Wall clock time and date at job start Mon Mar 30 2020 00:52:44
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31511 * 1
3 3 Si 1.86800 * 120.00280 * 2 1
4 4 H 1.48502 * 109.47288 * 180.02562 * 3 2 1
5 5 H 1.48491 * 109.47470 * 300.00357 * 3 2 1
6 6 H 1.48503 * 109.46729 * 60.00484 * 3 2 1
7 7 C 1.37880 * 119.99853 * 180.02562 * 2 1 3
8 8 H 1.08004 * 119.99977 * 179.97438 * 7 2 1
9 9 C 1.50702 * 119.99967 * 359.97438 * 7 2 1
10 10 C 1.52997 * 109.46989 * 180.02562 * 9 7 2
11 11 N 1.46897 * 109.47068 * 180.02562 * 10 9 7
12 12 C 1.44298 * 111.00137 * 293.95170 * 11 10 9
13 13 C 1.53979 * 108.31423 * 221.34653 * 12 11 10
14 14 C 1.45879 * 112.67027 * 278.59433 * 13 12 11
15 15 C 1.54517 * 111.67014 * 61.49677 * 14 13 12
16 16 H 1.08993 * 109.57577 * 42.71158 * 15 14 13
17 17 N 1.46906 * 109.57227 * 162.95756 * 15 14 13
18 18 C 1.48530 * 110.99918 * 177.59952 * 17 15 14
19 19 C 1.54940 * 103.22772 * 159.72252 * 18 17 15
20 20 C 1.54604 * 102.91923 * 322.58912 * 19 18 17
21 21 C 1.47899 * 110.99831 * 295.00098 * 17 15 14
22 22 C 1.50536 * 108.86312 * 282.76937 * 15 14 13
23 23 C 1.47946 * 110.99963 * 61.36207 * 11 10 9
24 24 H 0.97000 * 119.99510 * 359.97438 * 1 2 3
25 25 H 1.08992 * 109.46967 * 60.00375 * 9 7 2
26 26 H 1.08999 * 109.47161 * 299.99988 * 9 7 2
27 27 H 1.09000 * 109.47601 * 60.00278 * 10 9 7
28 28 H 1.09008 * 109.47383 * 300.00024 * 10 9 7
29 29 H 1.09005 * 109.69472 * 101.64151 * 12 11 10
30 30 H 1.09003 * 109.72736 * 341.07400 * 12 11 10
31 31 H 1.09001 * 108.84745 * 157.77164 * 13 12 11
32 32 H 1.09004 * 108.84272 * 39.41983 * 13 12 11
33 33 H 1.08997 * 109.04016 * 300.93081 * 14 13 12
34 34 H 1.09001 * 108.98079 * 182.02370 * 14 13 12
35 35 H 1.09002 * 110.67228 * 278.15582 * 18 17 15
36 36 H 1.09004 * 110.67104 * 41.28985 * 18 17 15
37 37 H 1.09002 * 110.72702 * 204.23263 * 19 18 17
38 38 H 1.08997 * 110.87867 * 81.01343 * 19 18 17
39 39 H 1.09001 * 110.30354 * 263.04015 * 20 19 18
40 40 H 1.09000 * 110.39036 * 140.91740 * 20 19 18
41 41 H 1.08997 * 109.91760 * 333.50746 * 21 17 15
42 42 H 1.08995 * 109.91931 * 94.80655 * 21 17 15
43 43 H 1.08998 * 108.79191 * 212.64184 * 22 15 14
44 44 H 1.08998 * 108.78757 * 330.86073 * 22 15 14
45 45 H 1.08997 * 108.70888 * 313.18214 * 23 11 10
46 46 H 1.08996 * 108.71251 * 71.32236 * 23 11 10
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3151 0.0000 0.0000
3 14 2.2492 1.6177 0.0000
4 1 3.7092 1.3463 -0.0006
5 1 1.8905 2.3965 -1.2124
6 1 1.8905 2.3963 1.2126
7 6 2.0045 -1.1941 -0.0005
8 1 3.0845 -1.1941 -0.0010
9 6 1.2509 -2.4992 -0.0005
10 6 2.2451 -3.6621 -0.0005
11 7 1.5106 -4.9342 -0.0012
12 6 0.7780 -5.1090 1.2297
13 6 0.9226 -6.5760 1.6747
14 6 -0.0009 -7.4674 0.9816
15 6 0.2474 -7.4728 -0.5434
16 1 1.3192 -7.5045 -0.7388
17 7 -0.3970 -8.6490 -1.1429
18 6 -0.2267 -8.6551 -2.6184
19 6 -0.4687 -10.1379 -2.9971
20 6 0.1855 -10.9051 -1.8251
21 6 0.2277 -9.8994 -0.6596
22 6 -0.3390 -6.2195 -1.1364
23 6 0.6727 -5.0620 -1.2137
24 1 -0.4849 0.8401 0.0004
25 1 0.6240 -2.5567 -0.8903
26 1 0.6246 -2.5571 0.8897
27 1 2.8718 -3.6045 0.8894
28 1 2.8719 -3.6044 -0.8906
29 1 -0.2744 -4.8765 1.0669
30 1 1.1852 -4.4505 1.9969
31 1 0.7350 -6.6389 2.7466
32 1 1.9433 -6.9045 1.4783
33 1 -1.0227 -7.1406 1.1744
34 1 0.1270 -8.4793 1.3663
35 1 -0.9665 -8.0110 -3.0938
36 1 0.7833 -8.3485 -2.8904
37 1 0.0229 -10.3806 -3.9392
38 1 -1.5353 -10.3555 -3.0529
39 1 1.1953 -11.2159 -2.0933
40 1 -0.4174 -11.7721 -1.5552
41 1 1.2611 -9.7102 -0.3696
42 1 -0.3333 -10.2909 0.1890
43 1 -0.6967 -6.4409 -2.1420
44 1 -1.1858 -5.9054 -0.5262
45 1 0.1271 -4.1301 -1.3615
46 1 1.3233 -5.2256 -2.0728
RHF calculation, no. of doubly occupied orbitals= 52
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000157119012.mol2 46
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 00:52:44
Heat of formation + Delta-G solvation = -2.326033 kcal
Electronic energy + Delta-G solvation = -21320.412386 eV
Core-core repulsion = 18437.159599 eV
Total energy + Delta-G solvation = -2883.252787 eV
No. of doubly occupied orbitals = 52
Molecular weight
(most abundant/longest-lived isotopes) = 266.205 amu
Computer time = 0.48 seconds
Orbital eigenvalues (eV)
-39.82087 -37.94041 -34.85768 -32.79680 -32.39209 -30.33440 -28.94006 -28.70328
-25.74460 -24.53762 -23.62245 -21.64838 -21.24913 -20.62623 -19.82647 -18.61094
-16.68657 -16.21989 -15.97253 -15.51552 -14.69640 -14.46016 -14.14769 -13.92071
-13.75837 -13.13936 -12.99948 -12.89992 -12.67289 -12.31612 -12.15600 -12.08854
-11.48294 -11.41747 -11.20754 -11.18080 -10.95059 -10.73435 -10.70937 -10.63128
-10.42416 -10.37989 -10.24014 -9.98768 -9.80897 -9.70678 -9.12158 -8.37746
-8.35826 -7.35254 -6.02375 -4.05194 3.29239 3.36873 3.41102 3.93404
4.42536 4.51845 4.55224 4.63047 4.79229 4.99678 5.10662 5.20232
5.33041 5.36638 5.48302 5.48872 5.55462 5.60107 5.64285 5.69540
5.73901 5.84279 5.86985 5.88360 5.96973 6.05150 6.14847 6.22039
6.28466 6.30341 6.34762 6.42849 6.49700 6.58431 6.63926 6.77622
6.91630 6.95210 7.17468 7.56211 7.63349 7.75064 7.98232 8.02269
8.42086 9.02296 9.59070 11.08586
Molecular weight = 266.21amu
Principal moments of inertia in cm(-1)
A = 0.038917 B = 0.003733 C = 0.003584
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 719.316070 B = 7498.006129 C = 7810.294631
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.895 5.895
2 C 0.057 3.943
3 Si 0.892 3.108
4 H -0.272 1.272
5 H -0.284 1.284
6 H -0.284 1.284
7 C -0.519 4.519
8 H 0.056 0.944
9 C -0.010 4.010
10 C 0.061 3.939
11 N -0.551 5.551
12 C 0.066 3.934
13 C -0.114 4.114
14 C -0.101 4.101
15 C 0.088 3.912
16 H 0.054 0.946
17 N -0.518 5.518
18 C 0.034 3.966
19 C -0.123 4.123
20 C -0.132 4.132
21 C 0.037 3.963
22 C -0.115 4.115
23 C 0.056 3.944
24 H 0.260 0.740
25 H 0.019 0.981
26 H 0.015 0.985
27 H 0.061 0.939
28 H 0.058 0.942
29 H 0.041 0.959
30 H 0.067 0.933
31 H 0.056 0.944
32 H 0.064 0.936
33 H 0.060 0.940
34 H 0.055 0.945
35 H 0.082 0.918
36 H 0.045 0.955
37 H 0.068 0.932
38 H 0.072 0.928
39 H 0.064 0.936
40 H 0.068 0.932
41 H 0.044 0.956
42 H 0.075 0.925
43 H 0.068 0.932
44 H 0.062 0.938
45 H 0.053 0.947
46 H 0.060 0.940
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -0.693 -20.042 -2.387 20.196
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.534 5.534
2 C -0.144 4.144
3 Si 0.719 3.281
4 H -0.197 1.197
5 H -0.210 1.210
6 H -0.210 1.210
7 C -0.558 4.558
8 H 0.074 0.926
9 C -0.048 4.048
10 C -0.066 4.066
11 N -0.275 5.275
12 C -0.063 4.063
13 C -0.153 4.153
14 C -0.139 4.139
15 C -0.020 4.020
16 H 0.072 0.928
17 N -0.242 5.242
18 C -0.094 4.094
19 C -0.161 4.161
20 C -0.170 4.170
21 C -0.091 4.091
22 C -0.153 4.153
23 C -0.072 4.072
24 H 0.069 0.931
25 H 0.037 0.963
26 H 0.034 0.966
27 H 0.080 0.920
28 H 0.077 0.923
29 H 0.059 0.941
30 H 0.086 0.914
31 H 0.074 0.926
32 H 0.083 0.917
33 H 0.079 0.921
34 H 0.073 0.927
35 H 0.100 0.900
36 H 0.064 0.936
37 H 0.087 0.913
38 H 0.091 0.909
39 H 0.082 0.918
40 H 0.087 0.913
41 H 0.062 0.938
42 H 0.093 0.907
43 H 0.087 0.913
44 H 0.081 0.919
45 H 0.071 0.929
46 H 0.078 0.922
Dipole moment (debyes) X Y Z Total
from point charges -1.063 -20.268 -2.248 20.420
hybrid contribution 0.655 1.706 -0.157 1.834
sum -0.408 -18.562 -2.406 18.722
Atomic orbital electron populations
1.69976 1.06081 1.26481 1.50869 1.25031 0.94837 0.99305 0.95273
0.86542 0.80160 0.83783 0.77569 1.19689 1.21032 1.21025 1.21212
0.93056 0.90958 1.50530 0.92574 1.19685 0.95006 0.92810 0.97265
1.22338 0.96677 0.86721 1.00840 1.61114 1.29462 1.35585 1.01339
1.21682 0.97137 0.95172 0.92305 1.20506 1.00256 0.95850 0.98686
1.20536 1.00152 0.99350 0.93837 1.21553 0.96687 0.89310 0.94428
0.92798 1.64786 1.53418 1.01698 1.04321 1.23210 1.00284 0.96723
0.89159 1.22469 1.01278 0.94740 0.97663 1.22408 1.00770 0.98379
0.95415 1.22805 0.97864 0.90517 0.97876 1.21500 0.98557 0.93859
1.01401 1.22377 0.94580 0.97293 0.92924 0.93079 0.96276 0.96620
0.92041 0.92322 0.94113 0.91409 0.92577 0.91711 0.92143 0.92666
0.89982 0.93639 0.91341 0.90910 0.91767 0.91287 0.93770 0.90681
0.91311 0.91934 0.92919 0.92154
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.89 -26.97 13.29 55.43 0.74 -26.24 16
2 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16
3 Si 0.89 21.73 29.54 -169.99 -5.02 16.71 16
4 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16
5 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16
6 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16
7 C -0.52 -14.68 9.11 -34.44 -0.31 -15.00 16
8 H 0.06 1.55 7.74 -52.48 -0.41 1.14 16
9 C -0.01 -0.24 4.47 -27.88 -0.12 -0.37 16
10 C 0.06 1.28 5.06 -3.83 -0.02 1.27 16
11 N -0.55 -9.96 4.18 -234.64 -0.98 -10.94 16
12 C 0.07 1.13 4.39 -4.70 -0.02 1.11 16
13 C -0.11 -1.59 5.37 -29.59 -0.16 -1.75 16
14 C -0.10 -1.31 4.86 -29.30 -0.14 -1.46 16
15 C 0.09 1.18 1.34 -68.14 -0.09 1.09 16
16 H 0.05 0.80 7.62 -51.93 -0.40 0.40 16
17 N -0.52 -6.21 5.11 -223.02 -1.14 -7.35 16
18 C 0.03 0.36 5.49 -1.90 -0.01 0.35 16
19 C -0.12 -1.08 7.06 -24.86 -0.18 -1.26 16
20 C -0.13 -1.13 6.93 -25.37 -0.18 -1.30 16
21 C 0.04 0.39 5.49 -2.75 -0.02 0.37 16
22 C -0.12 -1.68 4.84 -27.48 -0.13 -1.81 16
23 C 0.06 0.96 5.31 -2.77 -0.01 0.95 16
24 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16
25 H 0.02 0.52 6.16 -51.93 -0.32 0.20 16
26 H 0.02 0.43 7.24 -51.93 -0.38 0.05 16
27 H 0.06 1.28 7.92 -51.93 -0.41 0.87 16
28 H 0.06 1.23 8.14 -51.92 -0.42 0.81 16
29 H 0.04 0.74 6.79 -51.93 -0.35 0.38 16
30 H 0.07 1.23 7.25 -51.93 -0.38 0.85 16
31 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16
32 H 0.06 0.93 8.08 -51.93 -0.42 0.51 16
33 H 0.06 0.82 7.59 -51.93 -0.39 0.43 16
34 H 0.05 0.66 6.76 -51.93 -0.35 0.30 16
35 H 0.08 0.88 6.99 -51.93 -0.36 0.51 16
36 H 0.05 0.51 8.02 -51.93 -0.42 0.09 16
37 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16
38 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16
39 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16
40 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16
41 H 0.04 0.47 7.66 -51.93 -0.40 0.08 16
42 H 0.07 0.75 7.88 -51.93 -0.41 0.34 16
43 H 0.07 0.93 5.74 -51.93 -0.30 0.63 16
44 H 0.06 0.97 6.66 -51.93 -0.35 0.62 16
45 H 0.05 1.05 5.73 -51.93 -0.30 0.75 16
46 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16
LS Contribution 335.76 15.07 5.06 5.06
Total: -1.00 -29.38 335.76 -11.26 -40.65
By element:
Atomic # 1 Polarization: 6.81 SS G_CDS: -8.42 Total: -1.61 kcal
Atomic # 6 Polarization: -14.78 SS G_CDS: -1.49 Total: -16.27 kcal
Atomic # 7 Polarization: -43.14 SS G_CDS: -1.38 Total: -44.52 kcal
Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.71 kcal
Total LS contribution 5.06 Total: 5.06 kcal
Total: -29.38 -11.26 -40.65 kcal
The number of atoms in the molecule is 46
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000157119012.mol2 46
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 38.320 kcal
(2) G-P(sol) polarization free energy of solvation -29.383 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.937 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.263 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.646 kcal
(6) G-S(sol) free energy of system = (1) + (5) -2.326 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.48 seconds