Wall clock time and date at job start Mon Mar 30 2020 00:59:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53120 * 109.52124 * 2 1 4 4 C 1.53034 * 109.27840 * 177.55938 * 3 2 1 5 5 N 1.46841 * 109.52606 * 300.82070 * 4 3 2 6 6 C 1.46896 * 111.00504 * 185.83632 * 5 4 3 7 7 C 1.52998 * 109.47277 * 170.00316 * 6 5 4 8 8 H 1.08996 * 109.52778 * 54.92319 * 7 6 5 9 9 C 1.53049 * 109.49419 * 175.00357 * 7 6 5 10 10 C 1.53041 * 109.53444 * 181.31406 * 9 7 6 11 11 C 1.53188 * 109.31266 * 298.63539 * 10 9 7 12 12 N 1.46926 * 108.77834 * 54.63692 * 11 10 9 13 13 C 1.36933 * 120.63263 * 126.37312 * 12 11 10 14 14 H 1.08007 * 119.99998 * 332.44896 * 13 12 11 15 15 C 1.38810 * 120.00289 * 152.18092 * 13 12 11 16 16 N 1.31615 * 119.99831 * 343.15131 * 15 13 12 17 17 Si 1.86800 * 120.00046 * 163.15229 * 15 13 12 18 18 H 1.48494 * 109.47093 * 0.02562 * 17 15 13 19 19 H 1.48499 * 109.46909 * 120.00045 * 17 15 13 20 20 H 1.48499 * 109.47179 * 239.99913 * 17 15 13 21 21 C 1.46919 * 118.73504 * 306.63930 * 12 11 10 22 22 C 1.46854 * 111.19802 * 61.74119 * 5 4 3 23 23 C 1.53042 * 109.51913 * 298.26075 * 22 5 4 24 24 H 1.08993 * 109.47192 * 59.99892 * 1 2 3 25 25 H 1.08996 * 109.46722 * 179.97438 * 1 2 3 26 26 H 1.09003 * 109.46672 * 299.99639 * 1 2 3 27 27 H 1.08994 * 109.51978 * 239.87678 * 2 1 3 28 28 H 1.09006 * 109.50361 * 57.61760 * 3 2 1 29 29 H 1.08999 * 109.53780 * 297.52163 * 3 2 1 30 30 H 1.09002 * 109.46663 * 180.80126 * 4 3 2 31 31 H 1.09003 * 109.45110 * 60.83308 * 4 3 2 32 32 H 1.09003 * 109.47004 * 50.00100 * 6 5 4 33 33 H 1.09003 * 109.47061 * 290.00293 * 6 5 4 34 34 H 1.08999 * 109.46064 * 61.29962 * 9 7 6 35 35 H 1.08998 * 109.45894 * 301.33469 * 9 7 6 36 36 H 1.08994 * 109.49781 * 178.68281 * 10 9 7 37 37 H 1.08999 * 109.49635 * 58.58334 * 10 9 7 38 38 H 1.09002 * 109.58586 * 294.84582 * 11 10 9 39 39 H 1.09003 * 109.58579 * 174.42321 * 11 10 9 40 40 H 0.97000 * 120.00217 * 180.02562 * 16 15 13 41 41 H 1.09007 * 109.58704 * 173.14472 * 21 12 11 42 42 H 1.09003 * 109.59490 * 293.56909 * 21 12 11 43 43 H 1.08998 * 109.45872 * 58.27241 * 22 5 4 44 44 H 1.08996 * 109.46789 * 178.24318 * 22 5 4 45 45 H 1.08993 * 109.50434 * 299.23103 * 23 22 5 46 46 H 1.09001 * 109.53272 * 179.13788 * 23 22 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0417 1.4432 0.0000 4 6 3.5708 1.4371 0.0615 5 7 4.0103 0.7431 1.2786 6 6 5.4671 0.8379 1.4420 7 6 5.8589 0.3280 2.8302 8 1 5.4700 -0.6804 2.9711 9 6 7.3841 0.3094 2.9558 10 6 7.7778 -0.2314 4.3323 11 6 7.2143 0.6900 5.4187 12 7 5.7657 0.8287 5.2166 13 6 4.8906 0.5647 6.2362 14 1 5.1598 -0.1384 7.0105 15 6 3.6596 1.2049 6.2776 16 7 3.4557 2.2864 5.5557 17 14 2.2925 0.5315 7.3579 18 1 2.7725 -0.6835 8.0638 19 1 1.8977 1.5590 8.3546 20 1 1.1207 0.1842 6.5144 21 6 5.2736 1.2504 3.8980 22 6 3.5709 -0.6582 1.2789 23 6 2.0417 -0.7146 1.2537 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3632 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8901 27 1 1.8942 -0.5156 -0.8886 28 1 1.6447 1.9701 0.8677 29 1 1.7161 1.9454 -0.9110 30 1 3.9378 2.4634 0.0760 31 1 3.9673 0.9221 -0.8135 32 1 5.7777 1.8773 1.3356 33 1 5.9583 0.2322 0.6804 34 1 7.7704 1.3220 2.8395 35 1 7.8045 -0.3308 2.1802 36 1 8.8642 -0.2663 4.4123 37 1 7.3707 -1.2345 4.4590 38 1 7.6884 1.6691 5.3494 39 1 7.4065 0.2573 6.4005 40 1 2.5957 2.7340 5.5849 41 1 4.1856 1.1874 3.8768 42 1 5.5861 2.2761 3.7021 43 1 3.9675 -1.1632 0.3982 44 1 3.9379 -1.1538 2.1777 45 1 1.6447 -0.2218 2.1412 46 1 1.7156 -1.7545 1.2385 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000154724195.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:59:26 Heat of formation + Delta-G solvation = -15.759176 kcal Electronic energy + Delta-G solvation = -21995.802685 eV Core-core repulsion = 19111.967393 eV Total energy + Delta-G solvation = -2883.835292 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 266.205 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.40453 -38.96320 -35.97527 -34.73590 -32.60522 -31.76330 -31.48238 -28.92485 -27.15860 -25.74963 -24.19533 -23.77149 -22.96449 -21.72392 -20.53737 -20.40982 -18.61218 -16.89454 -16.85673 -16.03916 -15.75688 -15.58386 -15.32338 -15.17602 -14.92726 -14.78187 -14.39472 -14.18614 -13.85989 -13.60013 -13.25691 -13.15613 -12.90281 -12.79796 -12.70841 -12.54847 -12.38514 -12.16414 -12.09940 -11.94110 -11.67385 -11.57801 -11.51165 -11.19764 -11.08289 -10.96978 -10.87017 -10.47000 -9.03083 -8.60007 -7.79717 -5.25743 1.44402 1.46159 1.56368 2.53289 3.03933 3.32757 3.71688 3.87005 3.90076 3.92435 4.09350 4.19859 4.27777 4.30662 4.37053 4.45910 4.50912 4.56193 4.64826 4.75839 4.77120 4.81753 4.84244 4.89643 4.91815 4.96268 4.98739 5.02930 5.10705 5.16184 5.18119 5.25858 5.27928 5.33190 5.35124 5.45699 5.49171 5.58039 5.64723 5.78905 6.01772 6.31183 6.37417 6.48359 7.22259 7.95590 8.46507 9.24623 Molecular weight = 266.21amu Principal moments of inertia in cm(-1) A = 0.014298 B = 0.007697 C = 0.005544 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1957.817452 B = 3636.704978 C = 5049.466948 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.087 4.087 3 C -0.109 4.109 4 C 0.059 3.941 5 N -0.555 5.555 6 C 0.078 3.922 7 C -0.099 4.099 8 H 0.052 0.948 9 C -0.100 4.100 10 C -0.122 4.122 11 C 0.137 3.863 12 N -0.616 5.616 13 C -0.265 4.265 14 H 0.061 0.939 15 C -0.045 4.045 16 N -0.924 5.924 17 Si 0.959 3.041 18 H -0.268 1.268 19 H -0.292 1.292 20 H -0.291 1.291 21 C 0.203 3.797 22 C 0.061 3.939 23 C -0.110 4.110 24 H 0.068 0.932 25 H 0.061 0.939 26 H 0.040 0.960 27 H 0.079 0.921 28 H 0.045 0.955 29 H 0.085 0.915 30 H 0.068 0.932 31 H 0.042 0.958 32 H 0.064 0.936 33 H 0.045 0.955 34 H 0.053 0.947 35 H 0.075 0.925 36 H 0.082 0.918 37 H 0.051 0.949 38 H 0.009 0.991 39 H 0.048 0.952 40 H 0.247 0.753 41 H 0.064 0.936 42 H -0.023 1.023 43 H 0.042 0.958 44 H 0.056 0.944 45 H 0.039 0.961 46 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.690 -5.679 -14.276 15.379 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.105 4.105 3 C -0.147 4.147 4 C -0.068 4.068 5 N -0.280 5.280 6 C -0.050 4.050 7 C -0.119 4.119 8 H 0.070 0.930 9 C -0.138 4.138 10 C -0.161 4.161 11 C 0.011 3.989 12 N -0.339 5.339 13 C -0.395 4.395 14 H 0.078 0.922 15 C -0.241 4.241 16 N -0.569 5.569 17 Si 0.787 3.213 18 H -0.192 1.192 19 H -0.219 1.219 20 H -0.217 1.217 21 C 0.078 3.922 22 C -0.066 4.066 23 C -0.148 4.148 24 H 0.087 0.913 25 H 0.080 0.920 26 H 0.059 0.941 27 H 0.098 0.902 28 H 0.064 0.936 29 H 0.104 0.896 30 H 0.086 0.914 31 H 0.060 0.940 32 H 0.083 0.917 33 H 0.063 0.937 34 H 0.072 0.928 35 H 0.094 0.906 36 H 0.101 0.899 37 H 0.070 0.930 38 H 0.027 0.973 39 H 0.067 0.933 40 H 0.056 0.944 41 H 0.082 0.918 42 H -0.005 1.005 43 H 0.060 0.940 44 H 0.074 0.926 45 H 0.058 0.942 46 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 0.342 -5.347 -13.862 14.861 hybrid contribution -0.454 -0.181 0.422 0.645 sum -0.111 -5.528 -13.440 14.533 Atomic orbital electron populations 1.21781 0.94403 1.02054 1.01710 1.21144 0.96206 0.95691 0.97480 1.21634 0.94330 0.96890 1.01820 1.22068 0.96246 0.98553 0.89935 1.61731 1.12967 1.14736 1.38536 1.21959 0.86940 1.00524 0.95621 1.21611 0.96029 0.99420 0.94868 0.92996 1.21409 0.94486 1.00796 0.97131 1.21871 1.00259 0.98727 0.95240 1.21084 0.84424 0.96109 0.97273 1.44431 1.00980 1.79764 1.08719 1.19460 0.97532 1.17840 1.04710 0.92167 1.25713 1.01694 0.95922 1.00787 1.70207 1.23088 1.18543 1.45078 0.85339 0.79737 0.77969 0.78226 1.19212 1.21907 1.21742 1.20315 0.98788 0.91166 0.81954 1.22017 0.96039 0.88574 0.99998 1.21625 0.94464 1.00594 0.98155 0.91348 0.91992 0.94077 0.90225 0.93605 0.89650 0.91382 0.93956 0.91712 0.93730 0.92826 0.90644 0.89947 0.93032 0.97314 0.93341 0.94416 0.91765 1.00528 0.94018 0.92567 0.94209 0.90571 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.95 9.20 71.98 0.66 -2.29 16 2 C -0.09 -2.03 2.79 -10.71 -0.03 -2.06 16 3 C -0.11 -2.77 5.38 30.65 0.16 -2.61 16 4 C 0.06 1.63 5.46 86.33 0.47 2.10 16 5 N -0.55 -18.71 4.22 -896.36 -3.78 -22.50 16 6 C 0.08 2.55 4.35 86.30 0.38 2.93 16 7 C -0.10 -3.82 2.25 -10.86 -0.02 -3.85 16 8 H 0.05 2.13 6.22 -2.39 -0.01 2.11 16 9 C -0.10 -3.28 5.17 30.62 0.16 -3.12 16 10 C -0.12 -4.19 6.08 30.67 0.19 -4.00 16 11 C 0.14 5.98 6.52 86.36 0.56 6.55 16 12 N -0.62 -32.73 3.00 -699.92 -2.10 -34.83 16 13 C -0.27 -15.35 9.58 84.03 0.81 -14.55 16 14 H 0.06 3.42 7.88 -2.91 -0.02 3.40 16 15 C -0.05 -2.63 4.92 84.86 0.42 -2.22 16 16 N -0.92 -57.02 11.18 21.65 0.24 -56.78 16 17 Si 0.96 46.87 29.59 68.60 2.03 48.90 16 18 H -0.27 -12.45 7.11 99.48 0.71 -11.74 16 19 H -0.29 -14.19 7.11 99.48 0.71 -13.48 16 20 H -0.29 -14.16 7.11 99.48 0.71 -13.46 16 21 C 0.20 10.29 4.38 86.22 0.38 10.67 16 22 C 0.06 1.91 5.30 86.33 0.46 2.36 16 23 C -0.11 -3.19 5.38 30.65 0.16 -3.03 16 24 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 25 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 26 H 0.04 0.98 8.14 -2.39 -0.02 0.96 16 27 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 28 H 0.05 1.42 8.14 -2.38 -0.02 1.40 16 29 H 0.09 1.72 8.14 -2.39 -0.02 1.71 16 30 H 0.07 1.88 8.02 -2.39 -0.02 1.86 16 31 H 0.04 1.00 8.14 -2.39 -0.02 0.98 16 32 H 0.06 2.16 7.99 -2.39 -0.02 2.14 16 33 H 0.04 1.25 8.12 -2.39 -0.02 1.23 16 34 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 35 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 36 H 0.08 2.28 8.14 -2.39 -0.02 2.26 16 37 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 38 H 0.01 0.40 8.14 -2.39 -0.02 0.38 16 39 H 0.05 2.08 7.93 -2.39 -0.02 2.06 16 40 H 0.25 14.79 8.31 -92.71 -0.77 14.02 16 41 H 0.06 3.73 5.83 -2.38 -0.01 3.71 16 42 H -0.02 -1.30 8.14 -2.39 -0.02 -1.32 16 43 H 0.04 1.12 8.14 -2.39 -0.02 1.10 16 44 H 0.06 2.00 6.12 -2.39 -0.01 1.99 16 45 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 46 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16 Total: -1.00 -66.32 342.76 2.04 -64.29 By element: Atomic # 1 Polarization: 13.13 SS G_CDS: 0.90 Total: 14.03 kcal Atomic # 6 Polarization: -17.86 SS G_CDS: 4.75 Total: -13.11 kcal Atomic # 7 Polarization: -108.46 SS G_CDS: -5.64 Total: -114.11 kcal Atomic # 14 Polarization: 46.87 SS G_CDS: 2.03 Total: 48.90 kcal Total: -66.32 2.04 -64.29 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000154724195.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.529 kcal (2) G-P(sol) polarization free energy of solvation -66.323 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.794 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.035 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.288 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.759 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds