Wall clock time and date at job start Mon Mar 30 2020 00:45:47
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31628 * 1
3 3 Si 1.86798 * 120.00228 * 2 1
4 4 H 1.48495 * 109.46968 * 269.99934 * 3 2 1
5 5 H 1.48506 * 109.46918 * 29.99990 * 3 2 1
6 6 H 1.48499 * 109.46952 * 149.99768 * 3 2 1
7 7 C 1.38816 * 119.99534 * 179.97438 * 2 1 3
8 8 H 1.08001 * 119.99904 * 196.99924 * 7 2 1
9 9 N 1.36941 * 120.00243 * 17.00204 * 7 2 1
10 10 C 1.47072 * 120.88258 * 206.57541 * 9 7 2
11 11 C 1.53233 * 108.52281 * 231.20892 * 10 9 7
12 12 N 1.46898 * 109.34040 * 306.16726 * 11 10 9
13 13 C 1.46903 * 111.00336 * 187.25171 * 12 11 10
14 14 C 1.52999 * 109.47059 * 169.99835 * 13 12 11
15 15 C 1.45547 * 108.89269 * 175.00027 * 14 13 12
16 16 C 1.54236 * 112.40383 * 182.69417 * 15 14 13
17 17 C 1.50476 * 108.52085 * 280.01046 * 16 15 14
18 18 C 1.54068 * 112.49664 * 94.15435 * 17 16 15
19 19 C 1.54066 * 112.81704 * 318.28471 * 18 17 16
20 20 C 1.50477 * 112.50001 * 318.28553 * 19 18 17
21 21 C 1.46903 * 111.26703 * 63.10377 * 12 11 10
22 22 C 1.47080 * 120.87910 * 26.60284 * 9 7 2
23 23 H 0.96994 * 119.99481 * 359.97438 * 1 2 3
24 24 H 1.08997 * 109.63049 * 111.49366 * 10 9 7
25 25 H 1.09008 * 109.78895 * 351.00940 * 10 9 7
26 26 H 1.09008 * 109.49552 * 186.21247 * 11 10 9
27 27 H 1.08997 * 109.51640 * 66.14298 * 11 10 9
28 28 H 1.09003 * 109.46691 * 50.00101 * 13 12 11
29 29 H 1.08997 * 109.47296 * 290.00328 * 13 12 11
30 30 H 1.08997 * 108.78729 * 56.45001 * 14 13 12
31 31 H 1.09001 * 108.89367 * 61.93741 * 15 14 13
32 32 H 1.08998 * 108.81846 * 303.39508 * 15 14 13
33 33 H 1.08992 * 109.63398 * 39.72160 * 16 15 14
34 34 H 1.09004 * 109.63054 * 160.30567 * 16 15 14
35 35 H 1.08998 * 108.88179 * 214.93098 * 17 16 15
36 36 H 1.08999 * 108.87660 * 333.37916 * 17 16 15
37 37 H 1.09005 * 108.81245 * 197.42686 * 18 17 16
38 38 H 1.08992 * 108.72498 * 79.08689 * 18 17 16
39 39 H 1.08999 * 108.87743 * 197.50561 * 19 18 17
40 40 H 1.08999 * 108.87442 * 79.06193 * 19 18 17
41 41 H 1.09007 * 109.62313 * 334.43571 * 20 19 18
42 42 H 1.08998 * 109.62730 * 213.86326 * 20 19 18
43 43 H 1.08998 * 109.48924 * 56.85877 * 21 12 11
44 44 H 1.09002 * 109.49375 * 176.93215 * 21 12 11
45 45 H 1.09003 * 109.62524 * 248.50235 * 22 9 7
46 46 H 1.09000 * 109.63459 * 9.07918 * 22 9 7
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3163 0.0000 0.0000
3 14 2.2503 1.6177 0.0000
4 1 2.4978 2.0463 -1.4000
5 1 1.4478 2.6526 0.7001
6 1 3.5478 1.4400 0.7001
7 6 2.0103 -1.2022 0.0005
8 1 3.0549 -1.2226 0.2740
9 7 1.3704 -2.3624 -0.3457
10 6 1.8309 -3.6610 0.1688
11 6 2.0029 -4.6199 -1.0140
12 7 0.7556 -4.6657 -1.7886
13 6 0.8197 -5.7006 -2.8292
14 6 -0.5676 -5.8907 -3.4456
15 6 -0.4668 -6.8300 -4.5528
16 6 -1.8132 -7.0310 -5.2777
17 6 -2.6487 -7.9923 -4.4763
18 6 -3.6053 -7.2741 -3.5052
19 6 -2.9460 -6.0778 -2.7926
20 6 -1.5389 -6.3754 -2.3499
21 6 0.4407 -3.3537 -2.3696
22 6 0.2048 -2.3429 -1.2425
23 1 -0.4849 0.8400 0.0004
24 1 1.0920 -4.0632 0.8618
25 1 2.7848 -3.5375 0.6817
26 1 2.2371 -5.6176 -0.6424
27 1 2.8145 -4.2695 -1.6517
28 1 1.1529 -6.6398 -2.3875
29 1 1.5226 -5.3939 -3.6038
30 1 -0.9166 -4.9312 -3.8274
31 1 -0.1250 -7.7916 -4.1698
32 1 0.2660 -6.4544 -5.2669
33 1 -2.3314 -6.0756 -5.3593
34 1 -1.6361 -7.4408 -6.2721
35 1 -3.2355 -8.6049 -5.1607
36 1 -1.9870 -8.6419 -3.9035
37 1 -3.9443 -7.9875 -2.7540
38 1 -4.4693 -6.9170 -4.0653
39 1 -3.5425 -5.8154 -1.9189
40 1 -2.9288 -5.2273 -3.4740
41 1 -1.4203 -7.4491 -2.2043
42 1 -1.3299 -5.8513 -1.4173
43 1 1.2739 -3.0206 -2.9884
44 1 -0.4580 -3.4330 -2.9812
45 1 -0.6906 -2.6184 -0.6851
46 1 0.0841 -1.3452 -1.6646
RHF calculation, no. of doubly occupied orbitals= 52
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000129922042.mol2 46
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 00:45:47
Heat of formation + Delta-G solvation = 7.429529 kcal
Electronic energy + Delta-G solvation = -21644.802451 eV
Core-core repulsion = 18761.972697 eV
Total energy + Delta-G solvation = -2882.829755 eV
No. of doubly occupied orbitals = 52
Molecular weight
(most abundant/longest-lived isotopes) = 266.205 amu
Computer time = 0.59 seconds
Orbital eigenvalues (eV)
-39.45141 -37.58793 -34.64545 -32.70068 -31.98709 -30.82514 -29.85506 -27.32195
-25.27581 -24.53619 -23.12114 -22.57411 -21.62789 -19.91034 -19.27830 -18.87086
-16.70786 -15.76332 -15.27188 -14.89903 -14.61470 -14.53749 -14.13474 -13.63632
-13.50265 -13.27782 -12.98128 -12.86660 -12.74053 -12.52348 -12.04337 -11.99316
-11.44806 -11.37750 -11.05192 -10.76333 -10.70201 -10.59019 -10.42465 -10.33699
-10.24334 -10.21472 -10.12349 -9.96297 -9.94736 -9.65460 -9.47009 -8.46484
-7.69013 -6.61729 -5.74254 -3.15139 3.39897 3.46598 3.47903 4.40408
4.53358 4.65206 4.80405 4.87371 5.13415 5.21589 5.28395 5.40434
5.43009 5.45047 5.50032 5.52663 5.72516 5.76253 5.83734 5.90279
6.00667 6.03482 6.03979 6.08717 6.16994 6.19395 6.21180 6.26712
6.29441 6.34946 6.40319 6.42170 6.48539 6.57963 6.70873 6.75440
6.82156 6.99256 7.32191 7.70223 7.73519 7.78827 7.88643 8.47763
9.25606 9.89206 10.47962 11.34460
Molecular weight = 266.21amu
Principal moments of inertia in cm(-1)
A = 0.032482 B = 0.004348 C = 0.004158
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 861.806969 B = 6437.467255 C = 6732.410803
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.903 5.903
2 C 0.001 3.999
3 Si 0.902 3.098
4 H -0.288 1.288
5 H -0.291 1.291
6 H -0.280 1.280
7 C -0.251 4.251
8 H 0.065 0.935
9 N -0.595 5.595
10 C 0.149 3.851
11 C 0.045 3.955
12 N -0.528 5.528
13 C 0.057 3.943
14 C -0.083 4.083
15 C -0.110 4.110
16 C -0.115 4.115
17 C -0.116 4.116
18 C -0.116 4.116
19 C -0.118 4.118
20 C -0.103 4.103
21 C 0.034 3.966
22 C 0.179 3.821
23 H 0.253 0.747
24 H 0.025 0.975
25 H 0.053 0.947
26 H 0.059 0.941
27 H 0.025 0.975
28 H 0.064 0.936
29 H 0.022 0.978
30 H 0.069 0.931
31 H 0.057 0.943
32 H 0.053 0.947
33 H 0.065 0.935
34 H 0.057 0.943
35 H 0.052 0.948
36 H 0.059 0.941
37 H 0.054 0.946
38 H 0.053 0.947
39 H 0.056 0.944
40 H 0.058 0.942
41 H 0.054 0.946
42 H 0.085 0.915
43 H 0.021 0.979
44 H 0.062 0.938
45 H 0.025 0.975
46 H 0.086 0.914
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -3.666 -14.951 -8.884 17.774
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.548 5.548
2 C -0.197 4.197
3 Si 0.732 3.268
4 H -0.216 1.216
5 H -0.218 1.218
6 H -0.205 1.205
7 C -0.381 4.381
8 H 0.083 0.917
9 N -0.319 5.319
10 C 0.023 3.977
11 C -0.085 4.085
12 N -0.253 5.253
13 C -0.072 4.072
14 C -0.102 4.102
15 C -0.148 4.148
16 C -0.153 4.153
17 C -0.154 4.154
18 C -0.154 4.154
19 C -0.155 4.155
20 C -0.141 4.141
21 C -0.095 4.095
22 C 0.053 3.947
23 H 0.063 0.937
24 H 0.042 0.958
25 H 0.072 0.928
26 H 0.078 0.922
27 H 0.043 0.957
28 H 0.082 0.918
29 H 0.040 0.960
30 H 0.087 0.913
31 H 0.076 0.924
32 H 0.072 0.928
33 H 0.084 0.916
34 H 0.076 0.924
35 H 0.070 0.930
36 H 0.078 0.922
37 H 0.073 0.927
38 H 0.072 0.928
39 H 0.075 0.925
40 H 0.077 0.923
41 H 0.072 0.928
42 H 0.103 0.897
43 H 0.039 0.961
44 H 0.080 0.920
45 H 0.043 0.957
46 H 0.104 0.896
Dipole moment (debyes) X Y Z Total
from point charges -4.137 -14.908 -8.527 17.666
hybrid contribution 1.093 1.069 -0.637 1.657
sum -3.044 -13.839 -9.164 16.875
Atomic orbital electron populations
1.70038 1.05176 1.25372 1.54227 1.25010 0.95295 0.98273 1.01143
0.86293 0.79096 0.83791 0.77627 1.21552 1.21752 1.20498 1.19218
0.92571 0.84869 1.41421 0.91705 1.44115 1.34173 1.01217 1.52379
1.20956 0.97618 0.86511 0.92639 1.22596 0.89816 0.99179 0.96905
1.61927 1.33800 1.05757 1.23795 1.22218 0.95837 0.95708 0.93409
1.20107 0.95648 0.99271 0.95176 1.20508 0.97069 0.99879 0.97366
1.21298 0.95986 1.00039 0.97974 1.21323 0.98195 0.98140 0.97744
1.21924 0.97929 0.97606 0.97915 1.21331 0.96866 0.97576 0.99759
1.21277 0.93003 1.00476 0.99316 1.22919 0.98600 0.89460 0.98481
1.20845 0.88869 0.96535 0.88436 0.93681 0.95756 0.92821 0.92240
0.95708 0.91751 0.95993 0.91276 0.92400 0.92783 0.91619 0.92431
0.92968 0.92184 0.92690 0.92834 0.92477 0.92333 0.92772 0.89676
0.96093 0.91950 0.95656 0.89577
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 17.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.90 -26.58 11.15 55.49 0.62 -25.96 16
2 C 0.00 0.03 4.94 -17.43 -0.09 -0.05 16
3 Si 0.90 21.97 29.59 -169.99 -5.03 16.94 16
4 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16
5 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16
6 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16
7 C -0.25 -7.05 9.63 -15.06 -0.15 -7.19 16
8 H 0.07 1.79 7.88 -52.49 -0.41 1.37 16
9 N -0.60 -15.41 3.04 -172.02 -0.52 -15.93 16
10 C 0.15 3.26 6.69 -3.61 -0.02 3.23 16
11 C 0.04 0.82 5.62 -3.71 -0.02 0.80 16
12 N -0.53 -9.45 3.68 -234.32 -0.86 -10.32 16
13 C 0.06 0.83 4.27 -3.82 -0.02 0.81 16
14 C -0.08 -1.07 1.62 -93.49 -0.15 -1.22 16
15 C -0.11 -1.19 4.44 -29.60 -0.13 -1.32 16
16 C -0.12 -1.13 5.61 -27.35 -0.15 -1.28 16
17 C -0.12 -1.09 5.31 -27.43 -0.15 -1.24 16
18 C -0.12 -1.16 5.85 -25.62 -0.15 -1.31 16
19 C -0.12 -1.40 5.31 -27.43 -0.15 -1.54 16
20 C -0.10 -1.33 4.95 -27.35 -0.14 -1.46 16
21 C 0.03 0.69 5.46 -3.70 -0.02 0.67 16
22 C 0.18 4.41 5.42 -3.61 -0.02 4.39 16
23 H 0.25 7.19 8.31 -40.82 -0.34 6.85 16
24 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16
25 H 0.05 1.12 7.96 -51.92 -0.41 0.71 16
26 H 0.06 0.95 7.99 -51.92 -0.41 0.53 16
27 H 0.02 0.48 8.14 -51.93 -0.42 0.05 16
28 H 0.06 0.88 7.97 -51.93 -0.41 0.47 16
29 H 0.02 0.33 8.05 -51.93 -0.42 -0.09 16
30 H 0.07 0.98 5.53 -51.93 -0.29 0.70 16
31 H 0.06 0.60 7.47 -51.93 -0.39 0.21 16
32 H 0.05 0.58 8.05 -51.93 -0.42 0.16 16
33 H 0.07 0.69 6.98 -51.93 -0.36 0.32 16
34 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16
35 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16
36 H 0.06 0.57 6.63 -51.93 -0.34 0.23 16
37 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16
38 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16
39 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16
40 H 0.06 0.73 6.63 -51.93 -0.34 0.38 16
41 H 0.05 0.65 6.98 -51.93 -0.36 0.29 16
42 H 0.08 1.32 7.19 -51.93 -0.37 0.95 16
43 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16
44 H 0.06 1.14 6.08 -51.93 -0.32 0.83 16
45 H 0.03 0.67 8.14 -51.93 -0.42 0.24 16
46 H 0.09 2.35 6.12 -51.93 -0.32 2.03 16
LS Contribution 333.01 15.07 5.02 5.02
Total: -1.00 -28.99 333.01 -10.65 -39.64
By element:
Atomic # 1 Polarization: 5.86 SS G_CDS: -8.53 Total: -2.67 kcal
Atomic # 6 Polarization: -5.38 SS G_CDS: -1.35 Total: -6.72 kcal
Atomic # 7 Polarization: -51.44 SS G_CDS: -0.77 Total: -52.21 kcal
Atomic # 14 Polarization: 21.97 SS G_CDS: -5.03 Total: 16.94 kcal
Total LS contribution 5.02 Total: 5.02 kcal
Total: -28.99 -10.65 -39.64 kcal
The number of atoms in the molecule is 46
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000129922042.mol2 46
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 47.068 kcal
(2) G-P(sol) polarization free energy of solvation -28.988 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.080 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.650 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.638 kcal
(6) G-S(sol) free energy of system = (1) + (5) 7.430 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.59 seconds