Wall clock time and date at job start Mon Mar 30 2020 00:22:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46894 * 111.00373 * 2 1 4 4 C 1.53009 * 109.46764 * 66.05064 * 3 2 1 5 5 O 1.42899 * 109.47113 * 64.99856 * 4 3 2 6 6 C 1.42903 * 113.99629 * 180.02562 * 5 4 3 7 7 C 1.53000 * 109.46726 * 180.02562 * 6 5 4 8 8 C 1.53003 * 117.49371 * 243.61887 * 7 6 5 9 9 C 1.53001 * 117.49608 * 174.99962 * 7 6 5 10 10 C 1.46900 * 110.99727 * 236.05038 * 2 1 3 11 11 C 1.53009 * 109.47140 * 293.95514 * 10 2 1 12 12 H 1.08998 * 109.46899 * 54.99967 * 11 10 2 13 13 C 1.47200 * 109.46834 * 295.00045 * 11 10 2 14 14 N 3.66499 * 112.02496 * 160.59587 * 2 1 3 15 15 C 1.52993 * 109.47138 * 175.00017 * 11 10 2 16 16 C 1.50702 * 109.47296 * 184.99790 * 15 11 10 17 17 H 1.08002 * 119.99434 * 0.02562 * 16 15 11 18 18 C 1.37875 * 119.99922 * 179.97438 * 16 15 11 19 19 N 1.31510 * 120.00619 * 0.02562 * 18 16 15 20 20 Si 1.86805 * 119.99797 * 180.02562 * 18 16 15 21 21 H 1.48500 * 109.46998 * 60.00226 * 20 18 16 22 22 H 1.48492 * 109.47310 * 180.02562 * 20 18 16 23 23 H 1.48505 * 109.47077 * 300.00657 * 20 18 16 24 24 H 1.09003 * 109.47021 * 59.99516 * 1 2 3 25 25 H 1.08999 * 109.47780 * 179.97438 * 1 2 3 26 26 H 1.09007 * 109.46838 * 299.99852 * 1 2 3 27 27 H 1.09000 * 109.47283 * 306.05012 * 3 2 1 28 28 H 1.09002 * 109.47562 * 186.04332 * 3 2 1 29 29 H 1.09007 * 109.46516 * 304.99789 * 4 3 2 30 30 H 1.09004 * 109.47113 * 185.00258 * 4 3 2 31 31 H 1.09002 * 109.47382 * 59.99956 * 6 5 4 32 32 H 1.09001 * 109.46938 * 299.99942 * 6 5 4 33 33 H 1.08995 * 115.55630 * 29.32572 * 7 6 5 34 34 H 1.08998 * 117.50656 * 0.02562 * 8 7 6 35 35 H 1.09001 * 117.49674 * 145.02590 * 8 7 6 36 36 H 1.09003 * 117.49710 * 214.97494 * 9 7 6 37 37 H 1.08998 * 117.50185 * 359.97438 * 9 7 6 38 38 H 1.08998 * 109.47296 * 53.95011 * 10 2 1 39 39 H 1.09001 * 109.47597 * 173.95609 * 10 2 1 40 40 H 1.09005 * 109.47700 * 305.00033 * 15 11 10 41 41 H 1.08999 * 109.47204 * 64.99881 * 15 11 10 42 42 H 0.97000 * 120.00354 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3713 0.0000 4 6 1.6316 2.0573 1.3184 5 8 2.2957 1.3973 2.3979 6 6 2.0215 1.9625 3.6815 7 6 2.7812 1.1813 4.7555 8 6 1.9539 0.4336 5.8031 9 6 2.7119 1.7046 6.1915 10 6 1.9954 -0.7659 -1.1377 11 6 1.6313 -2.2426 -0.9705 12 1 0.5530 -2.3388 -0.8434 13 6 2.3155 -2.7855 0.2144 14 7 2.8434 -3.2045 1.1288 15 6 2.0697 -3.0198 -2.2133 16 6 1.6029 -4.4484 -2.1031 17 1 1.0485 -4.7697 -1.2337 18 6 1.8825 -5.3449 -3.1126 19 7 2.5572 -4.9535 -4.1714 20 14 1.3032 -7.1156 -2.9762 21 1 -0.1777 -7.1451 -2.8704 22 1 1.7288 -7.8700 -4.1824 23 1 1.8984 -7.7394 -1.7671 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8901 27 1 1.5612 1.9273 -0.8309 28 1 3.0798 1.3443 -0.1082 29 1 0.5532 2.0057 1.4692 30 1 1.9440 3.1010 1.2833 31 1 0.9513 1.9086 3.8811 32 1 2.3417 3.0043 3.6956 33 1 3.7157 0.7235 4.4313 34 1 0.8685 0.4978 5.7270 35 1 2.3441 -0.5164 6.1682 36 1 3.6007 1.5908 6.8121 37 1 2.1254 2.6057 6.3711 38 1 1.5610 -0.3872 -2.0628 39 1 3.0797 -0.6611 -1.1758 40 1 1.6328 -2.5623 -3.1010 41 1 3.1567 -2.9978 -2.2909 42 1 2.7542 -5.5844 -4.8815 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000132569075.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:22:10 Heat of formation + Delta-G solvation = -19.602079 kcal Electronic energy + Delta-G solvation = -19885.274837 eV Core-core repulsion = 16865.439809 eV Total energy + Delta-G solvation = -3019.835028 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.78197 -38.98909 -37.65804 -36.77453 -35.45170 -33.57150 -30.70050 -28.74109 -27.75937 -26.81995 -24.28467 -23.30956 -23.25615 -21.93519 -21.42693 -18.52463 -18.23275 -17.83859 -17.31615 -16.65704 -16.37460 -16.06659 -15.82024 -15.31554 -15.23259 -14.66935 -14.33940 -14.28178 -13.88264 -13.69334 -13.48713 -13.26720 -13.02114 -12.81293 -12.67338 -12.55385 -12.45991 -12.43299 -12.33614 -12.13823 -11.85301 -11.71418 -11.37023 -11.32915 -11.10494 -11.06264 -10.54364 -10.32703 -9.10907 -8.18835 -6.27204 1.40928 1.43158 1.50130 2.09693 2.18326 2.42023 2.61980 2.97367 3.03224 3.16404 3.38523 3.84980 3.94459 4.04550 4.12360 4.24012 4.32205 4.35820 4.37033 4.48639 4.53919 4.64436 4.67202 4.71312 4.72384 4.73875 4.82690 4.89229 4.97971 5.01100 5.01685 5.19942 5.20903 5.24146 5.46754 5.62559 5.79583 6.10012 6.21987 6.24320 6.48771 6.83837 6.96526 7.41161 8.91956 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.024915 B = 0.003688 C = 0.003365 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1123.569958 B = 7589.394139 C = 8319.080439 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 N -0.557 5.557 3 C 0.056 3.944 4 C 0.066 3.934 5 O -0.400 6.400 6 C 0.094 3.906 7 C -0.173 4.173 8 C -0.186 4.186 9 C -0.153 4.153 10 C 0.074 3.926 11 C 0.021 3.979 12 H 0.116 0.884 13 C 0.266 3.734 14 N -0.516 5.516 15 C 0.039 3.961 16 C -0.541 4.541 17 H 0.053 0.947 18 C 0.012 3.988 19 N -0.923 5.923 20 Si 0.948 3.052 21 H -0.262 1.262 22 H -0.281 1.281 23 H -0.282 1.282 24 H 0.045 0.955 25 H 0.063 0.937 26 H 0.073 0.927 27 H 0.074 0.926 28 H 0.072 0.928 29 H 0.058 0.942 30 H 0.071 0.929 31 H 0.053 0.947 32 H 0.065 0.935 33 H 0.089 0.911 34 H 0.100 0.900 35 H 0.088 0.912 36 H 0.104 0.896 37 H 0.112 0.888 38 H 0.072 0.928 39 H 0.071 0.929 40 H 0.036 0.964 41 H 0.000 1.000 42 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.317 19.276 11.829 23.232 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 N -0.282 5.282 3 C -0.072 4.072 4 C -0.011 4.011 5 O -0.319 6.319 6 C 0.018 3.982 7 C -0.191 4.191 8 C -0.223 4.223 9 C -0.190 4.190 10 C -0.055 4.055 11 C -0.001 4.001 12 H 0.134 0.866 13 C -0.050 4.050 14 N -0.193 5.193 15 C 0.001 3.999 16 C -0.579 4.579 17 H 0.071 0.929 18 C -0.187 4.187 19 N -0.563 5.563 20 Si 0.774 3.226 21 H -0.186 1.186 22 H -0.206 1.206 23 H -0.208 1.208 24 H 0.063 0.937 25 H 0.082 0.918 26 H 0.092 0.908 27 H 0.092 0.908 28 H 0.090 0.910 29 H 0.076 0.924 30 H 0.089 0.911 31 H 0.071 0.929 32 H 0.083 0.917 33 H 0.108 0.892 34 H 0.118 0.882 35 H 0.106 0.894 36 H 0.123 0.877 37 H 0.131 0.869 38 H 0.090 0.910 39 H 0.089 0.911 40 H 0.055 0.945 41 H 0.018 0.982 42 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -4.182 18.212 13.449 23.023 hybrid contribution -0.509 -0.700 -1.169 1.455 sum -4.692 17.512 12.280 21.897 Atomic orbital electron populations 1.22523 0.86534 1.02455 1.01416 1.61872 1.08943 1.14169 1.43213 1.22199 1.00903 0.88102 0.95963 1.22672 0.96732 0.95501 0.86169 1.88025 1.70908 1.57953 1.15047 1.22030 0.97932 0.95988 0.82296 1.22148 1.01456 1.04828 0.90696 1.23103 0.99124 0.96793 1.03308 1.23054 1.03036 0.97980 0.94924 1.22048 1.00585 0.90146 0.92744 1.19228 0.99603 0.94331 0.86959 0.86648 1.29363 0.92037 0.90537 0.93089 1.80956 1.11814 1.12290 1.14278 1.18979 0.95865 0.93579 0.91512 1.21523 1.35593 0.96383 1.04366 0.92923 1.25709 0.95243 1.02614 0.95128 1.70021 1.40616 1.36624 1.09050 0.85752 0.79424 0.80224 0.77207 1.18639 1.20606 1.20789 0.93680 0.91827 0.90805 0.90769 0.90982 0.92383 0.91073 0.92854 0.91746 0.89227 0.88179 0.89352 0.87714 0.86938 0.90969 0.91071 0.94534 0.98206 0.92670 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.41 9.14 127.69 1.17 1.57 16 2 N -0.56 -14.97 4.41 -922.42 -4.07 -19.04 16 3 C 0.06 1.19 5.34 86.31 0.46 1.65 16 4 C 0.07 1.27 5.99 71.99 0.43 1.70 16 5 O -0.40 -10.53 10.29 -148.98 -1.53 -12.06 16 6 C 0.09 1.90 6.22 71.98 0.45 2.35 16 7 C -0.17 -3.74 6.06 -10.79 -0.07 -3.81 16 8 C -0.19 -3.65 10.18 30.60 0.31 -3.34 16 9 C -0.15 -2.36 10.25 30.60 0.31 -2.05 16 10 C 0.07 2.21 4.32 86.31 0.37 2.58 16 11 C 0.02 0.78 2.14 -12.60 -0.03 0.75 16 12 H 0.12 4.03 6.26 -2.39 -0.01 4.01 16 13 C 0.27 11.78 13.67 89.44 1.22 13.00 16 14 N -0.52 -25.02 18.54 20.01 0.37 -24.65 16 15 C 0.04 1.87 4.42 29.85 0.13 2.00 16 16 C -0.54 -29.28 8.60 25.60 0.22 -29.06 16 17 H 0.05 2.83 7.59 -2.91 -0.02 2.81 16 18 C 0.01 0.67 5.46 84.65 0.46 1.13 16 19 N -0.92 -53.61 13.29 21.45 0.28 -53.33 16 20 Si 0.95 44.00 29.54 68.60 2.03 46.02 16 21 H -0.26 -11.50 7.11 99.48 0.71 -10.79 16 22 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 23 H -0.28 -13.25 7.11 99.48 0.71 -12.55 16 24 H 0.04 0.83 8.14 -2.39 -0.02 0.81 16 25 H 0.06 1.55 6.21 -2.39 -0.01 1.54 16 26 H 0.07 1.47 6.37 -2.38 -0.02 1.46 16 27 H 0.07 1.21 8.12 -2.39 -0.02 1.19 16 28 H 0.07 1.68 7.93 -2.39 -0.02 1.66 16 29 H 0.06 1.00 6.34 -2.38 -0.02 0.98 16 30 H 0.07 1.03 8.14 -2.38 -0.02 1.01 16 31 H 0.05 0.97 7.88 -2.39 -0.02 0.95 16 32 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 33 H 0.09 2.34 8.14 -2.39 -0.02 2.32 16 34 H 0.10 1.80 8.03 -2.39 -0.02 1.78 16 35 H 0.09 1.82 8.14 -2.39 -0.02 1.80 16 36 H 0.10 1.43 8.14 -2.39 -0.02 1.41 16 37 H 0.11 1.31 8.14 -2.39 -0.02 1.29 16 38 H 0.07 1.87 8.12 -2.39 -0.02 1.86 16 39 H 0.07 2.23 7.93 -2.39 -0.02 2.21 16 40 H 0.04 1.73 8.14 -2.38 -0.02 1.71 16 41 H 0.00 -0.03 8.14 -2.39 -0.02 -0.04 16 42 H 0.26 14.58 8.31 -92.71 -0.77 13.81 16 Total: -1.00 -67.83 351.53 3.51 -64.32 By element: Atomic # 1 Polarization: 9.30 SS G_CDS: 0.98 Total: 10.28 kcal Atomic # 6 Polarization: -16.98 SS G_CDS: 5.45 Total: -11.53 kcal Atomic # 7 Polarization: -93.61 SS G_CDS: -3.41 Total: -97.02 kcal Atomic # 8 Polarization: -10.53 SS G_CDS: -1.53 Total: -12.06 kcal Atomic # 14 Polarization: 44.00 SS G_CDS: 2.03 Total: 46.02 kcal Total: -67.83 3.51 -64.32 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000132569075.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.716 kcal (2) G-P(sol) polarization free energy of solvation -67.826 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.110 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.508 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.318 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.602 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds