 0.40 -6.32 16 16 C 0.13 2.23 5.32 -4.98 -0.03 2.21 16 17 C -0.03 -0.63 4.70 -82.09 -0.39 -1.02 16 18 C -0.02 -0.46 10.51 -17.74 -0.19 -0.64 16 19 N -0.28 -5.89 12.41 30.24 0.38 -5.51 16 20 N -0.11 -2.12 13.17 60.35 0.79 -1.32 16 21 N -0.29 -4.85 3.37 -63.79 -0.21 -5.06 16 22 C 0.08 0.86 9.03 59.85 0.54 1.40 16 23 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 24 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 25 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 26 H 0.06 0.59 6.33 -51.93 -0.33 0.26 16 27 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 28 H 0.06 0.69 6.62 -51.93 -0.34 0.35 16 29 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.06 0.62 4.94 -51.93 -0.26 0.36 16 31 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 32 H 0.07 1.25 6.29 -51.93 -0.33 0.92 16 33 H 0.03 0.40 3.76 -51.93 -0.20 0.21 16 34 H 0.00 0.09 5.60 -51.93 -0.29 -0.20 16 35 H 0.03 0.80 7.75 -51.93 -0.40 0.40 16 36 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 37 H 0.11 1.92 7.18 -51.93 -0.37 1.55 16 38 H 0.07 0.93 5.63 -51.93 -0.29 0.64 16 39 H 0.19 3.93 8.06 -52.48 -0.42 3.50 16 40 H 0.09 0.96 5.19 -51.93 -0.27 0.69 16 41 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 42 H 0.10 0.92 5.06 -51.93 -0.26 0.66 16 LS Contribution 320.17 15.07 4.82 4.82 Total: -1.00 -30.99 320.17 -6.03 -37.02 By element: Atomic # 1 Polarization: 6.43 SS G_CDS: -6.24 Total: 0.19 kcal Atomic # 6 Polarization: -9.58 SS G_CDS: -0.19 Total: -9.77 kcal Atomic # 7 Polarization: -48.82 SS G_CDS: 0.59 Total: -48.23 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.02 Total: 15.96 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -30.99 -6.03 -37.02 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000093100794.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.840 kcal (2) G-P(sol) polarization free energy of solvation -30.988 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 99.852 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.034 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.022 kcal (6) G-S(sol) free energy of system = (1) + (5) 93.818 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds