Wall clock time and date at job start Mon Mar 30 2020 00:45:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31628 * 1 3 3 Si 1.86798 * 120.00228 * 2 1 4 4 H 1.48495 * 109.46968 * 269.99934 * 3 2 1 5 5 H 1.48506 * 109.46918 * 29.99990 * 3 2 1 6 6 H 1.48499 * 109.46952 * 149.99768 * 3 2 1 7 7 C 1.38816 * 119.99534 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99904 * 196.99924 * 7 2 1 9 9 N 1.36941 * 120.00243 * 17.00204 * 7 2 1 10 10 C 1.47072 * 120.88258 * 206.57541 * 9 7 2 11 11 C 1.53233 * 108.52281 * 231.20892 * 10 9 7 12 12 N 1.46898 * 109.34040 * 306.16726 * 11 10 9 13 13 C 1.46903 * 111.00336 * 187.25171 * 12 11 10 14 14 C 1.52999 * 109.47059 * 169.99835 * 13 12 11 15 15 C 1.45547 * 108.89269 * 175.00027 * 14 13 12 16 16 C 1.54236 * 112.40383 * 182.69417 * 15 14 13 17 17 C 1.50476 * 108.52085 * 280.01046 * 16 15 14 18 18 C 1.54068 * 112.49664 * 94.15435 * 17 16 15 19 19 C 1.54066 * 112.81704 * 318.28471 * 18 17 16 20 20 C 1.50477 * 112.50001 * 318.28553 * 19 18 17 21 21 C 1.46903 * 111.26703 * 63.10377 * 12 11 10 22 22 C 1.47080 * 120.87910 * 26.60284 * 9 7 2 23 23 H 0.96994 * 119.99481 * 359.97438 * 1 2 3 24 24 H 1.08997 * 109.63049 * 111.49366 * 10 9 7 25 25 H 1.09008 * 109.78895 * 351.00940 * 10 9 7 26 26 H 1.09008 * 109.49552 * 186.21247 * 11 10 9 27 27 H 1.08997 * 109.51640 * 66.14298 * 11 10 9 28 28 H 1.09003 * 109.46691 * 50.00101 * 13 12 11 29 29 H 1.08997 * 109.47296 * 290.00328 * 13 12 11 30 30 H 1.08997 * 108.78729 * 56.45001 * 14 13 12 31 31 H 1.09001 * 108.89367 * 61.93741 * 15 14 13 32 32 H 1.08998 * 108.81846 * 303.39508 * 15 14 13 33 33 H 1.08992 * 109.63398 * 39.72160 * 16 15 14 34 34 H 1.09004 * 109.63054 * 160.30567 * 16 15 14 35 35 H 1.08998 * 108.88179 * 214.93098 * 17 16 15 36 36 H 1.08999 * 108.87660 * 333.37916 * 17 16 15 37 37 H 1.09005 * 108.81245 * 197.42686 * 18 17 16 38 38 H 1.08992 * 108.72498 * 79.08689 * 18 17 16 39 39 H 1.08999 * 108.87743 * 197.50561 * 19 18 17 40 40 H 1.08999 * 108.87442 * 79.06193 * 19 18 17 41 41 H 1.09007 * 109.62313 * 334.43571 * 20 19 18 42 42 H 1.08998 * 109.62730 * 213.86326 * 20 19 18 43 43 H 1.08998 * 109.48924 * 56.85877 * 21 12 11 44 44 H 1.09002 * 109.49375 * 176.93215 * 21 12 11 45 45 H 1.09003 * 109.62524 * 248.50235 * 22 9 7 46 46 H 1.09000 * 109.63459 * 9.07918 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0463 -1.4000 5 1 1.4478 2.6526 0.7001 6 1 3.5478 1.4400 0.7001 7 6 2.0103 -1.2022 0.0005 8 1 3.0549 -1.2226 0.2740 9 7 1.3704 -2.3624 -0.3457 10 6 1.8309 -3.6610 0.1688 11 6 2.0029 -4.6199 -1.0140 12 7 0.7556 -4.6657 -1.7886 13 6 0.8197 -5.7006 -2.8292 14 6 -0.5676 -5.8907 -3.4456 15 6 -0.4668 -6.8300 -4.5528 16 6 -1.8132 -7.0310 -5.2777 17 6 -2.6487 -7.9923 -4.4763 18 6 -3.6053 -7.2741 -3.5052 19 6 -2.9460 -6.0778 -2.7926 20 6 -1.5389 -6.3754 -2.3499 21 6 0.4407 -3.3537 -2.3696 22 6 0.2048 -2.3429 -1.2425 23 1 -0.4849 0.8400 0.0004 24 1 1.0920 -4.0632 0.8618 25 1 2.7848 -3.5375 0.6817 26 1 2.2371 -5.6176 -0.6424 27 1 2.8145 -4.2695 -1.6517 28 1 1.1529 -6.6398 -2.3875 29 1 1.5226 -5.3939 -3.6038 30 1 -0.9166 -4.9312 -3.8274 31 1 -0.1250 -7.7916 -4.1698 32 1 0.2660 -6.4544 -5.2669 33 1 -2.3314 -6.0756 -5.3593 34 1 -1.6361 -7.4408 -6.2721 35 1 -3.2355 -8.6049 -5.1607 36 1 -1.9870 -8.6419 -3.9035 37 1 -3.9443 -7.9875 -2.7540 38 1 -4.4693 -6.9170 -4.0653 39 1 -3.5425 -5.8154 -1.9189 40 1 -2.9288 -5.2273 -3.4740 41 1 -1.4203 -7.4491 -2.2043 42 1 -1.3299 -5.8513 -1.4173 43 1 1.2739 -3.0206 -2.9884 44 1 -0.4580 -3.4330 -2.9812 45 1 -0.6906 -2.6184 -0.6851 46 1 0.0841 -1.3452 -1.6646 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000129922042.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:45:47 Heat of formation + Delta-G solvation = -7.881820 kcal Electronic energy + Delta-G solvation = -21645.466401 eV Core-core repulsion = 18761.972697 eV Total energy + Delta-G solvation = -2883.493704 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 266.205 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.57859 -39.04249 -36.27743 -34.08983 -32.99180 -32.48105 -31.63195 -28.89092 -26.69890 -25.51698 -24.69631 -24.27914 -22.92707 -21.00905 -20.74734 -19.99245 -18.69360 -17.06178 -16.65827 -16.28618 -16.04925 -15.70127 -15.36005 -15.33681 -15.06564 -15.01990 -14.45476 -14.06870 -13.75456 -13.64809 -13.36308 -13.07043 -12.96007 -12.90808 -12.62829 -12.59973 -12.27734 -12.03150 -11.92578 -11.76881 -11.54353 -11.42761 -11.28546 -11.21278 -11.10423 -10.97492 -10.91589 -10.58856 -9.18904 -8.68037 -7.88162 -5.33084 1.45623 1.46893 1.56114 2.50024 3.03792 3.27075 3.65823 3.71644 3.85871 4.03859 4.21231 4.29850 4.31662 4.35145 4.41662 4.50048 4.52048 4.54132 4.58721 4.67140 4.70546 4.79497 4.84989 4.86385 4.96732 5.01790 5.05335 5.11952 5.22265 5.24658 5.27709 5.36992 5.37902 5.43732 5.44207 5.45737 5.59689 5.61964 5.67038 5.68444 5.75798 6.23384 6.35243 6.37602 7.12576 7.83449 8.37946 9.18638 Molecular weight = 266.21amu Principal moments of inertia in cm(-1) A = 0.032482 B = 0.004348 C = 0.004158 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 861.806969 B = 6437.467255 C = 6732.410803 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.051 4.051 3 Si 0.969 3.031 4 H -0.285 1.285 5 H -0.293 1.293 6 H -0.268 1.268 7 C -0.266 4.266 8 H 0.067 0.933 9 N -0.615 5.615 10 C 0.145 3.855 11 C 0.055 3.945 12 N -0.534 5.534 13 C 0.059 3.941 14 C -0.075 4.075 15 C -0.108 4.108 16 C -0.113 4.113 17 C -0.115 4.115 18 C -0.113 4.113 19 C -0.117 4.117 20 C -0.097 4.097 21 C 0.054 3.946 22 C 0.188 3.812 23 H 0.250 0.750 24 H 0.015 0.985 25 H 0.059 0.941 26 H 0.093 0.907 27 H 0.019 0.981 28 H 0.083 0.917 29 H 0.024 0.976 30 H 0.052 0.948 31 H 0.068 0.932 32 H 0.056 0.944 33 H 0.055 0.945 34 H 0.072 0.928 35 H 0.066 0.934 36 H 0.062 0.938 37 H 0.060 0.940 38 H 0.058 0.942 39 H 0.047 0.953 40 H 0.048 0.952 41 H 0.066 0.934 42 H 0.055 0.945 43 H 0.012 0.988 44 H 0.078 0.922 45 H -0.003 1.003 46 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.937 -16.803 -10.052 19.799 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.246 4.246 3 Si 0.797 3.203 4 H -0.212 1.212 5 H -0.220 1.220 6 H -0.193 1.193 7 C -0.396 4.396 8 H 0.085 0.915 9 N -0.339 5.339 10 C 0.019 3.981 11 C -0.074 4.074 12 N -0.258 5.258 13 C -0.069 4.069 14 C -0.093 4.093 15 C -0.146 4.146 16 C -0.151 4.151 17 C -0.152 4.152 18 C -0.151 4.151 19 C -0.155 4.155 20 C -0.135 4.135 21 C -0.075 4.075 22 C 0.062 3.938 23 H 0.059 0.941 24 H 0.033 0.967 25 H 0.077 0.923 26 H 0.112 0.888 27 H 0.038 0.962 28 H 0.101 0.899 29 H 0.042 0.958 30 H 0.070 0.930 31 H 0.087 0.913 32 H 0.075 0.925 33 H 0.074 0.926 34 H 0.090 0.910 35 H 0.085 0.915 36 H 0.081 0.919 37 H 0.079 0.921 38 H 0.077 0.923 39 H 0.066 0.934 40 H 0.067 0.933 41 H 0.085 0.915 42 H 0.074 0.926 43 H 0.030 0.970 44 H 0.096 0.904 45 H 0.015 0.985 46 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -3.391 -16.796 -9.699 19.690 hybrid contribution 0.848 1.602 -0.221 1.826 sum -2.544 -15.195 -9.920 18.323 Atomic orbital electron populations 1.70201 1.06684 1.25849 1.55454 1.25798 0.96073 1.01479 1.01234 0.85240 0.78095 0.79410 0.77550 1.21222 1.21999 1.19275 1.19564 0.92914 0.86074 1.41088 0.91508 1.44401 1.34238 1.02188 1.53044 1.21114 0.97333 0.85553 0.94104 1.22454 0.89724 0.99808 0.95446 1.61884 1.33737 1.05186 1.25039 1.22314 0.96994 0.94986 0.92556 1.20053 0.94449 0.99132 0.95696 1.20469 0.97902 0.99659 0.96583 1.21288 0.95292 0.99820 0.98698 1.21317 0.98161 0.98011 0.97747 1.21894 0.98144 0.96834 0.98188 1.21303 0.96431 0.98345 0.99413 1.21177 0.93568 1.00758 0.97956 1.22548 0.98974 0.89603 0.96409 1.20579 0.87762 0.96197 0.89215 0.94071 0.96669 0.92259 0.88832 0.96228 0.89906 0.95808 0.93010 0.91288 0.92526 0.92594 0.90964 0.91532 0.91935 0.92083 0.92320 0.93412 0.93316 0.91499 0.92614 0.96999 0.90431 0.98493 0.92819 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.83 11.15 21.65 0.24 -56.59 16 2 C -0.05 -2.90 4.94 84.86 0.42 -2.48 16 3 Si 0.97 45.77 29.59 68.60 2.03 47.80 16 4 H -0.29 -13.25 7.11 99.48 0.71 -12.55 16 5 H -0.29 -13.87 7.11 99.48 0.71 -13.17 16 6 H -0.27 -12.04 7.11 99.48 0.71 -11.34 16 7 C -0.27 -15.18 9.63 84.03 0.81 -14.37 16 8 H 0.07 3.70 7.88 -2.91 -0.02 3.67 16 9 N -0.61 -32.47 3.04 -698.16 -2.12 -34.60 16 10 C 0.14 6.29 6.69 86.35 0.58 6.87 16 11 C 0.05 1.94 5.62 86.38 0.49 2.42 16 12 N -0.53 -18.59 3.68 -895.27 -3.30 -21.89 16 13 C 0.06 1.59 4.27 86.30 0.37 1.96 16 14 C -0.07 -1.79 1.62 -12.65 -0.02 -1.81 16 15 C -0.11 -2.04 4.44 28.74 0.13 -1.91 16 16 C -0.11 -1.92 5.61 30.20 0.17 -1.75 16 17 C -0.11 -1.82 5.31 30.14 0.16 -1.66 16 18 C -0.11 -2.04 5.85 31.32 0.18 -1.85 16 19 C -0.12 -2.70 5.31 30.14 0.16 -2.54 16 20 C -0.10 -2.38 4.95 30.19 0.15 -2.23 16 21 C 0.05 2.18 5.46 86.38 0.47 2.65 16 22 C 0.19 9.63 5.42 86.35 0.47 10.10 16 23 H 0.25 14.66 8.31 -92.71 -0.77 13.89 16 24 H 0.02 0.69 8.14 -2.39 -0.02 0.67 16 25 H 0.06 2.46 7.96 -2.38 -0.02 2.44 16 26 H 0.09 2.70 7.99 -2.38 -0.02 2.68 16 27 H 0.02 0.72 8.14 -2.39 -0.02 0.70 16 28 H 0.08 1.97 7.97 -2.39 -0.02 1.95 16 29 H 0.02 0.65 8.05 -2.39 -0.02 0.63 16 30 H 0.05 1.43 5.53 -2.39 -0.01 1.42 16 31 H 0.07 1.18 7.47 -2.39 -0.02 1.16 16 32 H 0.06 1.06 8.05 -2.39 -0.02 1.04 16 33 H 0.06 1.07 6.98 -2.39 -0.02 1.05 16 34 H 0.07 1.03 8.14 -2.38 -0.02 1.02 16 35 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 36 H 0.06 0.98 6.63 -2.39 -0.02 0.96 16 37 H 0.06 1.03 8.14 -2.38 -0.02 1.02 16 38 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 39 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 40 H 0.05 1.20 6.63 -2.39 -0.02 1.19 16 41 H 0.07 1.46 6.98 -2.38 -0.02 1.44 16 42 H 0.06 1.71 7.19 -2.39 -0.02 1.69 16 43 H 0.01 0.50 8.14 -2.39 -0.02 0.48 16 44 H 0.08 2.87 6.08 -2.39 -0.01 2.85 16 45 H 0.00 -0.17 8.14 -2.39 -0.02 -0.19 16 46 H 0.05 3.07 6.12 -2.39 -0.01 3.05 16 Total: -1.00 -63.41 333.01 2.30 -61.12 By element: Atomic # 1 Polarization: 9.85 SS G_CDS: 0.91 Total: 10.76 kcal Atomic # 6 Polarization: -11.13 SS G_CDS: 4.53 Total: -6.60 kcal Atomic # 7 Polarization: -107.90 SS G_CDS: -5.17 Total: -113.07 kcal Atomic # 14 Polarization: 45.77 SS G_CDS: 2.03 Total: 47.80 kcal Total: -63.41 2.30 -61.12 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000129922042.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.234 kcal (2) G-P(sol) polarization free energy of solvation -63.414 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.180 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.299 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.116 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.882 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds