Wall clock time and date at job start Mon Mar 30 2020 00:28:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.42899 * 114.00013 * 2 1 4 4 C 1.53000 * 109.46839 * 179.97438 * 3 2 1 5 5 H 1.09000 * 109.50637 * 305.07489 * 4 3 2 6 6 C 1.53117 * 109.50241 * 65.20067 * 4 3 2 7 7 C 1.53127 * 109.15989 * 177.59130 * 6 4 3 8 8 C 1.53038 * 109.27941 * 302.34585 * 7 6 4 9 9 N 1.46830 * 109.51757 * 59.17550 * 8 7 6 10 10 C 1.46901 * 110.98168 * 174.15669 * 9 8 7 11 11 C 1.53000 * 109.47158 * 294.21498 * 10 9 8 12 12 H 1.09000 * 109.47115 * 55.00274 * 11 10 9 13 13 C 1.47205 * 109.47164 * 295.00173 * 11 10 9 14 14 N 7.57296 * 152.46732 * 51.70548 * 2 1 3 15 15 C 1.53001 * 109.46963 * 175.00160 * 11 10 9 16 16 C 1.50705 * 109.47034 * 185.00000 * 15 11 10 17 17 H 1.07999 * 119.99727 * 0.02562 * 16 15 11 18 18 C 1.37877 * 120.00127 * 180.02562 * 16 15 11 19 19 N 1.31516 * 119.99772 * 359.97438 * 18 16 15 20 20 Si 1.86790 * 120.00079 * 180.02562 * 18 16 15 21 21 H 1.48503 * 109.47287 * 359.97438 * 20 18 16 22 22 H 1.48496 * 109.47310 * 119.99869 * 20 18 16 23 23 H 1.48497 * 109.47251 * 239.99720 * 20 18 16 24 24 C 1.46847 * 111.21086 * 298.25173 * 9 8 7 25 25 H 1.08998 * 109.46845 * 60.00098 * 1 2 3 26 26 H 1.08994 * 109.46893 * 179.97438 * 1 2 3 27 27 H 1.08994 * 109.47007 * 299.99842 * 1 2 3 28 28 H 1.09001 * 109.46875 * 60.00248 * 3 2 1 29 29 H 1.08993 * 109.47225 * 300.00052 * 3 2 1 30 30 H 1.08997 * 109.52073 * 297.49809 * 6 4 3 31 31 H 1.08998 * 109.52156 * 57.62450 * 6 4 3 32 32 H 1.08997 * 109.50037 * 62.28538 * 7 6 4 33 33 H 1.08996 * 109.50157 * 182.36309 * 7 6 4 34 34 H 1.08995 * 109.46433 * 179.19502 * 8 7 6 35 35 H 1.09004 * 109.46142 * 299.17444 * 8 7 6 36 36 H 1.09001 * 109.46985 * 54.21857 * 10 9 8 37 37 H 1.09002 * 109.46593 * 174.21847 * 10 9 8 38 38 H 1.08999 * 109.47350 * 305.00072 * 15 11 10 39 39 H 1.09001 * 109.46935 * 65.00446 * 15 11 10 40 40 H 0.96995 * 120.00196 * 180.02562 * 19 18 16 41 41 H 1.09002 * 109.46448 * 301.73578 * 24 9 8 42 42 H 1.08994 * 109.45958 * 181.75943 * 24 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 1 3.8513 0.5674 0.8417 6 6 3.9978 0.5404 -1.3093 7 6 5.5277 0.4782 -1.3262 8 6 6.0927 1.8909 -1.1620 9 7 5.6222 2.4631 0.1057 10 6 6.2550 3.7637 0.3628 11 6 7.7564 3.5661 0.5810 12 1 8.1810 3.0373 -0.2723 13 6 7.9749 2.7780 1.8049 14 7 8.1444 2.1694 2.7474 15 6 8.4347 4.9300 0.7247 16 6 9.9271 4.7417 0.8166 17 1 10.3495 3.7485 0.7760 18 6 10.7532 5.8372 0.9524 19 7 10.2387 7.0466 1.0013 20 14 12.6030 5.6038 1.0655 21 1 12.9251 4.1563 0.9858 22 1 13.2618 6.3204 -0.0559 23 1 13.0927 6.1489 2.3570 24 6 4.1583 2.5769 0.1264 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.6887 1.8463 0.8900 29 1 1.6887 1.8463 -0.8899 30 1 3.5913 -0.4683 -1.3824 31 1 3.6472 1.1365 -2.1518 32 1 5.8754 -0.1504 -0.5064 33 1 5.8643 0.0589 -2.2743 34 1 7.1818 1.8485 -1.1593 35 1 5.7556 2.5154 -1.9894 36 1 6.0954 4.4207 -0.4921 37 1 5.8144 4.2124 1.2532 38 1 8.1989 5.5463 -0.1428 39 1 8.0742 5.4216 1.6284 40 1 10.8198 7.8173 1.0965 41 1 3.8304 3.1980 -0.7072 42 1 3.8427 3.0325 1.0649 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000113509155.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:28:58 Heat of formation + Delta-G solvation = -57.998154 kcal Electronic energy + Delta-G solvation = -20242.041844 eV Core-core repulsion = 17220.541837 eV Total energy + Delta-G solvation = -3021.500006 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.46595 -38.81348 -37.77372 -35.76871 -34.82113 -32.84507 -32.50907 -28.74550 -27.92185 -26.30741 -25.54039 -23.62797 -23.57924 -22.25019 -20.61216 -18.53245 -18.13876 -17.34068 -17.03577 -16.72702 -16.46862 -15.86279 -15.61406 -15.55574 -14.99881 -14.65960 -14.58367 -14.27535 -14.14232 -13.80917 -13.55535 -13.23590 -13.03862 -12.97552 -12.81548 -12.66890 -12.50990 -12.39236 -12.32232 -11.95009 -11.86234 -11.53437 -11.42867 -11.36665 -11.12610 -10.95224 -10.55526 -10.54996 -9.18032 -8.19374 -6.27278 1.39051 1.42364 1.52722 2.08084 2.16042 2.41588 2.66603 3.14773 3.17436 3.37822 3.79957 3.90422 4.02487 4.13380 4.28384 4.38617 4.45867 4.48332 4.51682 4.54234 4.60424 4.63665 4.67956 4.73821 4.81029 4.87727 4.90182 4.91649 5.03384 5.09073 5.15587 5.23916 5.40621 5.47343 5.51650 5.62537 5.79815 6.10835 6.21807 6.23964 6.31643 6.83789 6.94420 7.41272 8.91761 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.039879 B = 0.003480 C = 0.003449 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 701.947074 B = 8043.931569 C = 8117.162704 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.414 6.414 3 C 0.070 3.930 4 C -0.081 4.081 5 H 0.062 0.938 6 C -0.104 4.104 7 C -0.114 4.114 8 C 0.047 3.953 9 N -0.556 5.556 10 C 0.074 3.926 11 C 0.020 3.980 12 H 0.116 0.884 13 C 0.267 3.733 14 N -0.515 5.515 15 C 0.039 3.961 16 C -0.537 4.537 17 H 0.052 0.948 18 C 0.012 3.988 19 N -0.923 5.923 20 Si 0.948 3.052 21 H -0.270 1.270 22 H -0.272 1.272 23 H -0.285 1.285 24 C 0.067 3.933 25 H 0.051 0.949 26 H 0.093 0.907 27 H 0.046 0.954 28 H 0.054 0.946 29 H 0.063 0.937 30 H 0.064 0.936 31 H 0.069 0.931 32 H 0.051 0.949 33 H 0.082 0.918 34 H 0.073 0.927 35 H 0.049 0.951 36 H 0.071 0.929 37 H 0.077 0.923 38 H 0.036 0.964 39 H 0.002 0.998 40 H 0.264 0.736 41 H 0.051 0.949 42 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.727 -9.608 -8.449 22.680 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.333 6.333 3 C -0.007 4.007 4 C -0.100 4.100 5 H 0.081 0.919 6 C -0.141 4.141 7 C -0.151 4.151 8 C -0.080 4.080 9 N -0.281 5.281 10 C -0.055 4.055 11 C -0.002 4.002 12 H 0.133 0.867 13 C -0.049 4.049 14 N -0.193 5.193 15 C 0.000 4.000 16 C -0.576 4.576 17 H 0.071 0.929 18 C -0.187 4.187 19 N -0.563 5.563 20 Si 0.774 3.226 21 H -0.195 1.195 22 H -0.197 1.197 23 H -0.211 1.211 24 C -0.061 4.061 25 H 0.070 0.930 26 H 0.112 0.888 27 H 0.065 0.935 28 H 0.073 0.927 29 H 0.081 0.919 30 H 0.083 0.917 31 H 0.087 0.913 32 H 0.070 0.930 33 H 0.100 0.900 34 H 0.091 0.909 35 H 0.067 0.933 36 H 0.089 0.911 37 H 0.095 0.905 38 H 0.054 0.946 39 H 0.020 0.980 40 H 0.073 0.927 41 H 0.069 0.931 42 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -18.185 -10.839 -6.645 22.189 hybrid contribution 0.754 1.153 -0.475 1.457 sum -17.431 -9.687 -7.120 21.175 Atomic orbital electron populations 1.22897 0.79703 1.03628 1.00773 1.87843 1.21217 1.28690 1.95580 1.22515 0.92748 0.84435 1.01005 1.21082 0.92993 0.96610 0.99271 0.91936 1.21504 0.95097 1.01097 0.96423 1.21565 0.95690 0.95889 1.02003 1.22243 1.00402 0.95902 0.89477 1.61808 1.06761 1.24532 1.34985 1.22035 0.91046 0.90139 1.02264 1.19226 0.96959 0.95241 0.88749 0.86692 1.29288 0.90058 0.91373 0.94179 1.80916 1.11856 1.13091 1.13416 1.18992 0.93705 0.89979 0.97349 1.21571 0.93219 0.92771 1.50006 0.92937 1.25700 1.02948 0.95120 0.94966 1.70032 1.36636 0.98554 1.51076 0.85649 0.80893 0.78329 0.77744 1.19463 1.19716 1.21142 1.21969 0.86484 0.95912 1.01723 0.93024 0.88809 0.93493 0.92729 0.91922 0.91690 0.91264 0.93008 0.89954 0.90888 0.93262 0.91085 0.90453 0.94565 0.97988 0.92703 0.93065 0.90683 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.33 11.01 113.37 1.25 1.58 16 2 O -0.41 -8.18 10.30 -148.98 -1.53 -9.72 16 3 C 0.07 1.20 5.32 71.98 0.38 1.58 16 4 C -0.08 -1.64 2.59 -10.74 -0.03 -1.67 16 5 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 6 C -0.10 -1.97 5.16 30.68 0.16 -1.81 16 7 C -0.11 -2.35 6.09 30.65 0.19 -2.16 16 8 C 0.05 1.07 5.29 86.33 0.46 1.53 16 9 N -0.56 -14.34 4.36 -896.39 -3.91 -18.24 16 10 C 0.07 2.10 4.32 86.30 0.37 2.48 16 11 C 0.02 0.73 2.13 -12.60 -0.03 0.70 16 12 H 0.12 3.88 6.22 -2.39 -0.01 3.86 16 13 C 0.27 11.29 13.66 89.46 1.22 12.51 16 14 N -0.52 -23.85 18.53 19.99 0.37 -23.48 16 15 C 0.04 1.78 4.42 29.85 0.13 1.91 16 16 C -0.54 -28.60 8.60 25.60 0.22 -28.38 16 17 H 0.05 2.79 7.59 -2.91 -0.02 2.77 16 18 C 0.01 0.63 5.46 84.65 0.46 1.10 16 19 N -0.92 -52.91 13.29 21.45 0.28 -52.63 16 20 Si 0.95 43.59 29.54 68.60 2.03 45.61 16 21 H -0.27 -12.22 7.11 99.48 0.71 -11.52 16 22 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 23 H -0.29 -13.12 7.11 99.48 0.71 -12.41 16 24 C 0.07 1.40 4.74 86.33 0.41 1.81 16 25 H 0.05 0.53 8.14 -2.39 -0.02 0.51 16 26 H 0.09 0.98 8.14 -2.39 -0.02 0.97 16 27 H 0.05 0.53 8.14 -2.39 -0.02 0.51 16 28 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 29 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 30 H 0.06 1.29 7.90 -2.39 -0.02 1.27 16 31 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 32 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 33 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 34 H 0.07 1.79 6.12 -2.39 -0.01 1.78 16 35 H 0.05 0.99 8.14 -2.38 -0.02 0.97 16 36 H 0.07 1.79 8.12 -2.39 -0.02 1.77 16 37 H 0.08 2.24 7.99 -2.39 -0.02 2.22 16 38 H 0.04 1.68 8.14 -2.39 -0.02 1.66 16 39 H 0.00 0.09 8.14 -2.39 -0.02 0.07 16 40 H 0.26 14.32 8.31 -92.71 -0.77 13.55 16 41 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 42 H 0.07 1.56 8.01 -2.39 -0.02 1.54 16 Total: -1.00 -64.44 342.24 3.41 -61.03 By element: Atomic # 1 Polarization: 5.27 SS G_CDS: 0.97 Total: 6.24 kcal Atomic # 6 Polarization: -14.02 SS G_CDS: 5.20 Total: -8.82 kcal Atomic # 7 Polarization: -91.10 SS G_CDS: -3.25 Total: -94.35 kcal Atomic # 8 Polarization: -8.18 SS G_CDS: -1.53 Total: -9.72 kcal Atomic # 14 Polarization: 43.59 SS G_CDS: 2.03 Total: 45.61 kcal Total: -64.44 3.41 -61.03 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000113509155.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.033 kcal (2) G-P(sol) polarization free energy of solvation -64.441 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.408 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.409 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.031 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.998 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds