Wall clock time and date at job start Mon Mar 30 2020 00:31:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.34433 * 126.82205 * 2 1 4 4 N 1.30827 * 108.08068 * 179.97438 * 3 2 1 5 5 C 1.33251 * 109.82607 * 0.02562 * 4 3 2 6 6 C 1.50697 * 125.52550 * 180.02562 * 5 4 3 7 7 C 1.52997 * 109.47466 * 90.02345 * 6 5 4 8 8 N 1.46899 * 109.47254 * 179.97438 * 7 6 5 9 9 C 1.46904 * 111.00029 * 179.97438 * 8 7 6 10 10 C 1.52997 * 109.46950 * 180.02562 * 9 8 7 11 11 C 1.53001 * 109.47312 * 300.00123 * 10 9 8 12 12 C 1.52997 * 109.47169 * 60.00159 * 10 9 8 13 13 C 1.53003 * 109.47071 * 180.02562 * 10 9 8 14 14 C 1.50704 * 109.47153 * 179.97438 * 13 10 9 15 15 H 1.07997 * 119.99780 * 359.97438 * 14 13 10 16 16 C 1.37871 * 119.99793 * 180.02562 * 14 13 10 17 17 N 1.31521 * 120.00052 * 0.02562 * 16 14 13 18 18 Si 1.86797 * 120.00014 * 179.97438 * 16 14 13 19 19 H 1.48505 * 109.47121 * 60.00049 * 18 16 14 20 20 H 1.48506 * 109.47165 * 179.97438 * 18 16 14 21 21 H 1.48500 * 109.47240 * 300.00130 * 18 16 14 22 22 N 1.30705 * 108.94593 * 0.26209 * 5 4 3 23 23 H 1.08997 * 109.46581 * 89.97588 * 1 2 3 24 24 H 1.08997 * 109.46836 * 209.97629 * 1 2 3 25 25 H 1.08998 * 109.47113 * 329.97798 * 1 2 3 26 26 H 1.08001 * 125.95928 * 359.97438 * 3 2 1 27 27 H 1.09002 * 109.47120 * 330.02098 * 6 5 4 28 28 H 1.08998 * 109.46862 * 210.02900 * 6 5 4 29 29 H 1.09002 * 109.47153 * 59.99773 * 7 6 5 30 30 H 1.09001 * 109.46832 * 299.99964 * 7 6 5 31 31 H 1.00902 * 111.00582 * 303.95797 * 8 7 6 32 32 H 1.08995 * 109.47167 * 300.00240 * 9 8 7 33 33 H 1.09003 * 109.46442 * 60.00214 * 9 8 7 34 34 H 1.09002 * 109.47029 * 60.00405 * 11 10 9 35 35 H 1.09000 * 109.47152 * 180.02562 * 11 10 9 36 36 H 1.08993 * 109.47356 * 300.00089 * 11 10 9 37 37 H 1.09005 * 109.46874 * 60.00300 * 12 10 9 38 38 H 1.09000 * 109.47103 * 179.97438 * 12 10 9 39 39 H 1.09002 * 109.47446 * 299.99763 * 12 10 9 40 40 H 1.08995 * 109.47051 * 300.00167 * 13 10 9 41 41 H 1.09003 * 109.46901 * 60.00330 * 13 10 9 42 42 H 0.97005 * 119.99618 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2707 1.0761 0.0000 4 7 3.5096 0.6558 0.0006 5 6 3.5349 -0.6765 0.0004 6 6 4.7777 -1.5287 0.0014 7 6 5.1966 -1.8179 1.4442 8 7 6.4078 -2.6492 1.4452 9 6 6.8407 -2.9472 2.8170 10 6 8.1021 -3.8122 2.7771 11 6 7.8008 -5.1198 2.0420 12 6 9.2138 -3.0593 2.0437 13 6 8.5527 -4.1231 4.2058 14 6 9.7948 -4.9756 4.1666 15 1 10.2199 -5.2669 3.2175 16 6 10.3876 -5.3845 5.3422 17 7 9.8689 -5.0310 6.4980 18 14 11.9268 -6.4418 5.2937 19 1 13.0067 -5.7116 4.5824 20 1 12.3641 -6.7434 6.6804 21 1 11.6336 -7.7104 4.5796 22 7 2.3069 -1.1242 -0.0060 23 1 -0.3632 0.0004 -1.0277 24 1 -0.3633 -0.8902 0.5135 25 1 -0.3633 0.8898 0.5142 26 1 1.9510 2.1077 -0.0004 27 1 5.5813 -1.0000 -0.5113 28 1 4.5746 -2.4679 -0.5132 29 1 4.3930 -2.3467 1.9569 30 1 5.3997 -0.8787 1.9587 31 1 6.2644 -3.4979 0.9185 32 1 7.0557 -2.0157 3.3405 33 1 6.0484 -3.4833 3.3395 34 1 7.4797 -4.8986 1.0241 35 1 8.6994 -5.7362 2.0140 36 1 7.0089 -5.6562 2.5644 37 1 9.4285 -2.1277 2.5675 38 1 10.1126 -3.6753 2.0156 39 1 8.8926 -2.8381 1.0258 40 1 8.7671 -3.1918 4.7299 41 1 7.7605 -4.6597 4.7279 42 1 10.2862 -5.3184 7.3251 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000122961539.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:31:45 Heat of formation + Delta-G solvation = 70.864815 kcal Electronic energy + Delta-G solvation = -19698.168336 eV Core-core repulsion = 16714.548999 eV Total energy + Delta-G solvation = -2983.619338 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.180 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -42.28417 -37.71597 -35.44933 -34.09273 -32.38677 -31.63026 -29.98813 -27.26100 -26.73397 -26.25514 -25.01741 -23.02710 -22.32832 -21.82733 -20.45615 -17.80826 -17.18780 -16.27965 -16.17544 -15.74862 -15.26741 -14.76362 -14.40502 -14.14632 -13.70175 -13.54193 -13.43500 -13.04658 -12.62690 -12.25110 -12.19805 -12.02090 -11.91276 -11.49628 -11.23685 -10.89055 -10.77673 -10.72177 -10.42159 -10.19955 -10.18529 -10.09264 -10.03285 -9.68351 -9.61203 -8.95326 -8.77959 -8.26638 -8.03787 -5.91371 -3.91332 1.37064 2.04667 2.70332 3.38362 3.42692 3.45128 3.87210 4.13407 4.40626 4.53229 4.66786 4.83961 4.84987 4.94665 5.19068 5.34309 5.44298 5.57177 5.75510 5.82620 5.95338 6.02462 6.06381 6.09639 6.26966 6.33984 6.41140 6.53077 6.58505 6.73894 6.86059 6.90171 7.27935 7.28243 7.33426 7.45432 7.73084 7.77273 7.89867 7.92023 8.09254 8.53757 9.13935 9.71122 11.20339 Molecular weight = 266.18amu Principal moments of inertia in cm(-1) A = 0.050480 B = 0.002788 C = 0.002755 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 554.542252 B =10041.456670 C =10162.203796 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.098 3.902 2 N -0.390 5.390 3 C 0.251 3.749 4 N -0.538 5.538 5 C 0.234 3.766 6 C -0.024 4.024 7 C 0.068 3.932 8 N -0.685 5.685 9 C 0.071 3.929 10 C -0.058 4.058 11 C -0.129 4.129 12 C -0.116 4.116 13 C 0.033 3.967 14 C -0.506 4.506 15 H 0.059 0.941 16 C 0.054 3.946 17 N -0.899 5.899 18 Si 0.888 3.112 19 H -0.277 1.277 20 H -0.289 1.289 21 H -0.278 1.278 22 N -0.318 5.318 23 H 0.078 0.922 24 H 0.091 0.909 25 H 0.092 0.908 26 H 0.218 0.782 27 H 0.101 0.899 28 H 0.084 0.916 29 H 0.026 0.974 30 H 0.074 0.926 31 H 0.338 0.662 32 H 0.066 0.934 33 H 0.023 0.977 34 H 0.034 0.966 35 H 0.064 0.936 36 H 0.039 0.961 37 H 0.039 0.961 38 H 0.054 0.946 39 H 0.043 0.957 40 H 0.015 0.985 41 H 0.012 0.988 42 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.540 10.892 -13.833 25.569 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.045 4.045 2 N -0.181 5.181 3 C -0.046 4.046 4 N -0.265 5.265 5 C -0.049 4.049 6 C -0.065 4.065 7 C -0.063 4.063 8 N -0.317 5.317 9 C -0.058 4.058 10 C -0.059 4.059 11 C -0.187 4.187 12 C -0.174 4.174 13 C -0.004 4.004 14 C -0.544 4.544 15 H 0.077 0.923 16 C -0.147 4.147 17 N -0.539 5.539 18 Si 0.716 3.284 19 H -0.203 1.203 20 H -0.215 1.215 21 H -0.204 1.204 22 N -0.147 5.147 23 H 0.097 0.903 24 H 0.110 0.890 25 H 0.111 0.889 26 H 0.235 0.765 27 H 0.119 0.881 28 H 0.102 0.898 29 H 0.045 0.955 30 H 0.093 0.907 31 H 0.157 0.843 32 H 0.085 0.915 33 H 0.041 0.959 34 H 0.053 0.947 35 H 0.083 0.917 36 H 0.059 0.941 37 H 0.058 0.942 38 H 0.073 0.927 39 H 0.062 0.938 40 H 0.033 0.967 41 H 0.031 0.969 42 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -18.110 10.866 -13.715 25.182 hybrid contribution -0.292 -0.899 0.485 1.063 sum -18.402 9.966 -13.230 24.759 Atomic orbital electron populations 1.21930 0.73830 1.04966 1.03746 1.50406 1.08076 1.04542 1.55027 1.26065 0.85924 0.95493 0.97102 1.70452 1.20372 1.11263 1.24416 1.24273 0.93649 0.89743 0.97231 1.19928 0.90147 0.97460 0.98927 1.21794 0.91439 0.98649 0.94370 1.60529 1.32160 1.23042 1.15946 1.22105 0.96898 0.99364 0.87392 1.20627 0.92784 0.93272 0.99178 1.21775 1.01619 0.97852 0.97425 1.21602 0.98152 0.99169 0.98437 1.19129 0.95960 0.96533 0.88823 1.21208 1.10181 1.30943 0.92079 0.92320 1.25021 0.97380 0.96537 0.95721 1.69966 1.40427 1.46281 0.97179 0.86721 0.83831 0.80982 0.76827 1.20304 1.21493 1.20378 1.78065 1.01697 1.07841 1.27059 0.90298 0.89025 0.88920 0.76526 0.88082 0.89762 0.95545 0.90725 0.84275 0.91520 0.95883 0.94716 0.91726 0.94144 0.94159 0.92735 0.93777 0.96659 0.96943 0.93152 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.40 11.53 59.85 0.69 1.09 16 2 N -0.39 -3.59 4.04 -69.44 -0.28 -3.87 16 3 C 0.25 2.20 12.66 -90.65 -1.15 1.06 16 4 N -0.54 -6.81 11.19 -11.98 -0.13 -6.94 16 5 C 0.23 3.08 7.39 -156.85 -1.16 1.92 16 6 C -0.02 -0.30 6.10 -27.89 -0.17 -0.47 16 7 C 0.07 0.94 5.67 -3.83 -0.02 0.92 16 8 N -0.68 -10.37 5.71 -113.78 -0.65 -11.02 16 9 C 0.07 1.28 4.65 -3.82 -0.02 1.26 16 10 C -0.06 -1.19 0.60 -154.51 -0.09 -1.28 16 11 C -0.13 -2.45 7.89 37.16 0.29 -2.16 16 12 C -0.12 -2.31 8.06 37.16 0.30 -2.01 16 13 C 0.03 0.85 4.04 -27.88 -0.11 0.74 16 14 C -0.51 -14.05 7.65 -34.44 -0.26 -14.31 16 15 H 0.06 1.58 5.68 -52.49 -0.30 1.28 16 16 C 0.05 1.55 5.46 -17.82 -0.10 1.45 16 17 N -0.90 -27.28 13.29 55.43 0.74 -26.54 16 18 Si 0.89 21.88 29.54 -169.99 -5.02 16.86 16 19 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16 20 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 21 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16 22 N -0.32 -4.12 12.70 32.42 0.41 -3.71 16 23 H 0.08 0.22 8.14 -51.93 -0.42 -0.21 16 24 H 0.09 0.39 8.14 -51.93 -0.42 -0.03 16 25 H 0.09 0.10 8.14 -51.93 -0.42 -0.32 16 26 H 0.22 0.77 8.06 -52.49 -0.42 0.35 16 27 H 0.10 1.22 8.14 -51.93 -0.42 0.80 16 28 H 0.08 0.94 8.14 -51.93 -0.42 0.51 16 29 H 0.03 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.07 1.10 8.14 -51.93 -0.42 0.67 16 31 H 0.34 4.81 6.77 -39.29 -0.27 4.54 16 32 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 33 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 34 H 0.03 0.55 6.57 -51.93 -0.34 0.21 16 35 H 0.06 1.32 6.61 -51.93 -0.34 0.98 16 36 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 38 H 0.05 1.15 6.62 -51.93 -0.34 0.80 16 39 H 0.04 0.78 7.60 -51.93 -0.39 0.39 16 40 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 41 H 0.01 0.34 8.14 -51.93 -0.42 -0.08 16 42 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 LS Contribution 341.56 15.07 5.15 5.15 Total: -1.00 -34.03 341.56 -8.63 -42.66 By element: Atomic # 1 Polarization: 6.24 SS G_CDS: -7.04 Total: -0.81 kcal Atomic # 6 Polarization: -9.99 SS G_CDS: -1.80 Total: -11.79 kcal Atomic # 7 Polarization: -52.16 SS G_CDS: 0.08 Total: -52.07 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.86 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -34.03 -8.63 -42.66 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000122961539.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.526 kcal (2) G-P(sol) polarization free energy of solvation -34.030 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.496 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.632 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.662 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.865 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds