Wall clock time and date at job start Mon Mar 30 2020 00:32:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.35494 * 126.97567 * 2 1 4 4 N 1.30523 * 107.30084 * 179.83598 * 3 2 1 5 5 N 1.28596 * 109.67497 * 0.44283 * 4 3 2 6 6 C 1.30516 * 109.67103 * 359.71789 * 5 4 3 7 7 C 1.50697 * 126.34519 * 180.02562 * 6 5 4 8 8 N 1.46901 * 109.47188 * 269.96009 * 7 6 5 9 9 C 1.46899 * 111.00232 * 188.82923 * 8 7 6 10 10 C 1.50703 * 109.47435 * 189.26740 * 9 8 7 11 11 H 1.08001 * 119.99342 * 4.79629 * 10 9 8 12 12 C 1.37869 * 120.00251 * 184.79470 * 10 9 8 13 13 N 1.31519 * 120.00432 * 179.97438 * 12 10 9 14 14 Si 1.86805 * 119.99874 * 359.97438 * 12 10 9 15 15 H 1.48500 * 109.46871 * 90.00159 * 14 12 10 16 16 H 1.48504 * 109.46906 * 209.99537 * 14 12 10 17 17 H 1.48494 * 109.47060 * 330.00060 * 14 12 10 18 18 C 1.46905 * 111.00184 * 64.87159 * 8 7 6 19 19 C 1.53005 * 109.46593 * 51.52728 * 18 8 7 20 20 C 1.52995 * 109.47297 * 35.51386 * 19 18 8 21 21 C 1.53001 * 109.46945 * 155.51696 * 19 18 8 22 22 C 1.52996 * 109.46849 * 275.51122 * 19 18 8 23 23 H 1.09005 * 109.47269 * 269.68169 * 1 2 3 24 24 H 1.08999 * 109.47363 * 149.68015 * 1 2 3 25 25 H 1.08997 * 109.47671 * 29.68212 * 1 2 3 26 26 H 1.07999 * 126.35074 * 359.97438 * 3 2 1 27 27 H 1.09000 * 109.47281 * 29.95655 * 7 6 5 28 28 H 1.08997 * 109.47692 * 149.96035 * 7 6 5 29 29 H 1.09002 * 109.47008 * 309.26308 * 9 8 7 30 30 H 1.08998 * 109.47161 * 69.26607 * 9 8 7 31 31 H 0.96992 * 120.00567 * 180.02562 * 13 12 10 32 32 H 1.08999 * 109.46845 * 171.52159 * 18 8 7 33 33 H 1.09000 * 109.47028 * 291.52820 * 18 8 7 34 34 H 1.08994 * 109.47514 * 58.91303 * 20 19 18 35 35 H 1.09005 * 109.46724 * 178.91761 * 20 19 18 36 36 H 1.09003 * 109.47107 * 298.91286 * 20 19 18 37 37 H 1.08994 * 109.47089 * 59.99329 * 21 19 18 38 38 H 1.08999 * 109.47340 * 179.97438 * 21 19 18 39 39 H 1.09005 * 109.46537 * 299.99721 * 21 19 18 40 40 H 1.09003 * 109.47463 * 78.16471 * 22 19 18 41 41 H 1.09003 * 109.47416 * 198.16526 * 22 19 18 42 42 H 1.09001 * 109.47393 * 318.16222 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2800 1.0824 0.0000 4 7 3.5090 0.6430 0.0036 5 7 3.5090 -0.6429 -0.0036 6 6 2.2800 -1.0823 -0.0060 7 6 1.8477 -2.5259 -0.0134 8 7 1.7064 -2.9876 -1.4008 9 6 1.0878 -4.3190 -1.4522 10 6 1.1656 -4.8552 -2.8585 11 1 1.6960 -4.3012 -3.6190 12 6 0.5599 -6.0528 -3.1742 13 7 0.6273 -6.5205 -4.4016 14 14 -0.3567 -7.0112 -1.8586 15 1 -1.7785 -6.5833 -1.8347 16 1 -0.2819 -8.4631 -2.1613 17 1 0.2615 -6.7491 -0.5341 18 6 3.0027 -2.9823 -2.0921 19 6 4.0321 -3.7400 -1.2511 20 6 3.3503 -4.9149 -0.5472 21 6 5.1452 -4.2659 -2.1596 22 6 4.6303 -2.7966 -0.2056 23 1 -0.3634 -0.0057 1.0277 24 1 -0.3634 -0.8871 -0.5188 25 1 -0.3634 0.8928 -0.5089 26 1 1.9701 2.1170 -0.0004 27 1 2.5963 -3.1321 0.4967 28 1 0.8912 -2.6215 0.5004 29 1 1.6169 -4.9917 -0.7772 30 1 0.0436 -4.2465 -1.1483 31 1 0.2009 -7.3628 -4.6238 32 1 2.8988 -3.4672 -3.0627 33 1 3.3349 -1.9538 -2.2332 34 1 2.9075 -5.5769 -1.2912 35 1 4.0876 -5.4660 0.0367 36 1 2.5702 -4.5388 0.1147 37 1 5.6308 -3.4289 -2.6610 38 1 5.8788 -4.8053 -1.5604 39 1 4.7189 -4.9380 -2.9044 40 1 3.9285 -2.6770 0.6199 41 1 5.5643 -3.2150 0.1693 42 1 4.8242 -1.8255 -0.6611 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000111250162.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:32:13 Heat of formation + Delta-G solvation = 159.762547 kcal Electronic energy + Delta-G solvation = -22198.080739 eV Core-core repulsion = 19218.316296 eV Total energy + Delta-G solvation = -2979.764443 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.180 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -42.92377 -39.43229 -34.95340 -33.72731 -32.70833 -31.20032 -28.31512 -27.75680 -27.42492 -26.30174 -25.89254 -23.81027 -22.08779 -20.80837 -19.94263 -18.38265 -17.05127 -16.85919 -16.24366 -15.56903 -14.96345 -14.56386 -14.52822 -13.88814 -13.84274 -13.31616 -13.13802 -12.94521 -12.74923 -12.46598 -12.02527 -11.63764 -11.39091 -11.16679 -11.01938 -10.90484 -10.67910 -10.65723 -10.50048 -10.30866 -10.04443 -9.95009 -9.82458 -9.62006 -9.31422 -8.97939 -8.90240 -8.60490 -7.14682 -6.09481 -4.06753 2.01577 2.68779 3.11201 3.23315 3.31874 3.32465 4.36442 4.53170 4.71050 4.72045 4.93292 5.04203 5.20210 5.26815 5.39038 5.51643 5.58828 5.59520 5.73764 5.87061 6.13127 6.16691 6.24591 6.27097 6.35392 6.40746 6.45368 6.55434 6.61299 6.79008 6.80803 6.92565 7.00283 7.04842 7.11050 7.16208 7.32326 7.50308 7.85853 8.00837 8.59188 8.97113 8.98242 9.50768 11.02473 Molecular weight = 266.18amu Principal moments of inertia in cm(-1) A = 0.021318 B = 0.007191 C = 0.006031 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1313.106048 B = 3892.825888 C = 4641.361042 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.072 3.928 2 N -0.469 5.469 3 C 0.134 3.866 4 N -0.308 5.308 5 N -0.285 5.285 6 C 0.205 3.795 7 C 0.098 3.902 8 N -0.519 5.519 9 C 0.117 3.883 10 C -0.510 4.510 11 H 0.085 0.915 12 C 0.071 3.929 13 N -0.898 5.898 14 Si 0.871 3.129 15 H -0.278 1.278 16 H -0.287 1.287 17 H -0.266 1.266 18 C 0.066 3.934 19 C -0.094 4.094 20 C -0.166 4.166 21 C -0.132 4.132 22 C -0.148 4.148 23 H 0.076 0.924 24 H 0.101 0.899 25 H 0.088 0.912 26 H 0.211 0.789 27 H 0.100 0.900 28 H 0.076 0.924 29 H 0.043 0.957 30 H 0.016 0.984 31 H 0.264 0.736 32 H 0.100 0.900 33 H 0.053 0.947 34 H 0.091 0.909 35 H 0.034 0.966 36 H 0.064 0.936 37 H 0.047 0.953 38 H 0.043 0.957 39 H 0.060 0.940 40 H 0.057 0.943 41 H 0.029 0.971 42 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.088 10.161 10.233 14.421 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 N -0.160 5.160 3 C -0.154 4.154 4 N -0.148 5.148 5 N -0.126 5.126 6 C -0.063 4.063 7 C -0.032 4.032 8 N -0.243 5.243 9 C -0.008 4.008 10 C -0.547 4.547 11 H 0.102 0.898 12 C -0.130 4.130 13 N -0.537 5.537 14 Si 0.698 3.302 15 H -0.204 1.204 16 H -0.213 1.213 17 H -0.191 1.191 18 C -0.061 4.061 19 C -0.095 4.095 20 C -0.222 4.222 21 C -0.190 4.190 22 C -0.205 4.205 23 H 0.095 0.905 24 H 0.119 0.881 25 H 0.107 0.893 26 H 0.227 0.773 27 H 0.117 0.883 28 H 0.095 0.905 29 H 0.060 0.940 30 H 0.034 0.966 31 H 0.074 0.926 32 H 0.118 0.882 33 H 0.071 0.929 34 H 0.110 0.890 35 H 0.053 0.947 36 H 0.082 0.918 37 H 0.066 0.934 38 H 0.062 0.938 39 H 0.079 0.921 40 H 0.075 0.925 41 H 0.049 0.951 42 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 1.174 10.355 9.878 14.359 hybrid contribution -1.683 -0.947 0.929 2.143 sum -0.509 9.408 10.808 14.338 Atomic orbital electron populations 1.22107 0.75575 1.05857 1.03557 1.46161 1.09173 1.06739 1.53898 1.26246 0.87630 0.94697 1.06818 1.74240 1.18147 1.04448 1.17935 1.74770 1.16294 1.01973 1.19585 1.25000 0.86944 0.92312 1.02005 1.21230 1.01604 0.85479 0.94844 1.62245 1.23085 1.29287 1.09699 1.21292 0.94105 0.85532 0.99884 1.21102 1.34432 1.05353 0.93859 0.89763 1.24873 0.95886 0.97265 0.95022 1.69882 1.44708 1.20856 1.18264 0.86931 0.80793 0.79537 0.82903 1.20352 1.21323 1.19070 1.22404 0.86116 0.98503 0.99119 1.21144 0.96409 0.95634 0.96349 1.22884 0.99199 0.98935 1.01150 1.21780 0.97552 1.00350 0.99332 1.22809 0.98904 1.00191 0.98627 0.90497 0.88064 0.89344 0.77256 0.88324 0.90524 0.93987 0.96638 0.92645 0.88224 0.92874 0.89044 0.94716 0.91775 0.93433 0.93784 0.92120 0.92452 0.95143 0.89198 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.64 10.89 59.85 0.65 1.30 16 2 N -0.47 -6.09 3.15 -122.69 -0.39 -6.48 16 3 C 0.13 1.70 12.74 -89.94 -1.15 0.55 16 4 N -0.31 -5.11 12.21 29.69 0.36 -4.75 16 5 N -0.29 -4.98 6.94 32.79 0.23 -4.76 16 6 C 0.20 3.27 6.24 -155.00 -0.97 2.31 16 7 C 0.10 1.60 4.07 -4.98 -0.02 1.58 16 8 N -0.52 -10.11 4.85 -237.51 -1.15 -11.26 16 9 C 0.12 2.56 3.25 -4.97 -0.02 2.55 16 10 C -0.51 -13.33 8.07 -34.44 -0.28 -13.61 16 11 H 0.08 2.42 5.85 -52.49 -0.31 2.12 16 12 C 0.07 1.95 5.47 -17.82 -0.10 1.85 16 13 N -0.90 -26.36 13.96 55.43 0.77 -25.59 16 14 Si 0.87 20.35 27.38 -169.99 -4.65 15.70 16 15 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 16 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 17 H -0.27 -5.86 6.68 56.52 0.38 -5.48 16 18 C 0.07 1.32 4.56 -3.82 -0.02 1.30 16 19 C -0.09 -1.68 0.77 -154.51 -0.12 -1.80 16 20 C -0.17 -3.04 6.20 37.15 0.23 -2.81 16 21 C -0.13 -2.28 8.27 37.16 0.31 -1.97 16 22 C -0.15 -2.51 6.54 37.16 0.24 -2.27 16 23 H 0.08 0.53 8.14 -51.93 -0.42 0.10 16 24 H 0.10 1.05 7.81 -51.93 -0.41 0.65 16 25 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 26 H 0.21 1.66 8.06 -52.49 -0.42 1.23 16 27 H 0.10 1.64 2.52 -51.93 -0.13 1.50 16 28 H 0.08 1.11 7.81 -51.93 -0.41 0.71 16 29 H 0.04 0.92 2.63 -59.86 -0.16 0.76 16 30 H 0.02 0.35 7.31 -51.93 -0.38 -0.03 16 31 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 32 H 0.10 2.26 5.00 -51.93 -0.26 2.00 16 33 H 0.05 1.08 6.68 -51.93 -0.35 0.73 16 34 H 0.09 1.95 5.67 -51.93 -0.29 1.65 16 35 H 0.03 0.58 8.14 -51.93 -0.42 0.15 16 36 H 0.06 1.14 3.34 -51.93 -0.17 0.97 16 37 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 38 H 0.04 0.69 8.13 -51.93 -0.42 0.27 16 39 H 0.06 1.13 8.12 -51.93 -0.42 0.71 16 40 H 0.06 0.96 4.10 -51.93 -0.21 0.75 16 41 H 0.03 0.48 8.01 -51.93 -0.42 0.07 16 42 H 0.09 1.65 5.34 -51.93 -0.28 1.37 16 LS Contribution 303.68 15.07 4.58 4.58 Total: -1.00 -30.95 303.68 -7.36 -38.31 By element: Atomic # 1 Polarization: 11.16 SS G_CDS: -5.88 Total: 5.28 kcal Atomic # 6 Polarization: -9.80 SS G_CDS: -1.23 Total: -11.03 kcal Atomic # 7 Polarization: -52.66 SS G_CDS: -0.17 Total: -52.83 kcal Atomic # 14 Polarization: 20.35 SS G_CDS: -4.65 Total: 15.70 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -30.95 -7.36 -38.31 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000111250162.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 198.072 kcal (2) G-P(sol) polarization free energy of solvation -30.948 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 167.124 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.362 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.310 kcal (6) G-S(sol) free energy of system = (1) + (5) 159.763 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds