Wall clock time and date at job start Mon Mar 30 2020 00:31:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.34433 * 126.82205 * 2 1 4 4 N 1.30827 * 108.08068 * 179.97438 * 3 2 1 5 5 C 1.33251 * 109.82607 * 0.02562 * 4 3 2 6 6 C 1.50697 * 125.52550 * 180.02562 * 5 4 3 7 7 C 1.52997 * 109.47466 * 90.02345 * 6 5 4 8 8 N 1.46899 * 109.47254 * 179.97438 * 7 6 5 9 9 C 1.46904 * 111.00029 * 179.97438 * 8 7 6 10 10 C 1.52997 * 109.46950 * 180.02562 * 9 8 7 11 11 C 1.53001 * 109.47312 * 300.00123 * 10 9 8 12 12 C 1.52997 * 109.47169 * 60.00159 * 10 9 8 13 13 C 1.53003 * 109.47071 * 180.02562 * 10 9 8 14 14 C 1.50704 * 109.47153 * 179.97438 * 13 10 9 15 15 H 1.07997 * 119.99780 * 359.97438 * 14 13 10 16 16 C 1.37871 * 119.99793 * 180.02562 * 14 13 10 17 17 N 1.31521 * 120.00052 * 0.02562 * 16 14 13 18 18 Si 1.86797 * 120.00014 * 179.97438 * 16 14 13 19 19 H 1.48505 * 109.47121 * 60.00049 * 18 16 14 20 20 H 1.48506 * 109.47165 * 179.97438 * 18 16 14 21 21 H 1.48500 * 109.47240 * 300.00130 * 18 16 14 22 22 N 1.30705 * 108.94593 * 0.26209 * 5 4 3 23 23 H 1.08997 * 109.46581 * 89.97588 * 1 2 3 24 24 H 1.08997 * 109.46836 * 209.97629 * 1 2 3 25 25 H 1.08998 * 109.47113 * 329.97798 * 1 2 3 26 26 H 1.08001 * 125.95928 * 359.97438 * 3 2 1 27 27 H 1.09002 * 109.47120 * 330.02098 * 6 5 4 28 28 H 1.08998 * 109.46862 * 210.02900 * 6 5 4 29 29 H 1.09002 * 109.47153 * 59.99773 * 7 6 5 30 30 H 1.09001 * 109.46832 * 299.99964 * 7 6 5 31 31 H 1.00902 * 111.00582 * 303.95797 * 8 7 6 32 32 H 1.08995 * 109.47167 * 300.00240 * 9 8 7 33 33 H 1.09003 * 109.46442 * 60.00214 * 9 8 7 34 34 H 1.09002 * 109.47029 * 60.00405 * 11 10 9 35 35 H 1.09000 * 109.47152 * 180.02562 * 11 10 9 36 36 H 1.08993 * 109.47356 * 300.00089 * 11 10 9 37 37 H 1.09005 * 109.46874 * 60.00300 * 12 10 9 38 38 H 1.09000 * 109.47103 * 179.97438 * 12 10 9 39 39 H 1.09002 * 109.47446 * 299.99763 * 12 10 9 40 40 H 1.08995 * 109.47051 * 300.00167 * 13 10 9 41 41 H 1.09003 * 109.46901 * 60.00330 * 13 10 9 42 42 H 0.97005 * 119.99618 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2707 1.0761 0.0000 4 7 3.5096 0.6558 0.0006 5 6 3.5349 -0.6765 0.0004 6 6 4.7777 -1.5287 0.0014 7 6 5.1966 -1.8179 1.4442 8 7 6.4078 -2.6492 1.4452 9 6 6.8407 -2.9472 2.8170 10 6 8.1021 -3.8122 2.7771 11 6 7.8008 -5.1198 2.0420 12 6 9.2138 -3.0593 2.0437 13 6 8.5527 -4.1231 4.2058 14 6 9.7948 -4.9756 4.1666 15 1 10.2199 -5.2669 3.2175 16 6 10.3876 -5.3845 5.3422 17 7 9.8689 -5.0310 6.4980 18 14 11.9268 -6.4418 5.2937 19 1 13.0067 -5.7116 4.5824 20 1 12.3641 -6.7434 6.6804 21 1 11.6336 -7.7104 4.5796 22 7 2.3069 -1.1242 -0.0060 23 1 -0.3632 0.0004 -1.0277 24 1 -0.3633 -0.8902 0.5135 25 1 -0.3633 0.8898 0.5142 26 1 1.9510 2.1077 -0.0004 27 1 5.5813 -1.0000 -0.5113 28 1 4.5746 -2.4679 -0.5132 29 1 4.3930 -2.3467 1.9569 30 1 5.3997 -0.8787 1.9587 31 1 6.2644 -3.4979 0.9185 32 1 7.0557 -2.0157 3.3405 33 1 6.0484 -3.4833 3.3395 34 1 7.4797 -4.8986 1.0241 35 1 8.6994 -5.7362 2.0140 36 1 7.0089 -5.6562 2.5644 37 1 9.4285 -2.1277 2.5675 38 1 10.1126 -3.6753 2.0156 39 1 8.8926 -2.8381 1.0258 40 1 8.7671 -3.1918 4.7299 41 1 7.7605 -4.6597 4.7279 42 1 10.2862 -5.3184 7.3251 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000122961539.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:31:45 Heat of formation + Delta-G solvation = 49.224832 kcal Electronic energy + Delta-G solvation = -19699.106716 eV Core-core repulsion = 16714.548999 eV Total energy + Delta-G solvation = -2984.557718 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.180 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -43.04137 -39.26317 -36.66692 -35.09809 -34.24802 -32.64065 -31.02068 -28.93603 -27.86517 -27.76779 -26.48270 -24.64011 -23.28774 -22.98459 -21.33827 -19.48201 -18.31439 -17.82408 -17.11893 -16.80030 -16.60531 -16.10065 -15.71320 -15.54352 -14.98729 -14.55752 -14.39259 -14.07124 -14.00091 -13.86073 -13.57716 -13.47309 -12.93534 -12.70497 -12.67775 -12.65233 -12.53081 -12.22415 -12.14277 -12.07057 -11.89011 -11.35252 -11.01411 -10.85985 -10.83006 -10.76325 -10.48569 -10.38333 -9.34649 -8.12416 -6.19589 0.64135 1.42000 1.44765 1.49118 1.51904 1.87732 2.45242 3.01848 3.21311 3.52492 3.59460 4.02743 4.06064 4.14500 4.23558 4.28617 4.42001 4.43032 4.49038 4.58898 4.69816 4.76548 4.82084 4.96557 4.98758 5.03200 5.11650 5.24155 5.25302 5.31889 5.41000 5.53818 5.56240 5.61117 5.67772 5.89409 5.94145 5.95932 6.02522 6.37857 6.52892 6.95386 7.12235 7.47611 8.99952 Molecular weight = 266.18amu Principal moments of inertia in cm(-1) A = 0.050480 B = 0.002788 C = 0.002755 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 554.542252 B =10041.456670 C =10162.203796 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.088 3.912 2 N -0.389 5.389 3 C 0.260 3.740 4 N -0.578 5.578 5 C 0.217 3.783 6 C -0.015 4.015 7 C 0.079 3.921 8 N -0.677 5.677 9 C 0.083 3.917 10 C -0.054 4.054 11 C -0.123 4.123 12 C -0.108 4.108 13 C 0.038 3.962 14 C -0.513 4.513 15 H 0.068 0.932 16 C -0.006 4.006 17 N -0.940 5.940 18 Si 0.958 3.042 19 H -0.268 1.268 20 H -0.288 1.288 21 H -0.267 1.267 22 N -0.352 5.352 23 H 0.094 0.906 24 H 0.086 0.914 25 H 0.129 0.871 26 H 0.267 0.733 27 H 0.101 0.899 28 H 0.094 0.906 29 H 0.020 0.980 30 H 0.062 0.938 31 H 0.348 0.652 32 H 0.055 0.945 33 H 0.016 0.984 34 H 0.070 0.930 35 H 0.048 0.952 36 H 0.035 0.965 37 H 0.029 0.971 38 H 0.040 0.960 39 H 0.070 0.930 40 H -0.017 1.017 41 H -0.017 1.017 42 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.350 11.354 -15.815 27.449 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 N -0.179 5.179 3 C -0.036 4.036 4 N -0.306 5.306 5 C -0.066 4.066 6 C -0.055 4.055 7 C -0.052 4.052 8 N -0.309 5.309 9 C -0.047 4.047 10 C -0.055 4.055 11 C -0.181 4.181 12 C -0.165 4.165 13 C 0.001 3.999 14 C -0.551 4.551 15 H 0.086 0.914 16 C -0.203 4.203 17 N -0.581 5.581 18 Si 0.783 3.217 19 H -0.193 1.193 20 H -0.214 1.214 21 H -0.192 1.192 22 N -0.182 5.182 23 H 0.113 0.887 24 H 0.104 0.896 25 H 0.147 0.853 26 H 0.282 0.718 27 H 0.120 0.880 28 H 0.113 0.887 29 H 0.038 0.962 30 H 0.081 0.919 31 H 0.168 0.832 32 H 0.073 0.927 33 H 0.034 0.966 34 H 0.089 0.911 35 H 0.067 0.933 36 H 0.054 0.946 37 H 0.048 0.952 38 H 0.059 0.941 39 H 0.089 0.911 40 H 0.002 0.998 41 H 0.001 0.999 42 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -18.953 11.327 -15.725 27.107 hybrid contribution -0.187 -0.954 1.102 1.469 sum -19.140 10.373 -14.624 26.226 Atomic orbital electron populations 1.22347 0.71023 1.06518 1.05284 1.50698 1.09561 1.03708 1.53980 1.26954 0.84852 0.97099 0.94722 1.70406 1.22803 1.11210 1.26224 1.24322 0.93876 0.90278 0.98125 1.19793 0.90266 0.98016 0.97445 1.21675 0.90382 0.97537 0.95621 1.60441 1.33107 1.23515 1.13870 1.21817 0.95647 0.98154 0.89057 1.20488 0.94098 0.94913 0.95980 1.21699 1.00815 0.96370 0.99165 1.21516 0.97220 0.98152 0.99613 1.19025 0.94774 0.94319 0.91809 1.21593 1.10563 1.30565 0.92414 0.91429 1.25953 1.00883 0.98073 0.95386 1.70117 1.42228 1.47863 0.97901 0.85604 0.79755 0.79415 0.76905 1.19273 1.21423 1.19188 1.77941 1.02130 1.10164 1.27951 0.88733 0.89558 0.85321 0.71769 0.88024 0.88739 0.96167 0.91927 0.83235 0.92686 0.96596 0.91093 0.93257 0.94576 0.95212 0.94099 0.91097 0.99844 0.99871 0.93192 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.49 11.53 127.77 1.47 1.96 16 2 N -0.39 -6.40 4.04 -373.62 -1.51 -7.91 16 3 C 0.26 3.95 12.66 180.36 2.28 6.24 16 4 N -0.58 -14.00 11.19 -191.80 -2.15 -16.15 16 5 C 0.22 5.57 7.39 138.63 1.03 6.60 16 6 C -0.02 -0.35 6.10 29.85 0.18 -0.17 16 7 C 0.08 2.12 5.67 86.30 0.49 2.61 16 8 N -0.68 -19.67 5.71 -513.89 -2.94 -22.61 16 9 C 0.08 2.99 4.65 86.30 0.40 3.39 16 10 C -0.05 -2.22 0.60 -52.18 -0.03 -2.26 16 11 C -0.12 -4.52 7.89 71.98 0.57 -3.96 16 12 C -0.11 -4.20 8.06 71.98 0.58 -3.62 16 13 C 0.04 2.04 4.04 29.85 0.12 2.16 16 14 C -0.51 -28.90 7.65 25.60 0.20 -28.70 16 15 H 0.07 3.62 5.68 -2.91 -0.02 3.61 16 16 C -0.01 -0.38 5.46 84.65 0.46 0.09 16 17 N -0.94 -58.54 13.29 21.45 0.28 -58.26 16 18 Si 0.96 45.08 29.54 68.60 2.03 47.11 16 19 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 20 H -0.29 -13.45 7.11 99.48 0.71 -12.74 16 21 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 22 N -0.35 -8.83 12.70 -51.34 -0.65 -9.48 16 23 H 0.09 0.26 8.14 -2.39 -0.02 0.24 16 24 H 0.09 0.60 8.14 -2.39 -0.02 0.58 16 25 H 0.13 -0.22 8.14 -2.39 -0.02 -0.24 16 26 H 0.27 0.85 8.06 -2.91 -0.02 0.82 16 27 H 0.10 2.35 8.14 -2.39 -0.02 2.33 16 28 H 0.09 1.98 8.14 -2.39 -0.02 1.96 16 29 H 0.02 0.58 8.14 -2.39 -0.02 0.56 16 30 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 31 H 0.35 9.10 6.77 -89.69 -0.61 8.49 16 32 H 0.05 2.11 8.14 -2.39 -0.02 2.09 16 33 H 0.02 0.60 8.14 -2.39 -0.02 0.58 16 34 H 0.07 2.08 6.57 -2.39 -0.02 2.06 16 35 H 0.05 1.95 6.61 -2.39 -0.02 1.94 16 36 H 0.04 1.33 8.14 -2.39 -0.02 1.31 16 37 H 0.03 1.18 8.14 -2.38 -0.02 1.16 16 38 H 0.04 1.68 6.62 -2.39 -0.02 1.66 16 39 H 0.07 2.37 7.60 -2.39 -0.02 2.35 16 40 H -0.02 -0.99 8.14 -2.39 -0.02 -1.01 16 41 H -0.02 -1.00 8.14 -2.39 -0.02 -1.02 16 42 H 0.26 15.32 8.31 -92.70 -0.77 14.55 16 Total: -1.00 -75.75 341.56 3.20 -72.54 By element: Atomic # 1 Polarization: 10.03 SS G_CDS: 0.38 Total: 10.41 kcal Atomic # 6 Polarization: -23.40 SS G_CDS: 7.75 Total: -15.65 kcal Atomic # 7 Polarization: -107.45 SS G_CDS: -6.96 Total: -114.41 kcal Atomic # 14 Polarization: 45.08 SS G_CDS: 2.03 Total: 47.11 kcal Total: -75.75 3.20 -72.54 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000122961539.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.766 kcal (2) G-P(sol) polarization free energy of solvation -75.746 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.020 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.204 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.541 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.225 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds