Wall clock time and date at job start Mon Mar 30 2020 00:31:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 N 1.28713 * 125.87108 * 2 1 4 4 N 1.28638 * 110.17693 * 179.97438 * 3 2 1 5 5 C 1.33769 * 108.88737 * 359.77059 * 4 3 2 6 6 C 1.35317 * 125.86502 * 179.97438 * 2 1 3 7 7 C 1.50699 * 126.91326 * 359.97438 * 6 2 1 8 8 N 1.46902 * 109.47167 * 272.67571 * 7 6 2 9 9 C 1.46898 * 111.00122 * 200.84025 * 8 7 6 10 10 C 1.50695 * 109.47424 * 97.03984 * 9 8 7 11 11 H 1.08003 * 120.00137 * 353.08229 * 10 9 8 12 12 C 1.37883 * 120.00171 * 173.08585 * 10 9 8 13 13 N 1.31512 * 119.99768 * 359.97438 * 12 10 9 14 14 Si 1.86798 * 120.00015 * 179.97438 * 12 10 9 15 15 H 1.48504 * 109.46945 * 90.00009 * 14 12 10 16 16 H 1.48496 * 109.47018 * 209.99741 * 14 12 10 17 17 H 1.48496 * 109.47423 * 330.00224 * 14 12 10 18 18 C 1.46893 * 111.00157 * 76.87993 * 8 7 6 19 19 C 1.53007 * 109.47443 * 203.45763 * 18 8 7 20 20 C 1.52996 * 109.47107 * 48.51876 * 19 18 8 21 21 C 1.53001 * 109.47428 * 168.52439 * 19 18 8 22 22 C 1.53000 * 109.46707 * 288.52353 * 19 18 8 23 23 H 1.08997 * 109.47125 * 277.61874 * 1 2 3 24 24 H 1.09002 * 109.47035 * 37.61999 * 1 2 3 25 25 H 1.08997 * 109.47283 * 157.61895 * 1 2 3 26 26 H 1.07999 * 126.75720 * 180.23685 * 5 4 3 27 27 H 1.09001 * 109.47156 * 152.67469 * 7 6 2 28 28 H 1.09004 * 109.47542 * 32.67183 * 7 6 2 29 29 H 1.09002 * 109.47097 * 217.03930 * 9 8 7 30 30 H 1.08995 * 109.47120 * 337.03382 * 9 8 7 31 31 H 0.96998 * 120.00107 * 179.97438 * 13 12 10 32 32 H 1.08997 * 109.47757 * 323.45818 * 18 8 7 33 33 H 1.09008 * 109.47235 * 83.45643 * 18 8 7 34 34 H 1.08998 * 109.47032 * 60.00425 * 20 19 18 35 35 H 1.08998 * 109.46803 * 180.02562 * 20 19 18 36 36 H 1.08998 * 109.47296 * 300.00374 * 20 19 18 37 37 H 1.09006 * 109.47011 * 59.99271 * 21 19 18 38 38 H 1.08998 * 109.47303 * 179.97438 * 21 19 18 39 39 H 1.08998 * 109.46902 * 299.99692 * 21 19 18 40 40 H 1.09000 * 109.47795 * 67.57364 * 22 19 18 41 41 H 1.09004 * 109.47100 * 187.57644 * 22 19 18 42 42 H 1.09004 * 109.47283 * 307.57207 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2192 1.0430 0.0000 4 7 3.4576 0.6950 0.0005 5 6 3.5321 -0.6406 0.0060 6 6 2.2578 -1.0966 0.0005 7 6 1.8116 -2.5360 0.0017 8 7 1.6054 -2.9836 1.3856 9 6 1.6581 -4.4487 1.4784 10 6 3.0375 -4.8755 1.9096 11 1 3.8290 -4.1448 1.9880 12 6 3.2893 -6.1988 2.2041 13 7 2.3254 -7.0884 2.1091 14 14 4.9994 -6.7278 2.7379 15 1 5.1069 -6.6363 4.2163 16 1 5.2401 -8.1292 2.3100 17 1 6.0106 -5.8385 2.1122 18 6 0.3394 -2.4673 1.9228 19 6 0.4109 -2.4307 3.4507 20 6 1.7162 -1.7606 3.8843 21 6 -0.7767 -1.6362 3.9980 22 6 0.3646 -3.8588 3.9977 23 1 -0.3633 0.1362 1.0186 24 1 -0.3633 0.8140 -0.6273 25 1 -0.3634 -0.9502 -0.3913 26 1 4.4320 -1.2376 0.0114 27 1 2.5759 -3.1537 -0.4699 28 1 0.8775 -2.6274 -0.5527 29 1 0.9262 -4.7931 2.2091 30 1 1.4312 -4.8829 0.5047 31 1 2.5026 -8.0194 2.3158 32 1 0.1673 -1.4602 1.5429 33 1 -0.4789 -3.1173 1.6127 34 1 1.7492 -0.7432 3.4946 35 1 1.7672 -1.7349 4.9728 36 1 2.5621 -2.3266 3.4945 37 1 -1.7066 -2.1136 3.6889 38 1 -0.7260 -1.6105 5.0865 39 1 -0.7436 -0.6188 3.6083 40 1 1.2777 -4.3846 3.7188 41 1 0.2797 -3.8292 5.0840 42 1 -0.4969 -4.3801 3.5801 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000093101103.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:31:58 Heat of formation + Delta-G solvation = 104.583355 kcal Electronic energy + Delta-G solvation = -21831.141237 eV Core-core repulsion = 18848.984045 eV Total energy + Delta-G solvation = -2982.157192 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.180 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -42.94070 -38.35899 -34.99976 -34.33274 -32.72628 -31.01968 -28.10038 -27.78222 -26.76711 -26.51922 -26.00951 -23.84757 -22.17718 -21.21444 -20.07332 -18.32284 -17.03990 -16.67334 -16.19697 -15.09907 -14.90036 -14.52888 -14.22828 -14.00716 -13.63537 -13.30498 -13.03161 -12.90405 -12.79374 -12.37404 -12.12846 -12.03638 -11.65243 -11.48406 -11.19105 -11.12643 -10.90202 -10.65734 -10.61200 -10.48348 -10.18118 -10.06454 -9.91517 -9.78572 -9.61838 -9.27437 -8.76079 -8.40027 -7.41155 -6.05459 -4.06347 1.88315 2.58449 2.93930 3.30815 3.37928 3.41704 4.39158 4.50621 4.70382 4.86474 4.93865 5.08952 5.15759 5.27390 5.29151 5.33608 5.44916 5.59678 5.79217 5.87201 5.93521 5.96631 5.98901 6.13864 6.18039 6.24247 6.29978 6.36999 6.56737 6.63080 6.70888 6.74187 6.83718 7.00548 7.14465 7.20759 7.36071 7.79594 8.02793 8.06646 8.43896 8.81669 9.02513 9.58142 11.03749 Molecular weight = 266.18amu Principal moments of inertia in cm(-1) A = 0.017192 B = 0.007258 C = 0.005898 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1628.283005 B = 3856.664779 C = 4746.202229 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.080 3.920 2 N -0.294 5.294 3 N -0.105 5.105 4 N -0.276 5.276 5 C -0.039 4.039 6 C 0.015 3.985 7 C 0.129 3.871 8 N -0.522 5.522 9 C 0.174 3.826 10 C -0.497 4.497 11 H 0.064 0.936 12 C 0.056 3.944 13 N -0.900 5.900 14 Si 0.892 3.108 15 H -0.281 1.281 16 H -0.289 1.289 17 H -0.273 1.273 18 C 0.055 3.945 19 C -0.057 4.057 20 C -0.123 4.123 21 C -0.139 4.139 22 C -0.153 4.153 23 H 0.092 0.908 24 H 0.095 0.905 25 H 0.097 0.903 26 H 0.188 0.812 27 H 0.106 0.894 28 H 0.034 0.966 29 H 0.056 0.944 30 H -0.006 1.006 31 H 0.261 0.739 32 H 0.054 0.946 33 H 0.028 0.972 34 H 0.032 0.968 35 H 0.035 0.965 36 H 0.084 0.916 37 H 0.048 0.952 38 H 0.052 0.948 39 H 0.044 0.956 40 H 0.103 0.897 41 H 0.037 0.963 42 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.911 9.133 -1.877 11.606 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.089 5.089 3 N -0.084 5.084 4 N -0.141 5.141 5 C -0.197 4.197 6 C -0.118 4.118 7 C -0.002 4.002 8 N -0.247 5.247 9 C 0.050 3.950 10 C -0.536 4.536 11 H 0.082 0.918 12 C -0.145 4.145 13 N -0.540 5.540 14 Si 0.721 3.279 15 H -0.208 1.208 16 H -0.215 1.215 17 H -0.198 1.198 18 C -0.073 4.073 19 C -0.057 4.057 20 C -0.180 4.180 21 C -0.197 4.197 22 C -0.209 4.209 23 H 0.110 0.890 24 H 0.114 0.886 25 H 0.115 0.885 26 H 0.205 0.795 27 H 0.124 0.876 28 H 0.052 0.948 29 H 0.073 0.927 30 H 0.011 0.989 31 H 0.070 0.930 32 H 0.072 0.928 33 H 0.046 0.954 34 H 0.051 0.949 35 H 0.054 0.946 36 H 0.103 0.897 37 H 0.067 0.933 38 H 0.071 0.929 39 H 0.063 0.937 40 H 0.122 0.878 41 H 0.056 0.944 42 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -6.550 10.674 -1.580 12.623 hybrid contribution -0.044 -1.930 -0.090 1.932 sum -6.594 8.744 -1.670 11.079 Atomic orbital electron populations 1.22259 0.73968 1.05198 1.04719 1.47079 1.08745 1.04957 1.48072 1.78189 0.96767 1.11952 1.21461 1.75004 1.09495 1.12923 1.16725 1.23306 0.97505 0.91347 1.07510 1.22437 0.91182 0.91682 1.06493 1.20572 1.00312 0.86924 0.92353 1.62107 1.31714 1.15335 1.15499 1.20301 0.99061 0.78891 0.96730 1.21162 0.95579 0.92617 1.44219 0.91760 1.24957 0.96934 0.96700 0.95900 1.69936 1.31996 1.02355 1.49684 0.86580 0.84768 0.77671 0.78918 1.20761 1.21504 1.19791 1.22422 0.91313 0.98275 0.95294 1.20410 0.94992 0.96108 0.94204 1.21651 0.98521 0.99177 0.98692 1.21894 0.98043 0.99082 1.00705 1.22230 1.04384 0.95509 0.98816 0.88974 0.88614 0.88481 0.79490 0.87574 0.94831 0.92652 0.98861 0.92985 0.92752 0.95370 0.94853 0.94611 0.89669 0.93268 0.92881 0.93688 0.87834 0.94433 0.93892 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.79 9.36 59.85 0.56 1.35 16 2 N -0.29 -4.28 3.65 -63.79 -0.23 -4.52 16 3 N -0.10 -1.78 13.17 60.35 0.79 -0.98 16 4 N -0.28 -4.99 12.41 30.23 0.38 -4.61 16 5 C -0.04 -0.66 11.99 -17.74 -0.21 -0.87 16 6 C 0.01 0.23 6.12 -82.09 -0.50 -0.27 16 7 C 0.13 2.08 4.97 -4.98 -0.02 2.06 16 8 N -0.52 -9.59 2.92 -237.52 -0.69 -10.28 16 9 C 0.17 3.93 3.87 -4.98 -0.02 3.91 16 10 C -0.50 -12.57 8.74 -34.44 -0.30 -12.88 16 11 H 0.06 1.65 7.81 -52.48 -0.41 1.24 16 12 C 0.06 1.48 5.46 -17.82 -0.10 1.38 16 13 N -0.90 -24.86 13.28 55.43 0.74 -24.13 16 14 Si 0.89 20.73 29.54 -169.99 -5.02 15.71 16 15 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 16 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 17 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 18 C 0.06 0.88 4.00 -3.82 -0.02 0.86 16 19 C -0.06 -0.91 0.86 -154.51 -0.13 -1.04 16 20 C -0.12 -2.12 8.17 37.16 0.30 -1.81 16 21 C -0.14 -1.83 8.44 37.16 0.31 -1.52 16 22 C -0.15 -2.76 6.96 37.16 0.26 -2.50 16 23 H 0.09 0.84 7.03 -51.93 -0.37 0.48 16 24 H 0.10 0.74 8.14 -51.93 -0.42 0.31 16 25 H 0.10 0.84 6.78 -51.93 -0.35 0.48 16 26 H 0.19 2.84 8.06 -52.49 -0.42 2.41 16 27 H 0.11 1.81 7.91 -51.93 -0.41 1.40 16 28 H 0.03 0.48 6.99 -51.93 -0.36 0.12 16 29 H 0.06 1.32 4.30 -51.93 -0.22 1.09 16 30 H -0.01 -0.16 7.68 -51.93 -0.40 -0.56 16 31 H 0.26 6.93 8.31 -40.82 -0.34 6.59 16 32 H 0.05 0.75 3.27 -51.93 -0.17 0.58 16 33 H 0.03 0.45 7.80 -51.92 -0.40 0.05 16 34 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.08 1.71 7.34 -51.93 -0.38 1.33 16 37 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 38 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 39 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 40 H 0.10 2.27 5.23 -51.93 -0.27 2.00 16 41 H 0.04 0.62 8.13 -51.93 -0.42 0.20 16 42 H 0.04 0.76 7.79 -51.93 -0.40 0.36 16 LS Contribution 328.49 15.07 4.95 4.95 Total: -1.00 -28.99 328.49 -5.63 -34.62 By element: Atomic # 1 Polarization: 7.24 SS G_CDS: -6.67 Total: 0.57 kcal Atomic # 6 Polarization: -11.46 SS G_CDS: 0.13 Total: -11.33 kcal Atomic # 7 Polarization: -45.50 SS G_CDS: 0.98 Total: -44.52 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -5.02 Total: 15.71 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -28.99 -5.63 -34.62 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000093101103.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.201 kcal (2) G-P(sol) polarization free energy of solvation -28.985 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 110.216 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.633 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.618 kcal (6) G-S(sol) free energy of system = (1) + (5) 104.583 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds