Wall clock time and date at job start Mon Mar 30 2020 00:28:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42894 * 114.00127 * 2 1 4 4 C 1.52998 * 109.47426 * 179.97438 * 3 2 1 5 5 H 1.09000 * 109.50028 * 55.07719 * 4 3 2 6 6 C 1.53117 * 109.50437 * 294.99789 * 4 3 2 7 7 C 1.53114 * 109.16134 * 182.36300 * 6 4 3 8 8 C 1.53039 * 109.27949 * 57.65713 * 7 6 4 9 9 N 1.46849 * 109.51944 * 300.81919 * 8 7 6 10 10 C 1.46903 * 110.99847 * 185.84092 * 9 8 7 11 11 C 1.53005 * 109.46925 * 163.93228 * 10 9 8 12 12 H 1.09003 * 109.46946 * 54.93906 * 11 10 9 13 13 C 1.47199 * 109.46909 * 294.93230 * 11 10 9 14 14 N 7.22615 * 145.10379 * 306.31762 * 2 1 3 15 15 C 1.53002 * 109.46481 * 174.93601 * 11 10 9 16 16 C 1.50708 * 109.46688 * 185.00197 * 15 11 10 17 17 H 1.08003 * 119.99939 * 359.97438 * 16 15 11 18 18 C 1.37871 * 120.00007 * 180.02562 * 16 15 11 19 19 N 1.31520 * 120.00257 * 359.97438 * 18 16 15 20 20 Si 1.86796 * 120.00334 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.47163 * 59.99331 * 20 18 16 22 22 H 1.48499 * 109.47656 * 179.97438 * 20 18 16 23 23 H 1.48506 * 109.46801 * 299.99833 * 20 18 16 24 24 C 1.46842 * 111.19952 * 61.74337 * 9 8 7 25 25 H 1.08994 * 109.47159 * 300.00250 * 1 2 3 26 26 H 1.09000 * 109.46744 * 60.00684 * 1 2 3 27 27 H 1.09000 * 109.47085 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47557 * 59.99258 * 3 2 1 29 29 H 1.09009 * 109.46975 * 299.99739 * 3 2 1 30 30 H 1.09001 * 109.52200 * 62.45727 * 6 4 3 31 31 H 1.08999 * 109.57622 * 302.29927 * 6 4 3 32 32 H 1.09002 * 109.50486 * 297.71283 * 7 6 4 33 33 H 1.09001 * 109.50489 * 177.59462 * 7 6 4 34 34 H 1.08998 * 109.46137 * 180.80836 * 8 7 6 35 35 H 1.08995 * 109.46004 * 60.83436 * 8 7 6 36 36 H 1.08999 * 109.47297 * 43.92966 * 10 9 8 37 37 H 1.08998 * 109.47179 * 283.93146 * 10 9 8 38 38 H 1.09000 * 109.47353 * 304.99433 * 15 11 10 39 39 H 1.08992 * 109.47334 * 65.00108 * 15 11 10 40 40 H 0.96997 * 120.00203 * 180.02562 * 19 18 16 41 41 H 1.08997 * 109.46394 * 58.26953 * 24 9 8 42 42 H 1.08995 * 109.46682 * 178.24200 * 24 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 1 3.8521 0.5694 -0.8416 6 6 3.9964 0.5365 1.3090 7 6 5.5261 0.4733 1.3269 8 6 6.0921 1.8862 1.1672 9 7 5.6230 2.4624 -0.0994 10 6 6.2565 3.7634 -0.3525 11 6 6.0703 4.1439 -1.8227 12 1 5.0096 4.1200 -2.0727 13 6 6.7966 3.1866 -2.6730 14 7 7.3558 2.4484 -3.3310 15 6 6.6182 5.5529 -2.0581 16 6 6.3250 5.9757 -3.4746 17 1 5.8007 5.3062 -4.1405 18 6 6.7270 7.2167 -3.9209 19 7 7.3659 8.0319 -3.1102 20 14 6.3642 7.7406 -5.6768 21 1 4.8963 7.7367 -5.9013 22 1 6.8959 9.1082 -5.9053 23 1 7.0116 6.7933 -6.6196 24 6 4.1592 2.5769 -0.1207 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5137 -0.8901 27 1 -0.3633 -1.0277 0.0005 28 1 1.6886 1.8464 0.8899 29 1 1.6886 1.8463 -0.8901 30 1 3.5893 -0.4722 1.3791 31 1 3.6465 1.1300 2.1537 32 1 5.8742 -0.1532 0.5056 33 1 5.8619 0.0518 2.2744 34 1 7.1813 1.8430 1.1652 35 1 5.7550 2.5083 1.9963 36 1 7.3207 3.6996 -0.1256 37 1 5.7950 4.5215 0.2802 38 1 6.1430 6.2479 -1.3658 39 1 7.6957 5.5559 -1.8937 40 1 7.6483 8.9051 -3.4241 41 1 3.8310 3.1958 0.7144 42 1 3.8443 3.0354 -1.0581 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000113509151.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:28:56 Heat of formation + Delta-G solvation = -58.790435 kcal Electronic energy + Delta-G solvation = -20370.647677 eV Core-core repulsion = 17349.113315 eV Total energy + Delta-G solvation = -3021.534362 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.45576 -38.76007 -37.77732 -35.74268 -34.80551 -33.10569 -32.25686 -28.64631 -28.04741 -26.10275 -25.78009 -23.86341 -23.04856 -22.44272 -20.60726 -18.53126 -18.20414 -17.25207 -17.01089 -16.71370 -16.47902 -15.83715 -15.69372 -15.56139 -14.93850 -14.68992 -14.51838 -14.22665 -14.17836 -13.74087 -13.58096 -13.28465 -13.05581 -12.96412 -12.79122 -12.61998 -12.48722 -12.41215 -12.33302 -11.92837 -11.85400 -11.53404 -11.47037 -11.34748 -11.17036 -10.94267 -10.54520 -10.53563 -9.18183 -8.18686 -6.26894 1.41269 1.43227 1.50146 2.07863 2.15696 2.42013 2.67848 3.15422 3.17181 3.37122 3.81082 3.90604 4.00925 4.20825 4.30844 4.35709 4.46263 4.49029 4.51698 4.54261 4.61346 4.64536 4.67816 4.74446 4.83199 4.88518 4.89066 4.97481 4.99860 5.05710 5.16840 5.23355 5.40472 5.47366 5.51663 5.62932 5.79944 6.11165 6.21314 6.25415 6.31997 6.83881 6.94800 7.41627 8.92020 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.020791 B = 0.004251 C = 0.003847 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1346.401623 B = 6585.711019 C = 7275.929671 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.413 6.413 3 C 0.068 3.932 4 C -0.080 4.080 5 H 0.061 0.939 6 C -0.104 4.104 7 C -0.113 4.113 8 C 0.056 3.944 9 N -0.556 5.556 10 C 0.074 3.926 11 C 0.022 3.978 12 H 0.114 0.886 13 C 0.268 3.732 14 N -0.517 5.517 15 C 0.039 3.961 16 C -0.540 4.540 17 H 0.052 0.948 18 C 0.013 3.987 19 N -0.923 5.923 20 Si 0.947 3.053 21 H -0.263 1.263 22 H -0.281 1.281 23 H -0.282 1.282 24 C 0.060 3.940 25 H 0.052 0.948 26 H 0.045 0.955 27 H 0.094 0.906 28 H 0.063 0.937 29 H 0.052 0.948 30 H 0.065 0.935 31 H 0.069 0.931 32 H 0.052 0.948 33 H 0.084 0.916 34 H 0.071 0.929 35 H 0.048 0.952 36 H 0.077 0.923 37 H 0.073 0.927 38 H 0.036 0.964 39 H 0.001 0.999 40 H 0.264 0.736 41 H 0.053 0.947 42 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.457 -11.771 13.140 21.596 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.332 6.332 3 C -0.009 4.009 4 C -0.099 4.099 5 H 0.080 0.920 6 C -0.141 4.141 7 C -0.151 4.151 8 C -0.072 4.072 9 N -0.281 5.281 10 C -0.055 4.055 11 C 0.000 4.000 12 H 0.132 0.868 13 C -0.048 4.048 14 N -0.194 5.194 15 C 0.000 4.000 16 C -0.578 4.578 17 H 0.071 0.929 18 C -0.186 4.186 19 N -0.563 5.563 20 Si 0.772 3.228 21 H -0.187 1.187 22 H -0.207 1.207 23 H -0.208 1.208 24 C -0.068 4.068 25 H 0.070 0.930 26 H 0.063 0.937 27 H 0.113 0.887 28 H 0.082 0.918 29 H 0.071 0.929 30 H 0.083 0.917 31 H 0.088 0.912 32 H 0.071 0.929 33 H 0.102 0.898 34 H 0.090 0.910 35 H 0.066 0.934 36 H 0.095 0.905 37 H 0.091 0.909 38 H 0.055 0.945 39 H 0.020 0.980 40 H 0.073 0.927 41 H 0.071 0.929 42 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -11.290 -13.200 11.794 20.995 hybrid contribution -0.437 1.538 -0.431 1.656 sum -11.727 -11.662 11.363 20.066 Atomic orbital electron populations 1.22897 0.79749 1.03620 1.00750 1.87831 1.21173 1.28642 1.95580 1.22531 0.92909 0.84439 1.01008 1.21070 0.92905 0.96584 0.99341 0.92032 1.21502 0.95257 1.01059 0.96308 1.21567 0.95581 0.95884 1.02046 1.22134 0.99978 0.95756 0.89282 1.61786 1.06754 1.24409 1.35166 1.22041 1.00356 0.90127 0.92980 1.19204 0.98959 0.90545 0.91317 0.86830 1.29363 0.92043 0.91495 0.91949 1.80975 1.12036 1.14213 1.12222 1.18986 0.95696 0.89133 0.96176 1.21522 1.37131 1.00702 0.98466 0.92936 1.25684 0.94934 0.96896 1.01055 1.70020 1.39866 1.09241 1.37158 0.85777 0.79166 0.77197 0.80616 1.18720 1.20654 1.20788 1.22076 0.86873 0.95928 1.01920 0.92979 0.93655 0.88734 0.91846 0.92932 0.91674 0.91248 0.92944 0.89780 0.91046 0.93420 0.90469 0.90923 0.94535 0.98034 0.92689 0.92903 0.90681 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.37 11.01 113.37 1.25 1.62 16 2 O -0.41 -8.66 10.29 -148.98 -1.53 -10.19 16 3 C 0.07 1.28 5.32 71.98 0.38 1.67 16 4 C -0.08 -1.71 2.59 -10.74 -0.03 -1.74 16 5 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 6 C -0.10 -1.95 5.15 30.67 0.16 -1.80 16 7 C -0.11 -2.19 6.09 30.65 0.19 -2.01 16 8 C 0.06 1.18 5.44 86.33 0.47 1.65 16 9 N -0.56 -14.31 4.31 -896.37 -3.87 -18.17 16 10 C 0.07 2.10 4.34 86.30 0.37 2.47 16 11 C 0.02 0.79 2.23 -12.60 -0.03 0.76 16 12 H 0.11 3.82 6.49 -2.39 -0.02 3.81 16 13 C 0.27 11.32 13.67 89.44 1.22 12.55 16 14 N -0.52 -24.00 18.54 20.01 0.37 -23.63 16 15 C 0.04 1.79 4.42 29.85 0.13 1.92 16 16 C -0.54 -28.69 8.60 25.60 0.22 -28.47 16 17 H 0.05 2.77 7.59 -2.91 -0.02 2.75 16 18 C 0.01 0.73 5.46 84.65 0.46 1.19 16 19 N -0.92 -52.88 13.29 21.45 0.28 -52.60 16 20 Si 0.95 43.43 29.54 68.60 2.03 45.45 16 21 H -0.26 -11.42 7.11 99.48 0.71 -10.71 16 22 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 23 H -0.28 -13.11 7.11 99.48 0.71 -12.40 16 24 C 0.06 1.33 4.59 86.33 0.40 1.73 16 25 H 0.05 0.60 8.14 -2.39 -0.02 0.58 16 26 H 0.04 0.59 8.14 -2.39 -0.02 0.58 16 27 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 28 H 0.06 0.99 8.14 -2.39 -0.02 0.98 16 29 H 0.05 0.97 8.14 -2.38 -0.02 0.95 16 30 H 0.06 1.28 7.90 -2.39 -0.02 1.26 16 31 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 32 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 33 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 34 H 0.07 1.55 7.96 -2.39 -0.02 1.53 16 35 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 36 H 0.08 2.24 7.87 -2.39 -0.02 2.22 16 37 H 0.07 1.82 8.05 -2.39 -0.02 1.80 16 38 H 0.04 1.68 8.14 -2.39 -0.02 1.66 16 39 H 0.00 0.06 8.14 -2.39 -0.02 0.04 16 40 H 0.26 14.40 8.31 -92.71 -0.77 13.63 16 41 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 42 H 0.07 1.77 6.42 -2.39 -0.02 1.76 16 Total: -1.00 -64.34 342.63 3.45 -60.89 By element: Atomic # 1 Polarization: 5.74 SS G_CDS: 0.97 Total: 6.71 kcal Atomic # 6 Polarization: -13.66 SS G_CDS: 5.20 Total: -8.46 kcal Atomic # 7 Polarization: -91.19 SS G_CDS: -3.21 Total: -94.40 kcal Atomic # 8 Polarization: -8.66 SS G_CDS: -1.53 Total: -10.19 kcal Atomic # 14 Polarization: 43.43 SS G_CDS: 2.03 Total: 45.45 kcal Total: -64.34 3.45 -60.89 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000113509151.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.097 kcal (2) G-P(sol) polarization free energy of solvation -64.337 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.240 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.450 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.888 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.790 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds