Wall clock time and date at job start Mon Mar 30 2020 00:52:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86800 * 120.00280 * 2 1 4 4 H 1.48502 * 109.47288 * 180.02562 * 3 2 1 5 5 H 1.48491 * 109.47470 * 300.00357 * 3 2 1 6 6 H 1.48503 * 109.46729 * 60.00484 * 3 2 1 7 7 C 1.37880 * 119.99853 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99977 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99967 * 359.97438 * 7 2 1 10 10 C 1.52997 * 109.46989 * 180.02562 * 9 7 2 11 11 N 1.46897 * 109.47068 * 180.02562 * 10 9 7 12 12 C 1.44298 * 111.00137 * 293.95170 * 11 10 9 13 13 C 1.53979 * 108.31423 * 221.34653 * 12 11 10 14 14 C 1.45879 * 112.67027 * 278.59433 * 13 12 11 15 15 C 1.54517 * 111.67014 * 61.49677 * 14 13 12 16 16 H 1.08993 * 109.57577 * 42.71158 * 15 14 13 17 17 N 1.46906 * 109.57227 * 162.95756 * 15 14 13 18 18 C 1.48530 * 110.99918 * 177.59952 * 17 15 14 19 19 C 1.54940 * 103.22772 * 159.72252 * 18 17 15 20 20 C 1.54604 * 102.91923 * 322.58912 * 19 18 17 21 21 C 1.47899 * 110.99831 * 295.00098 * 17 15 14 22 22 C 1.50536 * 108.86312 * 282.76937 * 15 14 13 23 23 C 1.47946 * 110.99963 * 61.36207 * 11 10 9 24 24 H 0.97000 * 119.99510 * 359.97438 * 1 2 3 25 25 H 1.08992 * 109.46967 * 60.00375 * 9 7 2 26 26 H 1.08999 * 109.47161 * 299.99988 * 9 7 2 27 27 H 1.09000 * 109.47601 * 60.00278 * 10 9 7 28 28 H 1.09008 * 109.47383 * 300.00024 * 10 9 7 29 29 H 1.09005 * 109.69472 * 101.64151 * 12 11 10 30 30 H 1.09003 * 109.72736 * 341.07400 * 12 11 10 31 31 H 1.09001 * 108.84745 * 157.77164 * 13 12 11 32 32 H 1.09004 * 108.84272 * 39.41983 * 13 12 11 33 33 H 1.08997 * 109.04016 * 300.93081 * 14 13 12 34 34 H 1.09001 * 108.98079 * 182.02370 * 14 13 12 35 35 H 1.09002 * 110.67228 * 278.15582 * 18 17 15 36 36 H 1.09004 * 110.67104 * 41.28985 * 18 17 15 37 37 H 1.09002 * 110.72702 * 204.23263 * 19 18 17 38 38 H 1.08997 * 110.87867 * 81.01343 * 19 18 17 39 39 H 1.09001 * 110.30354 * 263.04015 * 20 19 18 40 40 H 1.09000 * 110.39036 * 140.91740 * 20 19 18 41 41 H 1.08997 * 109.91760 * 333.50746 * 21 17 15 42 42 H 1.08995 * 109.91931 * 94.80655 * 21 17 15 43 43 H 1.08998 * 108.79191 * 212.64184 * 22 15 14 44 44 H 1.08998 * 108.78757 * 330.86073 * 22 15 14 45 45 H 1.08997 * 108.70888 * 313.18214 * 23 11 10 46 46 H 1.08996 * 108.71251 * 71.32236 * 23 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8905 2.3965 -1.2124 6 1 1.8905 2.3963 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 6 2.2451 -3.6621 -0.0005 11 7 1.5106 -4.9342 -0.0012 12 6 0.7780 -5.1090 1.2297 13 6 0.9226 -6.5760 1.6747 14 6 -0.0009 -7.4674 0.9816 15 6 0.2474 -7.4728 -0.5434 16 1 1.3192 -7.5045 -0.7388 17 7 -0.3970 -8.6490 -1.1429 18 6 -0.2267 -8.6551 -2.6184 19 6 -0.4687 -10.1379 -2.9971 20 6 0.1855 -10.9051 -1.8251 21 6 0.2277 -9.8994 -0.6596 22 6 -0.3390 -6.2195 -1.1364 23 6 0.6727 -5.0620 -1.2137 24 1 -0.4849 0.8401 0.0004 25 1 0.6240 -2.5567 -0.8903 26 1 0.6246 -2.5571 0.8897 27 1 2.8718 -3.6045 0.8894 28 1 2.8719 -3.6044 -0.8906 29 1 -0.2744 -4.8765 1.0669 30 1 1.1852 -4.4505 1.9969 31 1 0.7350 -6.6389 2.7466 32 1 1.9433 -6.9045 1.4783 33 1 -1.0227 -7.1406 1.1744 34 1 0.1270 -8.4793 1.3663 35 1 -0.9665 -8.0110 -3.0938 36 1 0.7833 -8.3485 -2.8904 37 1 0.0229 -10.3806 -3.9392 38 1 -1.5353 -10.3555 -3.0529 39 1 1.1953 -11.2159 -2.0933 40 1 -0.4174 -11.7721 -1.5552 41 1 1.2611 -9.7102 -0.3696 42 1 -0.3333 -10.2909 0.1890 43 1 -0.6967 -6.4409 -2.1420 44 1 -1.1858 -5.9054 -0.5262 45 1 0.1271 -4.1301 -1.3615 46 1 1.3233 -5.2256 -2.0728 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000157119012.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:52:44 Heat of formation + Delta-G solvation = -2.326033 kcal Electronic energy + Delta-G solvation = -21320.412386 eV Core-core repulsion = 18437.159599 eV Total energy + Delta-G solvation = -2883.252787 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 266.205 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.82087 -37.94041 -34.85768 -32.79680 -32.39209 -30.33440 -28.94006 -28.70328 -25.74460 -24.53762 -23.62245 -21.64838 -21.24913 -20.62623 -19.82647 -18.61094 -16.68657 -16.21989 -15.97253 -15.51552 -14.69640 -14.46016 -14.14769 -13.92071 -13.75837 -13.13936 -12.99948 -12.89992 -12.67289 -12.31612 -12.15600 -12.08854 -11.48294 -11.41747 -11.20754 -11.18080 -10.95059 -10.73435 -10.70937 -10.63128 -10.42416 -10.37989 -10.24014 -9.98768 -9.80897 -9.70678 -9.12158 -8.37746 -8.35826 -7.35254 -6.02375 -4.05194 3.29239 3.36873 3.41102 3.93404 4.42536 4.51845 4.55224 4.63047 4.79229 4.99678 5.10662 5.20232 5.33041 5.36638 5.48302 5.48872 5.55462 5.60107 5.64285 5.69540 5.73901 5.84279 5.86985 5.88360 5.96973 6.05150 6.14847 6.22039 6.28466 6.30341 6.34762 6.42849 6.49700 6.58431 6.63926 6.77622 6.91630 6.95210 7.17468 7.56211 7.63349 7.75064 7.98232 8.02269 8.42086 9.02296 9.59070 11.08586 Molecular weight = 266.21amu Principal moments of inertia in cm(-1) A = 0.038917 B = 0.003733 C = 0.003584 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 719.316070 B = 7498.006129 C = 7810.294631 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.057 3.943 3 Si 0.892 3.108 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.519 4.519 8 H 0.056 0.944 9 C -0.010 4.010 10 C 0.061 3.939 11 N -0.551 5.551 12 C 0.066 3.934 13 C -0.114 4.114 14 C -0.101 4.101 15 C 0.088 3.912 16 H 0.054 0.946 17 N -0.518 5.518 18 C 0.034 3.966 19 C -0.123 4.123 20 C -0.132 4.132 21 C 0.037 3.963 22 C -0.115 4.115 23 C 0.056 3.944 24 H 0.260 0.740 25 H 0.019 0.981 26 H 0.015 0.985 27 H 0.061 0.939 28 H 0.058 0.942 29 H 0.041 0.959 30 H 0.067 0.933 31 H 0.056 0.944 32 H 0.064 0.936 33 H 0.060 0.940 34 H 0.055 0.945 35 H 0.082 0.918 36 H 0.045 0.955 37 H 0.068 0.932 38 H 0.072 0.928 39 H 0.064 0.936 40 H 0.068 0.932 41 H 0.044 0.956 42 H 0.075 0.925 43 H 0.068 0.932 44 H 0.062 0.938 45 H 0.053 0.947 46 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.693 -20.042 -2.387 20.196 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.144 4.144 3 Si 0.719 3.281 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.558 4.558 8 H 0.074 0.926 9 C -0.048 4.048 10 C -0.066 4.066 11 N -0.275 5.275 12 C -0.063 4.063 13 C -0.153 4.153 14 C -0.139 4.139 15 C -0.020 4.020 16 H 0.072 0.928 17 N -0.242 5.242 18 C -0.094 4.094 19 C -0.161 4.161 20 C -0.170 4.170 21 C -0.091 4.091 22 C -0.153 4.153 23 C -0.072 4.072 24 H 0.069 0.931 25 H 0.037 0.963 26 H 0.034 0.966 27 H 0.080 0.920 28 H 0.077 0.923 29 H 0.059 0.941 30 H 0.086 0.914 31 H 0.074 0.926 32 H 0.083 0.917 33 H 0.079 0.921 34 H 0.073 0.927 35 H 0.100 0.900 36 H 0.064 0.936 37 H 0.087 0.913 38 H 0.091 0.909 39 H 0.082 0.918 40 H 0.087 0.913 41 H 0.062 0.938 42 H 0.093 0.907 43 H 0.087 0.913 44 H 0.081 0.919 45 H 0.071 0.929 46 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -1.063 -20.268 -2.248 20.420 hybrid contribution 0.655 1.706 -0.157 1.834 sum -0.408 -18.562 -2.406 18.722 Atomic orbital electron populations 1.69976 1.06081 1.26481 1.50869 1.25031 0.94837 0.99305 0.95273 0.86542 0.80160 0.83783 0.77569 1.19689 1.21032 1.21025 1.21212 0.93056 0.90958 1.50530 0.92574 1.19685 0.95006 0.92810 0.97265 1.22338 0.96677 0.86721 1.00840 1.61114 1.29462 1.35585 1.01339 1.21682 0.97137 0.95172 0.92305 1.20506 1.00256 0.95850 0.98686 1.20536 1.00152 0.99350 0.93837 1.21553 0.96687 0.89310 0.94428 0.92798 1.64786 1.53418 1.01698 1.04321 1.23210 1.00284 0.96723 0.89159 1.22469 1.01278 0.94740 0.97663 1.22408 1.00770 0.98379 0.95415 1.22805 0.97864 0.90517 0.97876 1.21500 0.98557 0.93859 1.01401 1.22377 0.94580 0.97293 0.92924 0.93079 0.96276 0.96620 0.92041 0.92322 0.94113 0.91409 0.92577 0.91711 0.92143 0.92666 0.89982 0.93639 0.91341 0.90910 0.91767 0.91287 0.93770 0.90681 0.91311 0.91934 0.92919 0.92154 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.97 13.29 55.43 0.74 -26.24 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 3 Si 0.89 21.73 29.54 -169.99 -5.02 16.71 16 4 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 5 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 6 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 7 C -0.52 -14.68 9.11 -34.44 -0.31 -15.00 16 8 H 0.06 1.55 7.74 -52.48 -0.41 1.14 16 9 C -0.01 -0.24 4.47 -27.88 -0.12 -0.37 16 10 C 0.06 1.28 5.06 -3.83 -0.02 1.27 16 11 N -0.55 -9.96 4.18 -234.64 -0.98 -10.94 16 12 C 0.07 1.13 4.39 -4.70 -0.02 1.11 16 13 C -0.11 -1.59 5.37 -29.59 -0.16 -1.75 16 14 C -0.10 -1.31 4.86 -29.30 -0.14 -1.46 16 15 C 0.09 1.18 1.34 -68.14 -0.09 1.09 16 16 H 0.05 0.80 7.62 -51.93 -0.40 0.40 16 17 N -0.52 -6.21 5.11 -223.02 -1.14 -7.35 16 18 C 0.03 0.36 5.49 -1.90 -0.01 0.35 16 19 C -0.12 -1.08 7.06 -24.86 -0.18 -1.26 16 20 C -0.13 -1.13 6.93 -25.37 -0.18 -1.30 16 21 C 0.04 0.39 5.49 -2.75 -0.02 0.37 16 22 C -0.12 -1.68 4.84 -27.48 -0.13 -1.81 16 23 C 0.06 0.96 5.31 -2.77 -0.01 0.95 16 24 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 25 H 0.02 0.52 6.16 -51.93 -0.32 0.20 16 26 H 0.02 0.43 7.24 -51.93 -0.38 0.05 16 27 H 0.06 1.28 7.92 -51.93 -0.41 0.87 16 28 H 0.06 1.23 8.14 -51.92 -0.42 0.81 16 29 H 0.04 0.74 6.79 -51.93 -0.35 0.38 16 30 H 0.07 1.23 7.25 -51.93 -0.38 0.85 16 31 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 32 H 0.06 0.93 8.08 -51.93 -0.42 0.51 16 33 H 0.06 0.82 7.59 -51.93 -0.39 0.43 16 34 H 0.05 0.66 6.76 -51.93 -0.35 0.30 16 35 H 0.08 0.88 6.99 -51.93 -0.36 0.51 16 36 H 0.05 0.51 8.02 -51.93 -0.42 0.09 16 37 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 39 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 40 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 41 H 0.04 0.47 7.66 -51.93 -0.40 0.08 16 42 H 0.07 0.75 7.88 -51.93 -0.41 0.34 16 43 H 0.07 0.93 5.74 -51.93 -0.30 0.63 16 44 H 0.06 0.97 6.66 -51.93 -0.35 0.62 16 45 H 0.05 1.05 5.73 -51.93 -0.30 0.75 16 46 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 LS Contribution 335.76 15.07 5.06 5.06 Total: -1.00 -29.38 335.76 -11.26 -40.65 By element: Atomic # 1 Polarization: 6.81 SS G_CDS: -8.42 Total: -1.61 kcal Atomic # 6 Polarization: -14.78 SS G_CDS: -1.49 Total: -16.27 kcal Atomic # 7 Polarization: -43.14 SS G_CDS: -1.38 Total: -44.52 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.71 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -29.38 -11.26 -40.65 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000157119012.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.320 kcal (2) G-P(sol) polarization free energy of solvation -29.383 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.937 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.263 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.646 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.326 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds