Wall clock time and date at job start Mon Mar 30 2020 00:45:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31628 * 1 3 3 Si 1.86798 * 120.00228 * 2 1 4 4 H 1.48495 * 109.46968 * 269.99934 * 3 2 1 5 5 H 1.48506 * 109.46918 * 29.99990 * 3 2 1 6 6 H 1.48499 * 109.46952 * 149.99768 * 3 2 1 7 7 C 1.38816 * 119.99534 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99904 * 196.99924 * 7 2 1 9 9 N 1.36941 * 120.00243 * 17.00204 * 7 2 1 10 10 C 1.47072 * 120.88258 * 206.57541 * 9 7 2 11 11 C 1.53233 * 108.52281 * 231.20892 * 10 9 7 12 12 N 1.46898 * 109.34040 * 306.16726 * 11 10 9 13 13 C 1.46903 * 111.00336 * 187.25171 * 12 11 10 14 14 C 1.52999 * 109.47059 * 169.99835 * 13 12 11 15 15 C 1.45547 * 108.89269 * 175.00027 * 14 13 12 16 16 C 1.54236 * 112.40383 * 182.69417 * 15 14 13 17 17 C 1.50476 * 108.52085 * 280.01046 * 16 15 14 18 18 C 1.54068 * 112.49664 * 94.15435 * 17 16 15 19 19 C 1.54066 * 112.81704 * 318.28471 * 18 17 16 20 20 C 1.50477 * 112.50001 * 318.28553 * 19 18 17 21 21 C 1.46903 * 111.26703 * 63.10377 * 12 11 10 22 22 C 1.47080 * 120.87910 * 26.60284 * 9 7 2 23 23 H 0.96994 * 119.99481 * 359.97438 * 1 2 3 24 24 H 1.08997 * 109.63049 * 111.49366 * 10 9 7 25 25 H 1.09008 * 109.78895 * 351.00940 * 10 9 7 26 26 H 1.09008 * 109.49552 * 186.21247 * 11 10 9 27 27 H 1.08997 * 109.51640 * 66.14298 * 11 10 9 28 28 H 1.09003 * 109.46691 * 50.00101 * 13 12 11 29 29 H 1.08997 * 109.47296 * 290.00328 * 13 12 11 30 30 H 1.08997 * 108.78729 * 56.45001 * 14 13 12 31 31 H 1.09001 * 108.89367 * 61.93741 * 15 14 13 32 32 H 1.08998 * 108.81846 * 303.39508 * 15 14 13 33 33 H 1.08992 * 109.63398 * 39.72160 * 16 15 14 34 34 H 1.09004 * 109.63054 * 160.30567 * 16 15 14 35 35 H 1.08998 * 108.88179 * 214.93098 * 17 16 15 36 36 H 1.08999 * 108.87660 * 333.37916 * 17 16 15 37 37 H 1.09005 * 108.81245 * 197.42686 * 18 17 16 38 38 H 1.08992 * 108.72498 * 79.08689 * 18 17 16 39 39 H 1.08999 * 108.87743 * 197.50561 * 19 18 17 40 40 H 1.08999 * 108.87442 * 79.06193 * 19 18 17 41 41 H 1.09007 * 109.62313 * 334.43571 * 20 19 18 42 42 H 1.08998 * 109.62730 * 213.86326 * 20 19 18 43 43 H 1.08998 * 109.48924 * 56.85877 * 21 12 11 44 44 H 1.09002 * 109.49375 * 176.93215 * 21 12 11 45 45 H 1.09003 * 109.62524 * 248.50235 * 22 9 7 46 46 H 1.09000 * 109.63459 * 9.07918 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0463 -1.4000 5 1 1.4478 2.6526 0.7001 6 1 3.5478 1.4400 0.7001 7 6 2.0103 -1.2022 0.0005 8 1 3.0549 -1.2226 0.2740 9 7 1.3704 -2.3624 -0.3457 10 6 1.8309 -3.6610 0.1688 11 6 2.0029 -4.6199 -1.0140 12 7 0.7556 -4.6657 -1.7886 13 6 0.8197 -5.7006 -2.8292 14 6 -0.5676 -5.8907 -3.4456 15 6 -0.4668 -6.8300 -4.5528 16 6 -1.8132 -7.0310 -5.2777 17 6 -2.6487 -7.9923 -4.4763 18 6 -3.6053 -7.2741 -3.5052 19 6 -2.9460 -6.0778 -2.7926 20 6 -1.5389 -6.3754 -2.3499 21 6 0.4407 -3.3537 -2.3696 22 6 0.2048 -2.3429 -1.2425 23 1 -0.4849 0.8400 0.0004 24 1 1.0920 -4.0632 0.8618 25 1 2.7848 -3.5375 0.6817 26 1 2.2371 -5.6176 -0.6424 27 1 2.8145 -4.2695 -1.6517 28 1 1.1529 -6.6398 -2.3875 29 1 1.5226 -5.3939 -3.6038 30 1 -0.9166 -4.9312 -3.8274 31 1 -0.1250 -7.7916 -4.1698 32 1 0.2660 -6.4544 -5.2669 33 1 -2.3314 -6.0756 -5.3593 34 1 -1.6361 -7.4408 -6.2721 35 1 -3.2355 -8.6049 -5.1607 36 1 -1.9870 -8.6419 -3.9035 37 1 -3.9443 -7.9875 -2.7540 38 1 -4.4693 -6.9170 -4.0653 39 1 -3.5425 -5.8154 -1.9189 40 1 -2.9288 -5.2273 -3.4740 41 1 -1.4203 -7.4491 -2.2043 42 1 -1.3299 -5.8513 -1.4173 43 1 1.2739 -3.0206 -2.9884 44 1 -0.4580 -3.4330 -2.9812 45 1 -0.6906 -2.6184 -0.6851 46 1 0.0841 -1.3452 -1.6646 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000129922042.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:45:47 Heat of formation + Delta-G solvation = 7.429529 kcal Electronic energy + Delta-G solvation = -21644.802451 eV Core-core repulsion = 18761.972697 eV Total energy + Delta-G solvation = -2882.829755 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 266.205 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -39.45141 -37.58793 -34.64545 -32.70068 -31.98709 -30.82514 -29.85506 -27.32195 -25.27581 -24.53619 -23.12114 -22.57411 -21.62789 -19.91034 -19.27830 -18.87086 -16.70786 -15.76332 -15.27188 -14.89903 -14.61470 -14.53749 -14.13474 -13.63632 -13.50265 -13.27782 -12.98128 -12.86660 -12.74053 -12.52348 -12.04337 -11.99316 -11.44806 -11.37750 -11.05192 -10.76333 -10.70201 -10.59019 -10.42465 -10.33699 -10.24334 -10.21472 -10.12349 -9.96297 -9.94736 -9.65460 -9.47009 -8.46484 -7.69013 -6.61729 -5.74254 -3.15139 3.39897 3.46598 3.47903 4.40408 4.53358 4.65206 4.80405 4.87371 5.13415 5.21589 5.28395 5.40434 5.43009 5.45047 5.50032 5.52663 5.72516 5.76253 5.83734 5.90279 6.00667 6.03482 6.03979 6.08717 6.16994 6.19395 6.21180 6.26712 6.29441 6.34946 6.40319 6.42170 6.48539 6.57963 6.70873 6.75440 6.82156 6.99256 7.32191 7.70223 7.73519 7.78827 7.88643 8.47763 9.25606 9.89206 10.47962 11.34460 Molecular weight = 266.21amu Principal moments of inertia in cm(-1) A = 0.032482 B = 0.004348 C = 0.004158 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 861.806969 B = 6437.467255 C = 6732.410803 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.001 3.999 3 Si 0.902 3.098 4 H -0.288 1.288 5 H -0.291 1.291 6 H -0.280 1.280 7 C -0.251 4.251 8 H 0.065 0.935 9 N -0.595 5.595 10 C 0.149 3.851 11 C 0.045 3.955 12 N -0.528 5.528 13 C 0.057 3.943 14 C -0.083 4.083 15 C -0.110 4.110 16 C -0.115 4.115 17 C -0.116 4.116 18 C -0.116 4.116 19 C -0.118 4.118 20 C -0.103 4.103 21 C 0.034 3.966 22 C 0.179 3.821 23 H 0.253 0.747 24 H 0.025 0.975 25 H 0.053 0.947 26 H 0.059 0.941 27 H 0.025 0.975 28 H 0.064 0.936 29 H 0.022 0.978 30 H 0.069 0.931 31 H 0.057 0.943 32 H 0.053 0.947 33 H 0.065 0.935 34 H 0.057 0.943 35 H 0.052 0.948 36 H 0.059 0.941 37 H 0.054 0.946 38 H 0.053 0.947 39 H 0.056 0.944 40 H 0.058 0.942 41 H 0.054 0.946 42 H 0.085 0.915 43 H 0.021 0.979 44 H 0.062 0.938 45 H 0.025 0.975 46 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.666 -14.951 -8.884 17.774 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.197 4.197 3 Si 0.732 3.268 4 H -0.216 1.216 5 H -0.218 1.218 6 H -0.205 1.205 7 C -0.381 4.381 8 H 0.083 0.917 9 N -0.319 5.319 10 C 0.023 3.977 11 C -0.085 4.085 12 N -0.253 5.253 13 C -0.072 4.072 14 C -0.102 4.102 15 C -0.148 4.148 16 C -0.153 4.153 17 C -0.154 4.154 18 C -0.154 4.154 19 C -0.155 4.155 20 C -0.141 4.141 21 C -0.095 4.095 22 C 0.053 3.947 23 H 0.063 0.937 24 H 0.042 0.958 25 H 0.072 0.928 26 H 0.078 0.922 27 H 0.043 0.957 28 H 0.082 0.918 29 H 0.040 0.960 30 H 0.087 0.913 31 H 0.076 0.924 32 H 0.072 0.928 33 H 0.084 0.916 34 H 0.076 0.924 35 H 0.070 0.930 36 H 0.078 0.922 37 H 0.073 0.927 38 H 0.072 0.928 39 H 0.075 0.925 40 H 0.077 0.923 41 H 0.072 0.928 42 H 0.103 0.897 43 H 0.039 0.961 44 H 0.080 0.920 45 H 0.043 0.957 46 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -4.137 -14.908 -8.527 17.666 hybrid contribution 1.093 1.069 -0.637 1.657 sum -3.044 -13.839 -9.164 16.875 Atomic orbital electron populations 1.70038 1.05176 1.25372 1.54227 1.25010 0.95295 0.98273 1.01143 0.86293 0.79096 0.83791 0.77627 1.21552 1.21752 1.20498 1.19218 0.92571 0.84869 1.41421 0.91705 1.44115 1.34173 1.01217 1.52379 1.20956 0.97618 0.86511 0.92639 1.22596 0.89816 0.99179 0.96905 1.61927 1.33800 1.05757 1.23795 1.22218 0.95837 0.95708 0.93409 1.20107 0.95648 0.99271 0.95176 1.20508 0.97069 0.99879 0.97366 1.21298 0.95986 1.00039 0.97974 1.21323 0.98195 0.98140 0.97744 1.21924 0.97929 0.97606 0.97915 1.21331 0.96866 0.97576 0.99759 1.21277 0.93003 1.00476 0.99316 1.22919 0.98600 0.89460 0.98481 1.20845 0.88869 0.96535 0.88436 0.93681 0.95756 0.92821 0.92240 0.95708 0.91751 0.95993 0.91276 0.92400 0.92783 0.91619 0.92431 0.92968 0.92184 0.92690 0.92834 0.92477 0.92333 0.92772 0.89676 0.96093 0.91950 0.95656 0.89577 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.58 11.15 55.49 0.62 -25.96 16 2 C 0.00 0.03 4.94 -17.43 -0.09 -0.05 16 3 Si 0.90 21.97 29.59 -169.99 -5.03 16.94 16 4 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 5 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 6 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 7 C -0.25 -7.05 9.63 -15.06 -0.15 -7.19 16 8 H 0.07 1.79 7.88 -52.49 -0.41 1.37 16 9 N -0.60 -15.41 3.04 -172.02 -0.52 -15.93 16 10 C 0.15 3.26 6.69 -3.61 -0.02 3.23 16 11 C 0.04 0.82 5.62 -3.71 -0.02 0.80 16 12 N -0.53 -9.45 3.68 -234.32 -0.86 -10.32 16 13 C 0.06 0.83 4.27 -3.82 -0.02 0.81 16 14 C -0.08 -1.07 1.62 -93.49 -0.15 -1.22 16 15 C -0.11 -1.19 4.44 -29.60 -0.13 -1.32 16 16 C -0.12 -1.13 5.61 -27.35 -0.15 -1.28 16 17 C -0.12 -1.09 5.31 -27.43 -0.15 -1.24 16 18 C -0.12 -1.16 5.85 -25.62 -0.15 -1.31 16 19 C -0.12 -1.40 5.31 -27.43 -0.15 -1.54 16 20 C -0.10 -1.33 4.95 -27.35 -0.14 -1.46 16 21 C 0.03 0.69 5.46 -3.70 -0.02 0.67 16 22 C 0.18 4.41 5.42 -3.61 -0.02 4.39 16 23 H 0.25 7.19 8.31 -40.82 -0.34 6.85 16 24 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 25 H 0.05 1.12 7.96 -51.92 -0.41 0.71 16 26 H 0.06 0.95 7.99 -51.92 -0.41 0.53 16 27 H 0.02 0.48 8.14 -51.93 -0.42 0.05 16 28 H 0.06 0.88 7.97 -51.93 -0.41 0.47 16 29 H 0.02 0.33 8.05 -51.93 -0.42 -0.09 16 30 H 0.07 0.98 5.53 -51.93 -0.29 0.70 16 31 H 0.06 0.60 7.47 -51.93 -0.39 0.21 16 32 H 0.05 0.58 8.05 -51.93 -0.42 0.16 16 33 H 0.07 0.69 6.98 -51.93 -0.36 0.32 16 34 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 36 H 0.06 0.57 6.63 -51.93 -0.34 0.23 16 37 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 38 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 39 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 40 H 0.06 0.73 6.63 -51.93 -0.34 0.38 16 41 H 0.05 0.65 6.98 -51.93 -0.36 0.29 16 42 H 0.08 1.32 7.19 -51.93 -0.37 0.95 16 43 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 44 H 0.06 1.14 6.08 -51.93 -0.32 0.83 16 45 H 0.03 0.67 8.14 -51.93 -0.42 0.24 16 46 H 0.09 2.35 6.12 -51.93 -0.32 2.03 16 LS Contribution 333.01 15.07 5.02 5.02 Total: -1.00 -28.99 333.01 -10.65 -39.64 By element: Atomic # 1 Polarization: 5.86 SS G_CDS: -8.53 Total: -2.67 kcal Atomic # 6 Polarization: -5.38 SS G_CDS: -1.35 Total: -6.72 kcal Atomic # 7 Polarization: -51.44 SS G_CDS: -0.77 Total: -52.21 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.03 Total: 16.94 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -28.99 -10.65 -39.64 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000129922042.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.068 kcal (2) G-P(sol) polarization free energy of solvation -28.988 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.080 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.650 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.638 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.430 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds