Wall clock time and date at job start Mon Mar 30 2020 00:28:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42898 * 113.99667 * 2 1 4 4 C 1.53005 * 109.47076 * 179.97438 * 3 2 1 5 5 C 1.53118 * 109.52373 * 294.87447 * 4 3 2 6 6 C 1.53042 * 109.27662 * 182.49983 * 5 4 3 7 7 N 1.46851 * 109.57168 * 59.08523 * 6 5 4 8 8 C 1.46901 * 110.99719 * 174.19681 * 7 6 5 9 9 C 1.53005 * 109.46878 * 200.05911 * 8 7 6 10 10 H 1.09000 * 109.46744 * 305.21228 * 9 8 7 11 11 C 1.47204 * 109.47362 * 65.21384 * 9 8 7 12 12 N 7.98291 * 135.11170 * 46.44598 * 2 1 3 13 13 C 1.52998 * 109.46867 * 185.21716 * 9 8 7 14 14 C 1.50707 * 109.47108 * 175.00021 * 13 9 8 15 15 H 1.08000 * 119.99454 * 359.97438 * 14 13 9 16 16 C 1.37873 * 120.00422 * 179.97438 * 14 13 9 17 17 N 1.31517 * 119.99763 * 0.02562 * 16 14 13 18 18 Si 1.86799 * 120.00313 * 179.97438 * 16 14 13 19 19 H 1.48503 * 109.46856 * 60.00100 * 18 16 14 20 20 H 1.48502 * 109.47087 * 180.02562 * 18 16 14 21 21 H 1.48501 * 109.47198 * 300.00558 * 18 16 14 22 22 C 1.46845 * 111.19757 * 298.28776 * 7 6 5 23 23 C 1.53038 * 109.52446 * 61.74470 * 22 7 6 24 24 H 1.09002 * 109.46955 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.46807 * 60.00297 * 1 2 3 26 26 H 1.08997 * 109.47216 * 300.00230 * 1 2 3 27 27 H 1.09002 * 109.47445 * 299.99491 * 3 2 1 28 28 H 1.08999 * 109.47613 * 59.99914 * 3 2 1 29 29 H 1.09001 * 109.52028 * 55.00093 * 4 3 2 30 30 H 1.08999 * 109.50077 * 302.38017 * 5 4 3 31 31 H 1.09003 * 109.50163 * 62.49819 * 5 4 3 32 32 H 1.08997 * 109.41094 * 299.06886 * 6 5 4 33 33 H 1.08991 * 109.45707 * 179.12614 * 6 5 4 34 34 H 1.08999 * 109.47015 * 320.05221 * 8 7 6 35 35 H 1.08998 * 109.47610 * 80.05517 * 8 7 6 36 36 H 1.08999 * 109.46884 * 294.99212 * 13 9 8 37 37 H 1.08997 * 109.47878 * 54.99653 * 13 9 8 38 38 H 0.96998 * 119.99803 * 179.97438 * 17 16 14 39 39 H 1.09005 * 109.46523 * 301.72618 * 22 7 6 40 40 H 1.09003 * 109.45599 * 181.75360 * 22 7 6 41 41 H 1.09004 * 109.50624 * 180.87794 * 23 22 7 42 42 H 1.08998 * 109.50170 * 60.76140 * 23 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1847 0.0006 5 6 3.9972 0.5395 1.3102 6 6 5.5262 0.4784 1.3318 7 7 6.0745 1.8354 1.2125 8 6 7.5353 1.8285 1.3676 9 6 8.0156 3.2336 1.7366 10 1 7.6578 3.9465 0.9938 11 6 7.4894 3.5998 3.0617 12 7 7.0848 3.8819 4.0829 13 6 9.5450 3.2570 1.7708 14 6 10.0205 4.6665 2.0129 15 1 9.3034 5.4655 2.1303 16 6 11.3707 4.9359 2.0847 17 7 12.2439 3.9628 1.9413 18 14 11.9601 6.6830 2.3841 19 1 11.4278 7.1692 3.6824 20 1 13.4445 6.7058 2.4174 21 1 11.4763 7.5629 1.2901 22 6 5.6834 2.4562 -0.0595 23 6 4.1591 2.5778 -0.1220 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 0.5138 0.8899 27 1 1.6886 1.8464 -0.8900 28 1 1.6886 1.8464 0.8899 29 1 3.8524 0.5684 -0.8407 30 1 3.6457 1.1348 2.1529 31 1 3.5907 -0.4694 1.3819 32 1 5.8763 -0.1294 0.4975 33 1 5.8586 0.0336 2.2697 34 1 7.8134 1.1305 2.1572 35 1 7.9988 1.5205 0.4304 36 1 9.9004 2.6109 2.5734 37 1 9.9354 2.9007 0.8175 38 1 13.1938 4.1524 1.9914 39 1 6.0328 1.8391 -0.8874 40 1 6.1300 3.4479 -0.1320 41 1 3.8683 3.0243 -1.0729 42 1 3.8103 3.2061 0.6975 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000112560598.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:28:49 Heat of formation + Delta-G solvation = -59.134518 kcal Electronic energy + Delta-G solvation = -20161.956095 eV Core-core repulsion = 17140.406813 eV Total energy + Delta-G solvation = -3021.549283 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.39998 -38.82668 -37.77991 -35.78221 -34.91090 -33.04322 -31.70997 -29.43930 -27.90081 -26.60427 -24.52438 -24.09435 -23.38768 -22.44417 -20.59589 -18.53223 -18.15545 -17.22902 -17.03735 -16.70778 -16.48530 -15.88681 -15.70671 -15.59150 -14.93383 -14.66594 -14.34527 -14.27965 -14.19097 -13.74801 -13.41696 -13.30564 -13.13455 -12.99602 -12.79399 -12.63429 -12.45056 -12.38147 -12.24492 -12.06481 -11.88877 -11.56157 -11.43005 -11.35972 -11.14636 -10.96426 -10.55674 -10.53913 -9.17091 -8.18403 -6.26702 1.41568 1.43369 1.50427 2.10027 2.17803 2.42313 2.86610 2.97165 3.16967 3.38527 3.81014 3.87375 4.04333 4.16822 4.35341 4.38880 4.41866 4.49651 4.51886 4.56728 4.59943 4.65273 4.74311 4.76901 4.81796 4.87202 4.90803 4.94619 5.02612 5.07739 5.12877 5.26191 5.29286 5.47832 5.51120 5.63307 5.80362 6.12056 6.24787 6.28154 6.28946 6.84398 6.95706 7.41748 8.92366 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.041750 B = 0.003366 C = 0.003349 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 670.492108 B = 8316.963429 C = 8358.551467 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.413 6.413 3 C 0.068 3.932 4 C -0.082 4.082 5 C -0.100 4.100 6 C 0.058 3.942 7 N -0.555 5.555 8 C 0.072 3.928 9 C 0.024 3.976 10 H 0.115 0.885 11 C 0.269 3.731 12 N -0.517 5.517 13 C 0.038 3.962 14 C -0.539 4.539 15 H 0.054 0.946 16 C 0.011 3.989 17 N -0.924 5.924 18 Si 0.948 3.052 19 H -0.282 1.282 20 H -0.282 1.282 21 H -0.262 1.262 22 C 0.051 3.949 23 C -0.104 4.104 24 H 0.094 0.906 25 H 0.050 0.950 26 H 0.044 0.956 27 H 0.061 0.939 28 H 0.048 0.952 29 H 0.076 0.924 30 H 0.054 0.946 31 H 0.073 0.927 32 H 0.043 0.957 33 H 0.067 0.933 34 H 0.073 0.927 35 H 0.071 0.929 36 H 0.000 1.000 37 H 0.035 0.965 38 H 0.264 0.736 39 H 0.046 0.954 40 H 0.079 0.921 41 H 0.087 0.913 42 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.007 -7.747 -9.125 23.314 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.333 6.333 3 C -0.009 4.009 4 C -0.101 4.101 5 C -0.138 4.138 6 C -0.070 4.070 7 N -0.280 5.280 8 C -0.057 4.057 9 C 0.002 3.998 10 H 0.133 0.867 11 C -0.047 4.047 12 N -0.194 5.194 13 C 0.000 4.000 14 C -0.577 4.577 15 H 0.072 0.928 16 C -0.188 4.188 17 N -0.564 5.564 18 Si 0.774 3.226 19 H -0.207 1.207 20 H -0.207 1.207 21 H -0.187 1.187 22 C -0.077 4.077 23 C -0.142 4.142 24 H 0.113 0.887 25 H 0.069 0.931 26 H 0.063 0.937 27 H 0.079 0.921 28 H 0.066 0.934 29 H 0.095 0.905 30 H 0.073 0.927 31 H 0.091 0.909 32 H 0.061 0.939 33 H 0.086 0.914 34 H 0.091 0.909 35 H 0.089 0.911 36 H 0.018 0.982 37 H 0.053 0.947 38 H 0.073 0.927 39 H 0.064 0.936 40 H 0.097 0.903 41 H 0.106 0.894 42 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -20.535 -7.248 -7.218 22.941 hybrid contribution 1.026 0.543 -0.464 1.250 sum -19.509 -6.705 -7.682 22.013 Atomic orbital electron populations 1.22889 0.79882 1.03621 1.00632 1.87837 1.21080 1.28798 1.95553 1.22605 0.93321 0.84298 1.00646 1.21154 0.93072 0.97358 0.98496 1.21502 0.93991 1.01066 0.97265 1.22086 0.95456 0.88459 1.00973 1.61876 1.09977 1.20791 1.35383 1.22034 0.87359 0.94426 1.01845 1.19164 0.96528 0.98404 0.85724 0.86702 1.29268 0.89974 0.90830 0.94659 1.80886 1.13266 1.11479 1.13800 1.18987 0.87688 0.95891 0.97484 1.21526 0.91998 0.95003 1.49198 0.92819 1.25715 0.97307 1.00673 0.95069 1.70027 1.02025 1.33393 1.50928 0.85755 0.77196 0.80872 0.78796 1.20737 1.20716 1.18665 1.22204 0.96173 1.00031 0.89282 1.21531 0.94011 0.95848 1.02779 0.88721 0.93145 0.93698 0.92069 0.93385 0.90521 0.92737 0.90879 0.93920 0.91400 0.90877 0.91085 0.98163 0.94677 0.92707 0.93578 0.90282 0.89418 0.91992 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.33 11.01 113.37 1.25 1.58 16 2 O -0.41 -7.86 10.29 -148.98 -1.53 -9.40 16 3 C 0.07 1.14 5.32 71.98 0.38 1.52 16 4 C -0.08 -1.50 2.49 -10.71 -0.03 -1.52 16 5 C -0.10 -2.11 5.25 30.65 0.16 -1.94 16 6 C 0.06 1.31 5.42 86.33 0.47 1.78 16 7 N -0.56 -14.37 4.29 -896.34 -3.85 -18.22 16 8 C 0.07 2.10 4.37 86.30 0.38 2.48 16 9 C 0.02 0.87 2.27 -12.60 -0.03 0.84 16 10 H 0.12 3.86 6.70 -2.39 -0.02 3.84 16 11 C 0.27 11.33 13.67 89.47 1.22 12.55 16 12 N -0.52 -23.80 18.52 19.98 0.37 -23.43 16 13 C 0.04 1.78 4.42 29.85 0.13 1.91 16 14 C -0.54 -28.74 8.60 25.60 0.22 -28.52 16 15 H 0.05 2.83 7.59 -2.91 -0.02 2.81 16 16 C 0.01 0.62 5.46 84.65 0.46 1.08 16 17 N -0.92 -53.29 13.29 21.45 0.28 -53.00 16 18 Si 0.95 43.56 29.54 68.60 2.03 45.58 16 19 H -0.28 -13.07 7.11 99.48 0.71 -12.36 16 20 H -0.28 -12.64 7.11 99.48 0.71 -11.94 16 21 H -0.26 -11.40 7.11 99.48 0.71 -10.69 16 22 C 0.05 1.09 5.29 86.33 0.46 1.55 16 23 C -0.10 -1.90 5.38 30.65 0.16 -1.73 16 24 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16 25 H 0.05 0.52 8.14 -2.39 -0.02 0.50 16 26 H 0.04 0.52 8.14 -2.39 -0.02 0.50 16 27 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 28 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 29 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 30 H 0.05 1.29 8.14 -2.39 -0.02 1.27 16 31 H 0.07 1.50 7.90 -2.39 -0.02 1.48 16 32 H 0.04 0.89 8.14 -2.39 -0.02 0.87 16 33 H 0.07 1.61 7.93 -2.39 -0.02 1.59 16 34 H 0.07 2.19 7.79 -2.39 -0.02 2.17 16 35 H 0.07 1.86 8.00 -2.39 -0.02 1.84 16 36 H 0.00 0.00 8.14 -2.39 -0.02 -0.02 16 37 H 0.03 1.64 8.14 -2.39 -0.02 1.62 16 38 H 0.26 14.49 8.31 -92.71 -0.77 13.72 16 39 H 0.05 0.91 8.14 -2.38 -0.02 0.89 16 40 H 0.08 1.77 6.65 -2.39 -0.02 1.75 16 41 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 42 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 Total: -1.00 -64.13 342.92 3.51 -60.62 By element: Atomic # 1 Polarization: 5.30 SS G_CDS: 0.97 Total: 6.27 kcal Atomic # 6 Polarization: -13.67 SS G_CDS: 5.24 Total: -8.43 kcal Atomic # 7 Polarization: -91.46 SS G_CDS: -3.19 Total: -94.65 kcal Atomic # 8 Polarization: -7.86 SS G_CDS: -1.53 Total: -9.40 kcal Atomic # 14 Polarization: 43.56 SS G_CDS: 2.03 Total: 45.58 kcal Total: -64.13 3.51 -60.62 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000112560598.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.489 kcal (2) G-P(sol) polarization free energy of solvation -64.134 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.645 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.510 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.624 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.135 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds