Wall clock time and date at job start Mon Mar 30 2020 00:59:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53120 * 109.52124 * 2 1 4 4 C 1.53034 * 109.27840 * 177.55938 * 3 2 1 5 5 N 1.46841 * 109.52606 * 300.82070 * 4 3 2 6 6 C 1.46896 * 111.00504 * 185.83632 * 5 4 3 7 7 C 1.52998 * 109.47277 * 170.00316 * 6 5 4 8 8 H 1.08996 * 109.52778 * 54.92319 * 7 6 5 9 9 C 1.53049 * 109.49419 * 175.00357 * 7 6 5 10 10 C 1.53041 * 109.53444 * 181.31406 * 9 7 6 11 11 C 1.53188 * 109.31266 * 298.63539 * 10 9 7 12 12 N 1.46926 * 108.77834 * 54.63692 * 11 10 9 13 13 C 1.36933 * 120.63263 * 126.37312 * 12 11 10 14 14 H 1.08007 * 119.99998 * 332.44896 * 13 12 11 15 15 C 1.38810 * 120.00289 * 152.18092 * 13 12 11 16 16 N 1.31615 * 119.99831 * 343.15131 * 15 13 12 17 17 Si 1.86800 * 120.00046 * 163.15229 * 15 13 12 18 18 H 1.48494 * 109.47093 * 0.02562 * 17 15 13 19 19 H 1.48499 * 109.46909 * 120.00045 * 17 15 13 20 20 H 1.48499 * 109.47179 * 239.99913 * 17 15 13 21 21 C 1.46919 * 118.73504 * 306.63930 * 12 11 10 22 22 C 1.46854 * 111.19802 * 61.74119 * 5 4 3 23 23 C 1.53042 * 109.51913 * 298.26075 * 22 5 4 24 24 H 1.08993 * 109.47192 * 59.99892 * 1 2 3 25 25 H 1.08996 * 109.46722 * 179.97438 * 1 2 3 26 26 H 1.09003 * 109.46672 * 299.99639 * 1 2 3 27 27 H 1.08994 * 109.51978 * 239.87678 * 2 1 3 28 28 H 1.09006 * 109.50361 * 57.61760 * 3 2 1 29 29 H 1.08999 * 109.53780 * 297.52163 * 3 2 1 30 30 H 1.09002 * 109.46663 * 180.80126 * 4 3 2 31 31 H 1.09003 * 109.45110 * 60.83308 * 4 3 2 32 32 H 1.09003 * 109.47004 * 50.00100 * 6 5 4 33 33 H 1.09003 * 109.47061 * 290.00293 * 6 5 4 34 34 H 1.08999 * 109.46064 * 61.29962 * 9 7 6 35 35 H 1.08998 * 109.45894 * 301.33469 * 9 7 6 36 36 H 1.08994 * 109.49781 * 178.68281 * 10 9 7 37 37 H 1.08999 * 109.49635 * 58.58334 * 10 9 7 38 38 H 1.09002 * 109.58586 * 294.84582 * 11 10 9 39 39 H 1.09003 * 109.58579 * 174.42321 * 11 10 9 40 40 H 0.97000 * 120.00217 * 180.02562 * 16 15 13 41 41 H 1.09007 * 109.58704 * 173.14472 * 21 12 11 42 42 H 1.09003 * 109.59490 * 293.56909 * 21 12 11 43 43 H 1.08998 * 109.45872 * 58.27241 * 22 5 4 44 44 H 1.08996 * 109.46789 * 178.24318 * 22 5 4 45 45 H 1.08993 * 109.50434 * 299.23103 * 23 22 5 46 46 H 1.09001 * 109.53272 * 179.13788 * 23 22 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0417 1.4432 0.0000 4 6 3.5708 1.4371 0.0615 5 7 4.0103 0.7431 1.2786 6 6 5.4671 0.8379 1.4420 7 6 5.8589 0.3280 2.8302 8 1 5.4700 -0.6804 2.9711 9 6 7.3841 0.3094 2.9558 10 6 7.7778 -0.2314 4.3323 11 6 7.2143 0.6900 5.4187 12 7 5.7657 0.8287 5.2166 13 6 4.8906 0.5647 6.2362 14 1 5.1598 -0.1384 7.0105 15 6 3.6596 1.2049 6.2776 16 7 3.4557 2.2864 5.5557 17 14 2.2925 0.5315 7.3579 18 1 2.7725 -0.6835 8.0638 19 1 1.8977 1.5590 8.3546 20 1 1.1207 0.1842 6.5144 21 6 5.2736 1.2504 3.8980 22 6 3.5709 -0.6582 1.2789 23 6 2.0417 -0.7146 1.2537 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3632 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8901 27 1 1.8942 -0.5156 -0.8886 28 1 1.6447 1.9701 0.8677 29 1 1.7161 1.9454 -0.9110 30 1 3.9378 2.4634 0.0760 31 1 3.9673 0.9221 -0.8135 32 1 5.7777 1.8773 1.3356 33 1 5.9583 0.2322 0.6804 34 1 7.7704 1.3220 2.8395 35 1 7.8045 -0.3308 2.1802 36 1 8.8642 -0.2663 4.4123 37 1 7.3707 -1.2345 4.4590 38 1 7.6884 1.6691 5.3494 39 1 7.4065 0.2573 6.4005 40 1 2.5957 2.7340 5.5849 41 1 4.1856 1.1874 3.8768 42 1 5.5861 2.2761 3.7021 43 1 3.9675 -1.1632 0.3982 44 1 3.9379 -1.1538 2.1777 45 1 1.6447 -0.2218 2.1412 46 1 1.7156 -1.7545 1.2385 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000154724195.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:59:27 Heat of formation + Delta-G solvation = 0.569615 kcal Electronic energy + Delta-G solvation = -21995.094616 eV Core-core repulsion = 19111.967393 eV Total energy + Delta-G solvation = -2883.127223 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 266.205 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -39.11591 -37.37884 -34.59570 -32.91253 -31.01856 -30.49860 -29.69741 -27.70671 -25.11754 -24.36089 -22.99799 -22.01659 -21.64319 -20.21707 -19.40140 -18.74732 -16.56119 -15.62580 -15.05578 -14.49239 -14.43468 -14.15219 -13.95054 -13.80596 -13.44261 -13.26981 -12.92982 -12.63915 -12.17869 -12.14833 -12.07140 -11.83828 -11.60209 -11.29512 -11.04998 -10.91497 -10.87297 -10.63865 -10.43814 -10.34069 -10.22709 -10.09782 -10.05777 -9.80870 -9.57086 -9.36178 -9.19790 -8.32227 -7.78703 -6.50434 -5.63295 -3.05672 3.44562 3.52168 3.54185 4.26170 4.60588 4.91044 4.97166 4.99865 5.29506 5.48338 5.49639 5.58395 5.58780 5.65246 5.70671 5.74899 5.76916 5.80668 5.81415 5.85000 5.91130 6.02664 6.05159 6.10680 6.25152 6.27324 6.31645 6.40546 6.41657 6.42762 6.45273 6.57732 6.65080 6.69227 6.86436 6.91939 7.05673 7.13893 7.52054 7.56194 7.68779 7.89582 8.06833 8.62780 9.37354 10.01455 10.58609 11.43969 Molecular weight = 266.21amu Principal moments of inertia in cm(-1) A = 0.014298 B = 0.007697 C = 0.005544 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1957.817452 B = 3636.704978 C = 5049.466948 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.092 4.092 3 C -0.111 4.111 4 C 0.059 3.941 5 N -0.524 5.524 6 C 0.070 3.930 7 C -0.110 4.110 8 H 0.062 0.938 9 C -0.104 4.104 10 C -0.132 4.132 11 C 0.144 3.856 12 N -0.595 5.595 13 C -0.253 4.253 14 H 0.062 0.938 15 C 0.006 3.994 16 N -0.893 5.893 17 Si 0.895 3.105 18 H -0.279 1.279 19 H -0.292 1.292 20 H -0.289 1.289 21 C 0.188 3.812 22 C 0.058 3.942 23 C -0.112 4.112 24 H 0.050 0.950 25 H 0.051 0.949 26 H 0.057 0.943 27 H 0.060 0.940 28 H 0.075 0.925 29 H 0.059 0.941 30 H 0.071 0.929 31 H 0.022 0.978 32 H 0.069 0.931 33 H 0.018 0.982 34 H 0.052 0.948 35 H 0.040 0.960 36 H 0.047 0.953 37 H 0.055 0.945 38 H 0.014 0.986 39 H 0.049 0.951 40 H 0.251 0.749 41 H 0.101 0.899 42 H 0.009 0.991 43 H 0.021 0.979 44 H 0.082 0.918 45 H 0.076 0.924 46 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.070 -4.179 -12.381 13.067 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.111 4.111 3 C -0.149 4.149 4 C -0.069 4.069 5 N -0.249 5.249 6 C -0.058 4.058 7 C -0.131 4.131 8 H 0.081 0.919 9 C -0.142 4.142 10 C -0.172 4.172 11 C 0.017 3.983 12 N -0.317 5.317 13 C -0.383 4.383 14 H 0.080 0.920 15 C -0.193 4.193 16 N -0.537 5.537 17 Si 0.726 3.274 18 H -0.204 1.204 19 H -0.219 1.219 20 H -0.216 1.216 21 C 0.063 3.937 22 C -0.070 4.070 23 C -0.150 4.150 24 H 0.069 0.931 25 H 0.070 0.930 26 H 0.076 0.924 27 H 0.079 0.921 28 H 0.093 0.907 29 H 0.078 0.922 30 H 0.090 0.910 31 H 0.040 0.960 32 H 0.087 0.913 33 H 0.037 0.963 34 H 0.071 0.929 35 H 0.058 0.942 36 H 0.065 0.935 37 H 0.073 0.927 38 H 0.032 0.968 39 H 0.068 0.932 40 H 0.061 0.939 41 H 0.119 0.881 42 H 0.027 0.973 43 H 0.039 0.961 44 H 0.100 0.900 45 H 0.095 0.905 46 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -0.306 -3.833 -11.964 12.567 hybrid contribution -0.303 -0.683 -0.217 0.778 sum -0.609 -4.516 -12.181 13.005 Atomic orbital electron populations 1.21810 0.95464 1.01325 1.01657 1.21163 0.95326 0.96453 0.98122 1.21637 0.95000 0.96329 1.01921 1.22026 0.95627 0.98839 0.90411 1.61782 1.12849 1.13763 1.36457 1.22086 0.86422 1.00506 0.96779 1.21821 0.94569 1.01571 0.95091 0.91927 1.21417 0.96338 0.99942 0.96497 1.21988 0.98391 1.00294 0.96499 1.20892 0.86466 0.95378 0.95530 1.44118 0.99384 1.79647 1.08568 1.19163 0.96685 1.18191 1.04243 0.92043 1.24987 0.99626 0.95599 0.99099 1.70046 1.23020 1.17300 1.43378 0.86333 0.82762 0.78384 0.79959 1.20442 1.21923 1.21580 1.20630 1.00755 0.91650 0.80683 1.22084 0.95394 0.89113 1.00419 1.21644 0.95158 0.99738 0.98458 0.93120 0.93036 0.92408 0.92146 0.90667 0.92221 0.91020 0.95969 0.91292 0.96341 0.92897 0.94159 0.93472 0.92655 0.96798 0.93218 0.93855 0.88089 0.97262 0.96083 0.90021 0.90540 0.92158 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.63 9.20 37.16 0.34 -1.28 16 2 C -0.09 -1.16 2.79 -90.50 -0.25 -1.41 16 3 C -0.11 -1.47 5.38 -26.65 -0.14 -1.61 16 4 C 0.06 0.85 5.46 -3.84 -0.02 0.82 16 5 N -0.52 -8.88 4.22 -234.67 -0.99 -9.87 16 6 C 0.07 1.19 4.35 -3.83 -0.02 1.17 16 7 C -0.11 -2.14 2.25 -90.72 -0.20 -2.35 16 8 H 0.06 1.29 6.22 -51.93 -0.32 0.96 16 9 C -0.10 -1.82 5.17 -26.68 -0.14 -1.96 16 10 C -0.13 -2.41 6.08 -26.61 -0.16 -2.58 16 11 C 0.14 3.16 6.52 -3.71 -0.02 3.14 16 12 N -0.59 -15.42 3.00 -172.58 -0.52 -15.93 16 13 C -0.25 -7.14 9.58 -15.06 -0.14 -7.29 16 14 H 0.06 1.72 7.88 -52.48 -0.41 1.30 16 15 C 0.01 0.17 4.92 -17.43 -0.09 0.08 16 16 N -0.89 -26.43 11.18 55.49 0.62 -25.80 16 17 Si 0.90 22.18 29.59 -169.99 -5.03 17.15 16 18 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 19 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 20 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 21 C 0.19 4.60 4.38 -3.93 -0.02 4.58 16 22 C 0.06 0.91 5.30 -3.83 -0.02 0.89 16 23 C -0.11 -1.63 5.38 -26.65 -0.14 -1.78 16 24 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 25 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 26 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 27 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 28 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 29 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.07 1.01 8.02 -51.93 -0.42 0.59 16 31 H 0.02 0.30 8.14 -51.93 -0.42 -0.13 16 32 H 0.07 1.17 7.99 -51.93 -0.41 0.76 16 33 H 0.02 0.29 8.12 -51.93 -0.42 -0.14 16 34 H 0.05 0.93 8.14 -51.93 -0.42 0.50 16 35 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 37 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 38 H 0.01 0.31 8.14 -51.93 -0.42 -0.11 16 39 H 0.05 1.07 7.93 -51.93 -0.41 0.66 16 40 H 0.25 7.21 8.31 -40.82 -0.34 6.87 16 41 H 0.10 2.78 5.83 -51.93 -0.30 2.48 16 42 H 0.01 0.25 8.14 -51.93 -0.42 -0.18 16 43 H 0.02 0.31 8.14 -51.93 -0.42 -0.11 16 44 H 0.08 1.43 6.12 -51.93 -0.32 1.11 16 45 H 0.08 1.30 8.14 -51.93 -0.42 0.88 16 46 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 LS Contribution 342.76 15.07 5.17 5.17 Total: -1.00 -29.52 342.76 -10.70 -40.22 By element: Atomic # 1 Polarization: 7.56 SS G_CDS: -8.92 Total: -1.37 kcal Atomic # 6 Polarization: -8.53 SS G_CDS: -1.03 Total: -9.56 kcal Atomic # 7 Polarization: -50.72 SS G_CDS: -0.89 Total: -51.61 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -5.03 Total: 17.15 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -29.52 -10.70 -40.22 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000154724195.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.792 kcal (2) G-P(sol) polarization free energy of solvation -29.519 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.273 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.703 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.222 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.570 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds