Wall clock time and date at job start Mon Mar 30 2020 00:22:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46894 * 111.00373 * 2 1 4 4 C 1.53009 * 109.46764 * 66.05064 * 3 2 1 5 5 O 1.42899 * 109.47113 * 64.99856 * 4 3 2 6 6 C 1.42903 * 113.99629 * 180.02562 * 5 4 3 7 7 C 1.53000 * 109.46726 * 180.02562 * 6 5 4 8 8 C 1.53003 * 117.49371 * 243.61887 * 7 6 5 9 9 C 1.53001 * 117.49608 * 174.99962 * 7 6 5 10 10 C 1.46900 * 110.99727 * 236.05038 * 2 1 3 11 11 C 1.53009 * 109.47140 * 293.95514 * 10 2 1 12 12 H 1.08998 * 109.46899 * 54.99967 * 11 10 2 13 13 C 1.47200 * 109.46834 * 295.00045 * 11 10 2 14 14 N 3.66499 * 112.02496 * 160.59587 * 2 1 3 15 15 C 1.52993 * 109.47138 * 175.00017 * 11 10 2 16 16 C 1.50702 * 109.47296 * 184.99790 * 15 11 10 17 17 H 1.08002 * 119.99434 * 0.02562 * 16 15 11 18 18 C 1.37875 * 119.99922 * 179.97438 * 16 15 11 19 19 N 1.31510 * 120.00619 * 0.02562 * 18 16 15 20 20 Si 1.86805 * 119.99797 * 180.02562 * 18 16 15 21 21 H 1.48500 * 109.46998 * 60.00226 * 20 18 16 22 22 H 1.48492 * 109.47310 * 180.02562 * 20 18 16 23 23 H 1.48505 * 109.47077 * 300.00657 * 20 18 16 24 24 H 1.09003 * 109.47021 * 59.99516 * 1 2 3 25 25 H 1.08999 * 109.47780 * 179.97438 * 1 2 3 26 26 H 1.09007 * 109.46838 * 299.99852 * 1 2 3 27 27 H 1.09000 * 109.47283 * 306.05012 * 3 2 1 28 28 H 1.09002 * 109.47562 * 186.04332 * 3 2 1 29 29 H 1.09007 * 109.46516 * 304.99789 * 4 3 2 30 30 H 1.09004 * 109.47113 * 185.00258 * 4 3 2 31 31 H 1.09002 * 109.47382 * 59.99956 * 6 5 4 32 32 H 1.09001 * 109.46938 * 299.99942 * 6 5 4 33 33 H 1.08995 * 115.55630 * 29.32572 * 7 6 5 34 34 H 1.08998 * 117.50656 * 0.02562 * 8 7 6 35 35 H 1.09001 * 117.49674 * 145.02590 * 8 7 6 36 36 H 1.09003 * 117.49710 * 214.97494 * 9 7 6 37 37 H 1.08998 * 117.50185 * 359.97438 * 9 7 6 38 38 H 1.08998 * 109.47296 * 53.95011 * 10 2 1 39 39 H 1.09001 * 109.47597 * 173.95609 * 10 2 1 40 40 H 1.09005 * 109.47700 * 305.00033 * 15 11 10 41 41 H 1.08999 * 109.47204 * 64.99881 * 15 11 10 42 42 H 0.97000 * 120.00354 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3713 0.0000 4 6 1.6316 2.0573 1.3184 5 8 2.2957 1.3973 2.3979 6 6 2.0215 1.9625 3.6815 7 6 2.7812 1.1813 4.7555 8 6 1.9539 0.4336 5.8031 9 6 2.7119 1.7046 6.1915 10 6 1.9954 -0.7659 -1.1377 11 6 1.6313 -2.2426 -0.9705 12 1 0.5530 -2.3388 -0.8434 13 6 2.3155 -2.7855 0.2144 14 7 2.8434 -3.2045 1.1288 15 6 2.0697 -3.0198 -2.2133 16 6 1.6029 -4.4484 -2.1031 17 1 1.0485 -4.7697 -1.2337 18 6 1.8825 -5.3449 -3.1126 19 7 2.5572 -4.9535 -4.1714 20 14 1.3032 -7.1156 -2.9762 21 1 -0.1777 -7.1451 -2.8704 22 1 1.7288 -7.8700 -4.1824 23 1 1.8984 -7.7394 -1.7671 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8901 27 1 1.5612 1.9273 -0.8309 28 1 3.0798 1.3443 -0.1082 29 1 0.5532 2.0057 1.4692 30 1 1.9440 3.1010 1.2833 31 1 0.9513 1.9086 3.8811 32 1 2.3417 3.0043 3.6956 33 1 3.7157 0.7235 4.4313 34 1 0.8685 0.4978 5.7270 35 1 2.3441 -0.5164 6.1682 36 1 3.6007 1.5908 6.8121 37 1 2.1254 2.6057 6.3711 38 1 1.5610 -0.3872 -2.0628 39 1 3.0797 -0.6611 -1.1758 40 1 1.6328 -2.5623 -3.1010 41 1 3.1567 -2.9978 -2.2909 42 1 2.7542 -5.5844 -4.8815 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000132569075.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:22:11 Heat of formation + Delta-G solvation = -0.456370 kcal Electronic energy + Delta-G solvation = -19884.444616 eV Core-core repulsion = 16865.439809 eV Total energy + Delta-G solvation = -3019.004807 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -38.80138 -37.89797 -36.57659 -35.38612 -33.53603 -31.82002 -29.61250 -27.30560 -26.86060 -25.44395 -22.82185 -22.55116 -21.59826 -20.98341 -20.55700 -17.01614 -16.67721 -16.63728 -16.16652 -15.59872 -15.05940 -14.85992 -14.50247 -14.22261 -14.18996 -13.21658 -12.98732 -12.91612 -12.56287 -12.28205 -12.07328 -11.81416 -11.72959 -11.54904 -11.42329 -11.28598 -11.12497 -10.98905 -10.93826 -10.62022 -10.57411 -10.47899 -10.31355 -10.07279 -9.52296 -9.45900 -9.18803 -8.42073 -8.08707 -6.06246 -4.09137 3.33523 3.37597 3.39259 3.41686 3.76880 3.84638 3.96223 4.07817 4.44499 4.61969 4.71218 4.82991 4.98887 5.06267 5.10974 5.15851 5.27321 5.31590 5.31881 5.40264 5.43669 5.47773 5.52267 5.58901 5.70678 5.72547 5.84043 5.89435 5.91775 6.05841 6.07649 6.13963 6.45388 6.56450 7.14130 7.23876 7.33439 7.46649 7.58040 7.89190 8.27479 8.71556 8.95602 9.56023 11.04696 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.024915 B = 0.003688 C = 0.003365 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1123.569958 B = 7589.394139 C = 8319.080439 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 N -0.536 5.536 3 C 0.057 3.943 4 C 0.067 3.933 5 O -0.364 6.364 6 C 0.093 3.907 7 C -0.150 4.150 8 C -0.175 4.175 9 C -0.178 4.178 10 C 0.063 3.937 11 C 0.011 3.989 12 H 0.099 0.901 13 C 0.256 3.744 14 N -0.478 5.478 15 C 0.032 3.968 16 C -0.525 4.525 17 H 0.056 0.944 18 C 0.062 3.938 19 N -0.893 5.893 20 Si 0.891 3.109 21 H -0.275 1.275 22 H -0.287 1.287 23 H -0.276 1.276 24 H 0.026 0.974 25 H 0.075 0.925 26 H 0.062 0.938 27 H 0.049 0.951 28 H 0.083 0.917 29 H 0.049 0.951 30 H 0.047 0.953 31 H 0.046 0.954 32 H 0.047 0.953 33 H 0.114 0.886 34 H 0.094 0.906 35 H 0.096 0.904 36 H 0.096 0.904 37 H 0.092 0.908 38 H 0.052 0.948 39 H 0.079 0.921 40 H 0.036 0.964 41 H 0.026 0.974 42 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.912 17.835 11.423 21.538 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 N -0.260 5.260 3 C -0.071 4.071 4 C -0.010 4.010 5 O -0.282 6.282 6 C 0.017 3.983 7 C -0.168 4.168 8 C -0.212 4.212 9 C -0.215 4.215 10 C -0.066 4.066 11 C -0.011 4.011 12 H 0.117 0.883 13 C -0.061 4.061 14 N -0.155 5.155 15 C -0.007 4.007 16 C -0.564 4.564 17 H 0.074 0.926 18 C -0.139 4.139 19 N -0.531 5.531 20 Si 0.719 3.281 21 H -0.201 1.201 22 H -0.212 1.212 23 H -0.202 1.202 24 H 0.044 0.956 25 H 0.094 0.906 26 H 0.081 0.919 27 H 0.067 0.933 28 H 0.101 0.899 29 H 0.067 0.933 30 H 0.066 0.934 31 H 0.064 0.936 32 H 0.065 0.935 33 H 0.132 0.868 34 H 0.112 0.888 35 H 0.114 0.886 36 H 0.115 0.885 37 H 0.111 0.889 38 H 0.070 0.930 39 H 0.097 0.903 40 H 0.054 0.946 41 H 0.044 0.956 42 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -2.764 16.755 13.036 21.408 hybrid contribution -0.962 -0.276 -1.063 1.460 sum -3.725 16.479 11.973 20.707 Atomic orbital electron populations 1.22502 0.87759 1.02783 0.99945 1.61949 1.07655 1.12528 1.43880 1.22116 1.01440 0.89204 0.94370 1.22548 0.96341 0.94681 0.87430 1.88066 1.70054 1.56543 1.13583 1.21935 0.97566 0.95372 0.83465 1.22117 1.02017 1.03413 0.89223 1.23040 0.98747 0.96206 1.03205 1.22964 1.03111 0.98248 0.97139 1.22247 1.00776 0.92446 0.91112 1.19230 0.99134 0.92535 0.90215 0.88324 1.28781 0.92806 0.91489 0.93038 1.80962 1.10542 1.11017 1.12936 1.19163 0.97705 0.94343 0.89479 1.21116 1.35961 0.94563 1.04713 0.92559 1.24947 0.94963 0.98788 0.95252 1.69926 1.39494 1.35347 1.08371 0.86658 0.79224 0.84727 0.77498 1.20078 1.21221 1.20198 0.95590 0.90613 0.91895 0.93295 0.89879 0.93327 0.93447 0.93630 0.93507 0.86805 0.88777 0.88573 0.88546 0.88905 0.92995 0.90277 0.94552 0.95583 0.92777 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.22 9.14 60.06 0.55 0.77 16 2 N -0.54 -7.65 4.41 -242.91 -1.07 -8.72 16 3 C 0.06 0.66 5.34 -3.82 -0.02 0.64 16 4 C 0.07 0.72 5.99 37.16 0.22 0.95 16 5 O -0.36 -4.97 10.29 -35.23 -0.36 -5.33 16 6 C 0.09 1.01 6.22 37.16 0.23 1.24 16 7 C -0.15 -1.64 6.06 -90.62 -0.55 -2.19 16 8 C -0.18 -1.76 10.18 -26.73 -0.27 -2.03 16 9 C -0.18 -1.52 10.25 -26.73 -0.27 -1.79 16 10 C 0.06 0.98 4.32 -3.82 -0.02 0.96 16 11 C 0.01 0.21 2.14 -93.41 -0.20 0.01 16 12 H 0.10 1.78 6.26 -51.93 -0.33 1.46 16 13 C 0.26 5.64 13.67 -20.76 -0.28 5.36 16 14 N -0.48 -11.44 18.54 42.15 0.78 -10.66 16 15 C 0.03 0.75 4.42 -27.89 -0.12 0.63 16 16 C -0.53 -14.23 8.60 -34.44 -0.30 -14.52 16 17 H 0.06 1.52 7.59 -52.49 -0.40 1.12 16 18 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 19 N -0.89 -25.81 13.29 55.43 0.74 -25.08 16 20 Si 0.89 21.55 29.54 -169.99 -5.02 16.53 16 21 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 22 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 23 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 24 H 0.03 0.28 8.14 -51.93 -0.42 -0.14 16 25 H 0.08 1.00 6.21 -51.93 -0.32 0.67 16 26 H 0.06 0.71 6.37 -51.92 -0.33 0.38 16 27 H 0.05 0.48 8.12 -51.93 -0.42 0.06 16 28 H 0.08 1.01 7.93 -51.93 -0.41 0.60 16 29 H 0.05 0.49 6.34 -51.93 -0.33 0.16 16 30 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.05 0.46 7.88 -51.93 -0.41 0.05 16 32 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.11 1.41 8.14 -51.93 -0.42 0.99 16 34 H 0.09 0.89 8.03 -51.93 -0.42 0.47 16 35 H 0.10 0.97 8.14 -51.93 -0.42 0.55 16 36 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 37 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.05 0.73 8.12 -51.93 -0.42 0.31 16 39 H 0.08 1.26 7.93 -51.93 -0.41 0.85 16 40 H 0.04 0.86 8.14 -51.93 -0.42 0.44 16 41 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 42 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 LS Contribution 351.53 15.07 5.30 5.30 Total: -1.00 -31.60 351.53 -7.91 -39.51 By element: Atomic # 1 Polarization: 3.94 SS G_CDS: -7.14 Total: -3.20 kcal Atomic # 6 Polarization: -7.21 SS G_CDS: -1.13 Total: -8.34 kcal Atomic # 7 Polarization: -44.90 SS G_CDS: 0.45 Total: -44.45 kcal Atomic # 8 Polarization: -4.97 SS G_CDS: -0.36 Total: -5.33 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.53 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -31.60 -7.91 -39.51 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000132569075.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.049 kcal (2) G-P(sol) polarization free energy of solvation -31.598 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.451 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.908 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.505 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.456 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds