Wall clock time and date at job start Mon Mar 30 2020 00:28:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.42899 * 114.00013 * 2 1 4 4 C 1.53000 * 109.46839 * 179.97438 * 3 2 1 5 5 H 1.09000 * 109.50637 * 305.07489 * 4 3 2 6 6 C 1.53117 * 109.50241 * 65.20067 * 4 3 2 7 7 C 1.53127 * 109.15989 * 177.59130 * 6 4 3 8 8 C 1.53038 * 109.27941 * 302.34585 * 7 6 4 9 9 N 1.46830 * 109.51757 * 59.17550 * 8 7 6 10 10 C 1.46901 * 110.98168 * 174.15669 * 9 8 7 11 11 C 1.53000 * 109.47158 * 294.21498 * 10 9 8 12 12 H 1.09000 * 109.47115 * 55.00274 * 11 10 9 13 13 C 1.47205 * 109.47164 * 295.00173 * 11 10 9 14 14 N 7.57296 * 152.46732 * 51.70548 * 2 1 3 15 15 C 1.53001 * 109.46963 * 175.00160 * 11 10 9 16 16 C 1.50705 * 109.47034 * 185.00000 * 15 11 10 17 17 H 1.07999 * 119.99727 * 0.02562 * 16 15 11 18 18 C 1.37877 * 120.00127 * 180.02562 * 16 15 11 19 19 N 1.31516 * 119.99772 * 359.97438 * 18 16 15 20 20 Si 1.86790 * 120.00079 * 180.02562 * 18 16 15 21 21 H 1.48503 * 109.47287 * 359.97438 * 20 18 16 22 22 H 1.48496 * 109.47310 * 119.99869 * 20 18 16 23 23 H 1.48497 * 109.47251 * 239.99720 * 20 18 16 24 24 C 1.46847 * 111.21086 * 298.25173 * 9 8 7 25 25 H 1.08998 * 109.46845 * 60.00098 * 1 2 3 26 26 H 1.08994 * 109.46893 * 179.97438 * 1 2 3 27 27 H 1.08994 * 109.47007 * 299.99842 * 1 2 3 28 28 H 1.09001 * 109.46875 * 60.00248 * 3 2 1 29 29 H 1.08993 * 109.47225 * 300.00052 * 3 2 1 30 30 H 1.08997 * 109.52073 * 297.49809 * 6 4 3 31 31 H 1.08998 * 109.52156 * 57.62450 * 6 4 3 32 32 H 1.08997 * 109.50037 * 62.28538 * 7 6 4 33 33 H 1.08996 * 109.50157 * 182.36309 * 7 6 4 34 34 H 1.08995 * 109.46433 * 179.19502 * 8 7 6 35 35 H 1.09004 * 109.46142 * 299.17444 * 8 7 6 36 36 H 1.09001 * 109.46985 * 54.21857 * 10 9 8 37 37 H 1.09002 * 109.46593 * 174.21847 * 10 9 8 38 38 H 1.08999 * 109.47350 * 305.00072 * 15 11 10 39 39 H 1.09001 * 109.46935 * 65.00446 * 15 11 10 40 40 H 0.96995 * 120.00196 * 180.02562 * 19 18 16 41 41 H 1.09002 * 109.46448 * 301.73578 * 24 9 8 42 42 H 1.08994 * 109.45958 * 181.75943 * 24 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 1 3.8513 0.5674 0.8417 6 6 3.9978 0.5404 -1.3093 7 6 5.5277 0.4782 -1.3262 8 6 6.0927 1.8909 -1.1620 9 7 5.6222 2.4631 0.1057 10 6 6.2550 3.7637 0.3628 11 6 7.7564 3.5661 0.5810 12 1 8.1810 3.0373 -0.2723 13 6 7.9749 2.7780 1.8049 14 7 8.1444 2.1694 2.7474 15 6 8.4347 4.9300 0.7247 16 6 9.9271 4.7417 0.8166 17 1 10.3495 3.7485 0.7760 18 6 10.7532 5.8372 0.9524 19 7 10.2387 7.0466 1.0013 20 14 12.6030 5.6038 1.0655 21 1 12.9251 4.1563 0.9858 22 1 13.2618 6.3204 -0.0559 23 1 13.0927 6.1489 2.3570 24 6 4.1583 2.5769 0.1264 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.6887 1.8463 0.8900 29 1 1.6887 1.8463 -0.8899 30 1 3.5913 -0.4683 -1.3824 31 1 3.6472 1.1365 -2.1518 32 1 5.8754 -0.1504 -0.5064 33 1 5.8643 0.0589 -2.2743 34 1 7.1818 1.8485 -1.1593 35 1 5.7556 2.5154 -1.9894 36 1 6.0954 4.4207 -0.4921 37 1 5.8144 4.2124 1.2532 38 1 8.1989 5.5463 -0.1428 39 1 8.0742 5.4216 1.6284 40 1 10.8198 7.8173 1.0965 41 1 3.8304 3.1980 -0.7072 42 1 3.8427 3.0325 1.0649 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000113509155.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:28:58 Heat of formation + Delta-G solvation = -39.451239 kcal Electronic energy + Delta-G solvation = -20241.237589 eV Core-core repulsion = 17220.541837 eV Total energy + Delta-G solvation = -3020.695752 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.50159 -37.90745 -36.33012 -34.21558 -33.16262 -31.70770 -31.17582 -27.49927 -26.83239 -25.46563 -24.22043 -22.60282 -21.84325 -21.17142 -19.72779 -16.71771 -16.61466 -16.48753 -16.05093 -15.83934 -15.06575 -14.73197 -14.39667 -14.37735 -13.96346 -13.70708 -13.16502 -12.92802 -12.72939 -12.33563 -12.23052 -11.99839 -11.90354 -11.76002 -11.45860 -11.22802 -11.06669 -11.03200 -10.74656 -10.65815 -10.56946 -10.45472 -10.33773 -10.00814 -9.86900 -9.52026 -9.19255 -8.45705 -8.16105 -6.09425 -4.12296 3.28769 3.37063 3.41185 3.43620 3.78502 3.87994 4.10171 4.41921 4.62655 4.75397 4.86716 4.94869 5.01401 5.04929 5.17825 5.23018 5.28841 5.29703 5.34727 5.38063 5.42401 5.58592 5.59633 5.62884 5.78161 5.80456 5.93922 6.03134 6.05319 6.12042 6.24175 6.38270 6.41106 6.53469 6.92073 7.21333 7.23741 7.43274 7.53730 7.86297 8.23873 8.62520 8.92813 9.53227 11.01577 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.039879 B = 0.003480 C = 0.003449 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 701.947074 B = 8043.931569 C = 8117.162704 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.389 6.389 3 C 0.067 3.933 4 C -0.084 4.084 5 H 0.087 0.913 6 C -0.110 4.110 7 C -0.117 4.117 8 C 0.049 3.951 9 N -0.540 5.540 10 C 0.063 3.937 11 C 0.010 3.990 12 H 0.100 0.900 13 C 0.257 3.743 14 N -0.480 5.480 15 C 0.031 3.969 16 C -0.524 4.524 17 H 0.057 0.943 18 C 0.062 3.938 19 N -0.892 5.892 20 Si 0.891 3.109 21 H -0.272 1.272 22 H -0.283 1.283 23 H -0.284 1.284 24 C 0.065 3.935 25 H 0.039 0.961 26 H 0.084 0.916 27 H 0.040 0.960 28 H 0.050 0.950 29 H 0.048 0.952 30 H 0.068 0.932 31 H 0.056 0.944 32 H 0.070 0.930 33 H 0.065 0.935 34 H 0.083 0.917 35 H 0.035 0.965 36 H 0.053 0.947 37 H 0.079 0.921 38 H 0.037 0.963 39 H 0.026 0.974 40 H 0.262 0.738 41 H 0.034 0.966 42 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.879 -9.336 -7.109 21.386 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.308 6.308 3 C -0.010 4.010 4 C -0.103 4.103 5 H 0.105 0.895 6 C -0.147 4.147 7 C -0.155 4.155 8 C -0.078 4.078 9 N -0.264 5.264 10 C -0.065 4.065 11 C -0.012 4.012 12 H 0.118 0.882 13 C -0.060 4.060 14 N -0.157 5.157 15 C -0.008 4.008 16 C -0.563 4.563 17 H 0.076 0.924 18 C -0.140 4.140 19 N -0.531 5.531 20 Si 0.719 3.281 21 H -0.197 1.197 22 H -0.209 1.209 23 H -0.210 1.210 24 C -0.063 4.063 25 H 0.058 0.942 26 H 0.102 0.898 27 H 0.058 0.942 28 H 0.068 0.932 29 H 0.066 0.934 30 H 0.086 0.914 31 H 0.074 0.926 32 H 0.089 0.911 33 H 0.084 0.916 34 H 0.101 0.899 35 H 0.053 0.947 36 H 0.071 0.929 37 H 0.098 0.902 38 H 0.055 0.945 39 H 0.044 0.956 40 H 0.071 0.929 41 H 0.053 0.947 42 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -17.325 -10.555 -5.298 20.967 hybrid contribution 0.528 1.097 -0.898 1.513 sum -16.797 -9.458 -6.195 20.248 Atomic orbital electron populations 1.22721 0.81294 1.02610 0.99865 1.87883 1.19392 1.28091 1.95384 1.22548 0.93907 0.84495 1.00055 1.21154 0.91796 0.97377 0.99941 0.89456 1.21554 0.95783 1.01077 0.96301 1.21592 0.95152 0.96870 1.01900 1.22196 1.00907 0.95116 0.89629 1.61874 1.05318 1.25406 1.33835 1.22220 0.93775 0.88975 1.01531 1.19258 0.94438 0.98079 0.89450 0.88210 1.28772 0.91160 0.91923 0.94141 1.80921 1.10535 1.11882 1.12316 1.19178 0.95121 0.87763 0.98696 1.21182 0.91221 0.93087 1.50774 0.92446 1.24955 0.98914 0.95194 0.94954 1.69947 1.35242 0.97922 1.49970 0.86537 0.85477 0.78398 0.77692 1.19654 1.20871 1.20971 1.21947 0.88020 0.95329 1.01006 0.94226 0.89756 0.94153 0.93223 0.93401 0.91364 0.92573 0.91126 0.91591 0.89900 0.94708 0.92859 0.90237 0.94494 0.95569 0.92868 0.94735 0.90687 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 11.01 101.05 1.11 1.35 16 2 O -0.39 -4.13 10.30 -35.23 -0.36 -4.49 16 3 C 0.07 0.64 5.32 37.16 0.20 0.84 16 4 C -0.08 -0.91 2.59 -90.54 -0.23 -1.15 16 5 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16 6 C -0.11 -1.14 5.16 -26.61 -0.14 -1.28 16 7 C -0.12 -1.30 6.09 -26.65 -0.16 -1.46 16 8 C 0.05 0.61 5.29 -3.84 -0.02 0.59 16 9 N -0.54 -7.37 4.36 -234.68 -1.02 -8.39 16 10 C 0.06 0.95 4.32 -3.82 -0.02 0.93 16 11 C 0.01 0.18 2.13 -93.40 -0.20 -0.02 16 12 H 0.10 1.75 6.22 -51.93 -0.32 1.43 16 13 C 0.26 5.45 13.66 -20.80 -0.28 5.16 16 14 N -0.48 -11.06 18.53 42.10 0.78 -10.28 16 15 C 0.03 0.72 4.42 -27.88 -0.12 0.60 16 16 C -0.52 -13.99 8.60 -34.44 -0.30 -14.29 16 17 H 0.06 1.53 7.59 -52.49 -0.40 1.14 16 18 C 0.06 1.70 5.46 -17.82 -0.10 1.61 16 19 N -0.89 -25.54 13.29 55.43 0.74 -24.81 16 20 Si 0.89 21.36 29.54 -169.99 -5.02 16.34 16 21 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 22 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 23 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 24 C 0.07 0.74 4.74 -3.83 -0.02 0.73 16 25 H 0.04 0.25 8.14 -51.93 -0.42 -0.18 16 26 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 27 H 0.04 0.26 8.14 -51.93 -0.42 -0.16 16 28 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.07 0.73 7.90 -51.93 -0.41 0.32 16 31 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 33 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.08 1.08 6.12 -51.93 -0.32 0.76 16 35 H 0.03 0.40 8.14 -51.93 -0.42 -0.02 16 36 H 0.05 0.74 8.12 -51.93 -0.42 0.32 16 37 H 0.08 1.20 7.99 -51.93 -0.41 0.78 16 38 H 0.04 0.86 8.14 -51.93 -0.42 0.44 16 39 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 40 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 41 H 0.03 0.37 8.14 -51.93 -0.42 -0.06 16 42 H 0.07 0.84 8.01 -51.93 -0.42 0.42 16 LS Contribution 342.24 15.07 5.16 5.16 Total: -1.00 -30.50 342.24 -7.34 -37.84 By element: Atomic # 1 Polarization: 2.36 SS G_CDS: -7.33 Total: -4.97 kcal Atomic # 6 Polarization: -6.12 SS G_CDS: -0.28 Total: -6.40 kcal Atomic # 7 Polarization: -43.97 SS G_CDS: 0.49 Total: -43.48 kcal Atomic # 8 Polarization: -4.13 SS G_CDS: -0.36 Total: -4.49 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -30.50 -7.34 -37.84 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000113509155.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.609 kcal (2) G-P(sol) polarization free energy of solvation -30.498 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.107 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.344 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.842 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.451 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds