Wall clock time and date at job start Mon Mar 30 2020 00:32:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.35494 * 126.97567 * 2 1 4 4 N 1.30523 * 107.30084 * 179.83598 * 3 2 1 5 5 N 1.28596 * 109.67497 * 0.44283 * 4 3 2 6 6 C 1.30516 * 109.67103 * 359.71789 * 5 4 3 7 7 C 1.50697 * 126.34519 * 180.02562 * 6 5 4 8 8 N 1.46901 * 109.47188 * 269.96009 * 7 6 5 9 9 C 1.46899 * 111.00232 * 188.82923 * 8 7 6 10 10 C 1.50703 * 109.47435 * 189.26740 * 9 8 7 11 11 H 1.08001 * 119.99342 * 4.79629 * 10 9 8 12 12 C 1.37869 * 120.00251 * 184.79470 * 10 9 8 13 13 N 1.31519 * 120.00432 * 179.97438 * 12 10 9 14 14 Si 1.86805 * 119.99874 * 359.97438 * 12 10 9 15 15 H 1.48500 * 109.46871 * 90.00159 * 14 12 10 16 16 H 1.48504 * 109.46906 * 209.99537 * 14 12 10 17 17 H 1.48494 * 109.47060 * 330.00060 * 14 12 10 18 18 C 1.46905 * 111.00184 * 64.87159 * 8 7 6 19 19 C 1.53005 * 109.46593 * 51.52728 * 18 8 7 20 20 C 1.52995 * 109.47297 * 35.51386 * 19 18 8 21 21 C 1.53001 * 109.46945 * 155.51696 * 19 18 8 22 22 C 1.52996 * 109.46849 * 275.51122 * 19 18 8 23 23 H 1.09005 * 109.47269 * 269.68169 * 1 2 3 24 24 H 1.08999 * 109.47363 * 149.68015 * 1 2 3 25 25 H 1.08997 * 109.47671 * 29.68212 * 1 2 3 26 26 H 1.07999 * 126.35074 * 359.97438 * 3 2 1 27 27 H 1.09000 * 109.47281 * 29.95655 * 7 6 5 28 28 H 1.08997 * 109.47692 * 149.96035 * 7 6 5 29 29 H 1.09002 * 109.47008 * 309.26308 * 9 8 7 30 30 H 1.08998 * 109.47161 * 69.26607 * 9 8 7 31 31 H 0.96992 * 120.00567 * 180.02562 * 13 12 10 32 32 H 1.08999 * 109.46845 * 171.52159 * 18 8 7 33 33 H 1.09000 * 109.47028 * 291.52820 * 18 8 7 34 34 H 1.08994 * 109.47514 * 58.91303 * 20 19 18 35 35 H 1.09005 * 109.46724 * 178.91761 * 20 19 18 36 36 H 1.09003 * 109.47107 * 298.91286 * 20 19 18 37 37 H 1.08994 * 109.47089 * 59.99329 * 21 19 18 38 38 H 1.08999 * 109.47340 * 179.97438 * 21 19 18 39 39 H 1.09005 * 109.46537 * 299.99721 * 21 19 18 40 40 H 1.09003 * 109.47463 * 78.16471 * 22 19 18 41 41 H 1.09003 * 109.47416 * 198.16526 * 22 19 18 42 42 H 1.09001 * 109.47393 * 318.16222 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2800 1.0824 0.0000 4 7 3.5090 0.6430 0.0036 5 7 3.5090 -0.6429 -0.0036 6 6 2.2800 -1.0823 -0.0060 7 6 1.8477 -2.5259 -0.0134 8 7 1.7064 -2.9876 -1.4008 9 6 1.0878 -4.3190 -1.4522 10 6 1.1656 -4.8552 -2.8585 11 1 1.6960 -4.3012 -3.6190 12 6 0.5599 -6.0528 -3.1742 13 7 0.6273 -6.5205 -4.4016 14 14 -0.3567 -7.0112 -1.8586 15 1 -1.7785 -6.5833 -1.8347 16 1 -0.2819 -8.4631 -2.1613 17 1 0.2615 -6.7491 -0.5341 18 6 3.0027 -2.9823 -2.0921 19 6 4.0321 -3.7400 -1.2511 20 6 3.3503 -4.9149 -0.5472 21 6 5.1452 -4.2659 -2.1596 22 6 4.6303 -2.7966 -0.2056 23 1 -0.3634 -0.0057 1.0277 24 1 -0.3634 -0.8871 -0.5188 25 1 -0.3634 0.8928 -0.5089 26 1 1.9701 2.1170 -0.0004 27 1 2.5963 -3.1321 0.4967 28 1 0.8912 -2.6215 0.5004 29 1 1.6169 -4.9917 -0.7772 30 1 0.0436 -4.2465 -1.1483 31 1 0.2009 -7.3628 -4.6238 32 1 2.8988 -3.4672 -3.0627 33 1 3.3349 -1.9538 -2.2332 34 1 2.9075 -5.5769 -1.2912 35 1 4.0876 -5.4660 0.0367 36 1 2.5702 -4.5388 0.1147 37 1 5.6308 -3.4289 -2.6610 38 1 5.8788 -4.8053 -1.5604 39 1 4.7189 -4.9380 -2.9044 40 1 3.9285 -2.6770 0.6199 41 1 5.5643 -3.2150 0.1693 42 1 4.8242 -1.8255 -0.6611 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000111250162.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:32:12 Heat of formation + Delta-G solvation = 140.133373 kcal Electronic energy + Delta-G solvation = -22198.931924 eV Core-core repulsion = 19218.316296 eV Total energy + Delta-G solvation = -2980.615627 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.180 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -44.01955 -40.95298 -36.00446 -35.31612 -34.48170 -32.65439 -29.95648 -29.13058 -28.36430 -27.74328 -27.39641 -25.44909 -23.13189 -22.35700 -21.29207 -19.89586 -18.93086 -17.87780 -17.43426 -16.89546 -16.62178 -16.07212 -15.75705 -15.50628 -15.23116 -14.65067 -14.40654 -14.25749 -14.14285 -13.72967 -13.26763 -13.06097 -12.94845 -12.80580 -12.65143 -12.37800 -12.31067 -12.17687 -12.00263 -11.79521 -11.60946 -11.43362 -11.21810 -10.94221 -10.90574 -10.67845 -10.54602 -10.10311 -8.70728 -8.19013 -6.20338 0.95701 1.39478 1.41266 1.50909 1.76682 1.98024 2.40330 3.13683 3.29476 3.58373 3.80397 3.97370 4.02157 4.08235 4.09526 4.20754 4.45623 4.48215 4.63812 4.69023 4.77292 4.77976 4.84547 4.92203 4.94099 5.00466 5.08053 5.13406 5.18928 5.21005 5.28850 5.30827 5.48654 5.54097 5.57307 5.65694 5.92261 6.01592 6.11633 6.32935 6.70212 6.85715 7.40740 7.87061 8.96242 Molecular weight = 266.18amu Principal moments of inertia in cm(-1) A = 0.021318 B = 0.007191 C = 0.006031 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1313.106048 B = 3892.825888 C = 4641.361042 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.066 3.934 2 N -0.467 5.467 3 C 0.155 3.845 4 N -0.354 5.354 5 N -0.309 5.309 6 C 0.186 3.814 7 C 0.103 3.897 8 N -0.527 5.527 9 C 0.126 3.874 10 C -0.504 4.504 11 H 0.043 0.957 12 C 0.011 3.989 13 N -0.952 5.952 14 Si 0.937 3.063 15 H -0.270 1.270 16 H -0.292 1.292 17 H -0.239 1.239 18 C 0.079 3.921 19 C -0.090 4.090 20 C -0.161 4.161 21 C -0.129 4.129 22 C -0.133 4.133 23 H 0.103 0.897 24 H 0.084 0.916 25 H 0.116 0.884 26 H 0.258 0.742 27 H 0.100 0.900 28 H 0.099 0.901 29 H 0.056 0.944 30 H 0.023 0.977 31 H 0.263 0.737 32 H 0.060 0.940 33 H 0.045 0.955 34 H 0.059 0.941 35 H 0.054 0.946 36 H 0.074 0.926 37 H 0.051 0.949 38 H 0.063 0.937 39 H 0.035 0.965 40 H 0.062 0.938 41 H 0.041 0.959 42 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.872 11.300 13.209 17.405 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 N -0.157 5.157 3 C -0.134 4.134 4 N -0.193 5.193 5 N -0.150 5.150 6 C -0.083 4.083 7 C -0.026 4.026 8 N -0.251 5.251 9 C 0.000 4.000 10 C -0.542 4.542 11 H 0.061 0.939 12 C -0.186 4.186 13 N -0.593 5.593 14 Si 0.761 3.239 15 H -0.195 1.195 16 H -0.218 1.218 17 H -0.162 1.162 18 C -0.049 4.049 19 C -0.092 4.092 20 C -0.218 4.218 21 C -0.187 4.187 22 C -0.190 4.190 23 H 0.121 0.879 24 H 0.103 0.897 25 H 0.135 0.865 26 H 0.273 0.727 27 H 0.117 0.883 28 H 0.118 0.882 29 H 0.073 0.927 30 H 0.041 0.959 31 H 0.072 0.928 32 H 0.078 0.922 33 H 0.064 0.936 34 H 0.077 0.923 35 H 0.073 0.927 36 H 0.092 0.908 37 H 0.070 0.930 38 H 0.082 0.918 39 H 0.054 0.946 40 H 0.080 0.920 41 H 0.060 0.940 42 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 0.207 11.521 12.876 17.279 hybrid contribution -1.365 -1.140 -0.066 1.779 sum -1.157 10.381 12.810 16.529 Atomic orbital electron populations 1.22411 0.73107 1.06508 1.05502 1.46390 1.10621 1.05903 1.52792 1.27107 0.86524 0.96283 1.03439 1.74163 1.20494 1.04248 1.20402 1.74655 1.17428 1.02772 1.20150 1.24800 0.87330 0.92713 1.03464 1.21177 1.02885 0.85960 0.92538 1.62106 1.22837 1.27903 1.12223 1.21130 0.94829 0.86891 0.97124 1.21323 1.32762 1.04859 0.95239 0.93931 1.25740 0.97142 0.98535 0.97180 1.70054 1.46749 1.21608 1.20910 0.85872 0.79639 0.77410 0.81022 1.19540 1.21804 1.16181 1.22130 0.87221 0.97712 0.97857 1.21100 0.95984 0.95653 0.96453 1.22772 0.99960 0.98491 1.00532 1.21746 0.97748 1.00212 0.99002 1.22634 0.99329 0.99033 0.97994 0.87851 0.89694 0.86512 0.72658 0.88325 0.88247 0.92697 0.95934 0.92818 0.92158 0.93645 0.92258 0.92669 0.90803 0.92973 0.91820 0.94581 0.91982 0.94040 0.90460 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.94 10.89 127.77 1.39 2.33 16 2 N -0.47 -10.77 3.15 -542.08 -1.71 -12.48 16 3 C 0.15 3.45 12.74 180.11 2.30 5.75 16 4 N -0.35 -11.17 12.21 -59.99 -0.73 -11.90 16 5 N -0.31 -10.43 6.94 -50.16 -0.35 -10.78 16 6 C 0.19 5.59 6.24 137.98 0.86 6.45 16 7 C 0.10 3.17 4.07 85.56 0.35 3.52 16 8 N -0.53 -20.28 4.85 -905.35 -4.39 -24.67 16 9 C 0.13 5.42 3.25 85.56 0.28 5.70 16 10 C -0.50 -27.16 8.07 25.60 0.21 -26.95 16 11 H 0.04 2.62 5.85 -2.91 -0.02 2.60 16 12 C 0.01 0.60 5.47 84.65 0.46 1.06 16 13 N -0.95 -58.09 13.96 21.45 0.30 -57.79 16 14 Si 0.94 41.64 27.38 68.60 1.88 43.52 16 15 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 16 H -0.29 -13.13 7.11 99.48 0.71 -12.42 16 17 H -0.24 -9.47 6.68 99.48 0.66 -8.80 16 18 C 0.08 3.21 4.56 86.30 0.39 3.61 16 19 C -0.09 -3.21 0.77 -52.18 -0.04 -3.25 16 20 C -0.16 -5.72 6.20 71.98 0.45 -5.27 16 21 C -0.13 -4.49 8.27 71.98 0.60 -3.90 16 22 C -0.13 -4.32 6.54 71.98 0.47 -3.85 16 23 H 0.10 0.95 8.14 -2.38 -0.02 0.93 16 24 H 0.08 1.54 7.81 -2.39 -0.02 1.52 16 25 H 0.12 1.00 8.14 -2.39 -0.02 0.98 16 26 H 0.26 2.84 8.06 -2.91 -0.02 2.81 16 27 H 0.10 3.04 2.52 -2.39 -0.01 3.03 16 28 H 0.10 2.57 7.81 -2.39 -0.02 2.55 16 29 H 0.06 2.29 2.63 -9.84 -0.03 2.26 16 30 H 0.02 0.96 7.31 -2.39 -0.02 0.94 16 31 H 0.26 15.14 8.31 -92.71 -0.77 14.36 16 32 H 0.06 2.93 5.00 -2.39 -0.01 2.92 16 33 H 0.05 1.90 6.68 -2.39 -0.02 1.88 16 34 H 0.06 2.51 5.67 -2.39 -0.01 2.49 16 35 H 0.05 1.72 8.14 -2.38 -0.02 1.70 16 36 H 0.07 2.46 3.34 -2.39 -0.01 2.46 16 37 H 0.05 1.72 8.14 -2.39 -0.02 1.71 16 38 H 0.06 1.94 8.13 -2.39 -0.02 1.92 16 39 H 0.03 1.40 8.12 -2.38 -0.02 1.38 16 40 H 0.06 1.97 4.10 -2.39 -0.01 1.96 16 41 H 0.04 1.24 8.01 -2.39 -0.02 1.22 16 42 H 0.08 2.79 5.34 -2.39 -0.01 2.77 16 Total: -1.00 -70.35 303.68 3.68 -66.67 By element: Atomic # 1 Polarization: 21.26 SS G_CDS: 0.97 Total: 22.24 kcal Atomic # 6 Polarization: -22.52 SS G_CDS: 7.71 Total: -14.81 kcal Atomic # 7 Polarization: -110.74 SS G_CDS: -6.88 Total: -117.62 kcal Atomic # 14 Polarization: 41.64 SS G_CDS: 1.88 Total: 43.52 kcal Total: -70.35 3.68 -66.67 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000111250162.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 206.805 kcal (2) G-P(sol) polarization free energy of solvation -70.354 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 136.451 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.682 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.672 kcal (6) G-S(sol) free energy of system = (1) + (5) 140.133 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds