Wall clock time and date at job start Mon Mar 30 2020 00:52:43
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31511 * 1
3 3 Si 1.86800 * 120.00280 * 2 1
4 4 H 1.48502 * 109.47288 * 180.02562 * 3 2 1
5 5 H 1.48491 * 109.47470 * 300.00357 * 3 2 1
6 6 H 1.48503 * 109.46729 * 60.00484 * 3 2 1
7 7 C 1.37880 * 119.99853 * 180.02562 * 2 1 3
8 8 H 1.08004 * 119.99977 * 179.97438 * 7 2 1
9 9 C 1.50702 * 119.99967 * 359.97438 * 7 2 1
10 10 C 1.52997 * 109.46989 * 180.02562 * 9 7 2
11 11 N 1.46897 * 109.47068 * 180.02562 * 10 9 7
12 12 C 1.44298 * 111.00137 * 293.95170 * 11 10 9
13 13 C 1.53979 * 108.31423 * 221.34653 * 12 11 10
14 14 C 1.45879 * 112.67027 * 278.59433 * 13 12 11
15 15 C 1.54517 * 111.67014 * 61.49677 * 14 13 12
16 16 H 1.08993 * 109.57577 * 42.71158 * 15 14 13
17 17 N 1.46906 * 109.57227 * 162.95756 * 15 14 13
18 18 C 1.48530 * 110.99918 * 177.59952 * 17 15 14
19 19 C 1.54940 * 103.22772 * 159.72252 * 18 17 15
20 20 C 1.54604 * 102.91923 * 322.58912 * 19 18 17
21 21 C 1.47899 * 110.99831 * 295.00098 * 17 15 14
22 22 C 1.50536 * 108.86312 * 282.76937 * 15 14 13
23 23 C 1.47946 * 110.99963 * 61.36207 * 11 10 9
24 24 H 0.97000 * 119.99510 * 359.97438 * 1 2 3
25 25 H 1.08992 * 109.46967 * 60.00375 * 9 7 2
26 26 H 1.08999 * 109.47161 * 299.99988 * 9 7 2
27 27 H 1.09000 * 109.47601 * 60.00278 * 10 9 7
28 28 H 1.09008 * 109.47383 * 300.00024 * 10 9 7
29 29 H 1.09005 * 109.69472 * 101.64151 * 12 11 10
30 30 H 1.09003 * 109.72736 * 341.07400 * 12 11 10
31 31 H 1.09001 * 108.84745 * 157.77164 * 13 12 11
32 32 H 1.09004 * 108.84272 * 39.41983 * 13 12 11
33 33 H 1.08997 * 109.04016 * 300.93081 * 14 13 12
34 34 H 1.09001 * 108.98079 * 182.02370 * 14 13 12
35 35 H 1.09002 * 110.67228 * 278.15582 * 18 17 15
36 36 H 1.09004 * 110.67104 * 41.28985 * 18 17 15
37 37 H 1.09002 * 110.72702 * 204.23263 * 19 18 17
38 38 H 1.08997 * 110.87867 * 81.01343 * 19 18 17
39 39 H 1.09001 * 110.30354 * 263.04015 * 20 19 18
40 40 H 1.09000 * 110.39036 * 140.91740 * 20 19 18
41 41 H 1.08997 * 109.91760 * 333.50746 * 21 17 15
42 42 H 1.08995 * 109.91931 * 94.80655 * 21 17 15
43 43 H 1.08998 * 108.79191 * 212.64184 * 22 15 14
44 44 H 1.08998 * 108.78757 * 330.86073 * 22 15 14
45 45 H 1.08997 * 108.70888 * 313.18214 * 23 11 10
46 46 H 1.08996 * 108.71251 * 71.32236 * 23 11 10
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3151 0.0000 0.0000
3 14 2.2492 1.6177 0.0000
4 1 3.7092 1.3463 -0.0006
5 1 1.8905 2.3965 -1.2124
6 1 1.8905 2.3963 1.2126
7 6 2.0045 -1.1941 -0.0005
8 1 3.0845 -1.1941 -0.0010
9 6 1.2509 -2.4992 -0.0005
10 6 2.2451 -3.6621 -0.0005
11 7 1.5106 -4.9342 -0.0012
12 6 0.7780 -5.1090 1.2297
13 6 0.9226 -6.5760 1.6747
14 6 -0.0009 -7.4674 0.9816
15 6 0.2474 -7.4728 -0.5434
16 1 1.3192 -7.5045 -0.7388
17 7 -0.3970 -8.6490 -1.1429
18 6 -0.2267 -8.6551 -2.6184
19 6 -0.4687 -10.1379 -2.9971
20 6 0.1855 -10.9051 -1.8251
21 6 0.2277 -9.8994 -0.6596
22 6 -0.3390 -6.2195 -1.1364
23 6 0.6727 -5.0620 -1.2137
24 1 -0.4849 0.8401 0.0004
25 1 0.6240 -2.5567 -0.8903
26 1 0.6246 -2.5571 0.8897
27 1 2.8718 -3.6045 0.8894
28 1 2.8719 -3.6044 -0.8906
29 1 -0.2744 -4.8765 1.0669
30 1 1.1852 -4.4505 1.9969
31 1 0.7350 -6.6389 2.7466
32 1 1.9433 -6.9045 1.4783
33 1 -1.0227 -7.1406 1.1744
34 1 0.1270 -8.4793 1.3663
35 1 -0.9665 -8.0110 -3.0938
36 1 0.7833 -8.3485 -2.8904
37 1 0.0229 -10.3806 -3.9392
38 1 -1.5353 -10.3555 -3.0529
39 1 1.1953 -11.2159 -2.0933
40 1 -0.4174 -11.7721 -1.5552
41 1 1.2611 -9.7102 -0.3696
42 1 -0.3333 -10.2909 0.1890
43 1 -0.6967 -6.4409 -2.1420
44 1 -1.1858 -5.9054 -0.5262
45 1 0.1271 -4.1301 -1.3615
46 1 1.3233 -5.2256 -2.0728
RHF calculation, no. of doubly occupied orbitals= 52
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000157119012.mol2 46
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 00:52:43
Heat of formation + Delta-G solvation = -20.495416 kcal
Electronic energy + Delta-G solvation = -21321.200270 eV
Core-core repulsion = 18437.159599 eV
Total energy + Delta-G solvation = -2884.040671 eV
No. of doubly occupied orbitals = 52
Molecular weight
(most abundant/longest-lived isotopes) = 266.205 amu
Computer time = 0.54 seconds
Orbital eigenvalues (eV)
-40.93427 -39.14628 -36.26715 -34.76460 -33.57970 -31.78517 -30.22435 -29.76890
-27.33766 -25.80857 -25.35792 -23.14034 -22.27245 -21.63017 -20.88569 -20.04411
-18.66067 -17.47265 -17.02662 -16.65079 -16.56503 -15.87414 -15.54108 -15.21031
-14.76440 -14.66016 -14.32247 -14.14453 -14.00780 -13.60991 -13.48551 -13.35621
-13.07600 -12.87486 -12.62754 -12.36782 -12.20111 -12.14841 -11.97287 -11.87454
-11.73094 -11.66674 -11.55349 -11.40745 -11.33095 -11.26369 -11.07669 -10.57562
-9.31287 -8.97934 -8.22686 -6.35172 1.37596 1.37791 1.51471 2.37881
2.98915 3.09312 3.10624 3.70970 3.76857 3.81960 4.02579 4.14696
4.17549 4.22043 4.24387 4.41694 4.46990 4.54459 4.60723 4.65121
4.68565 4.76082 4.83867 4.86455 4.89411 4.94699 5.01816 5.02508
5.06877 5.10869 5.17483 5.20395 5.21961 5.26407 5.36335 5.38646
5.45638 5.51155 5.58384 5.73532 6.02130 6.06842 6.19641 6.34029
6.44575 6.82695 7.34285 8.88109
Molecular weight = 266.21amu
Principal moments of inertia in cm(-1)
A = 0.038917 B = 0.003733 C = 0.003584
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 719.316070 B = 7498.006129 C = 7810.294631
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.933 5.933
2 C -0.001 4.001
3 Si 0.966 3.034
4 H -0.260 1.260
5 H -0.279 1.279
6 H -0.278 1.278
7 C -0.541 4.541
8 H 0.062 0.938
9 C 0.002 3.998
10 C 0.075 3.925
11 N -0.540 5.540
12 C 0.064 3.936
13 C -0.102 4.102
14 C -0.098 4.098
15 C 0.097 3.903
16 H 0.043 0.957
17 N -0.526 5.526
18 C 0.028 3.972
19 C -0.119 4.119
20 C -0.128 4.128
21 C 0.034 3.966
22 C -0.105 4.105
23 C 0.059 3.941
24 H 0.263 0.737
25 H -0.006 1.006
26 H -0.012 1.012
27 H 0.065 0.935
28 H 0.061 0.939
29 H 0.024 0.976
30 H 0.053 0.947
31 H 0.074 0.926
32 H 0.066 0.934
33 H 0.054 0.946
34 H 0.074 0.926
35 H 0.078 0.922
36 H 0.040 0.960
37 H 0.082 0.918
38 H 0.074 0.926
39 H 0.072 0.928
40 H 0.081 0.919
41 H 0.040 0.960
42 H 0.080 0.920
43 H 0.080 0.920
44 H 0.050 0.950
45 H 0.018 0.982
46 H 0.067 0.933
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 0.253 -21.471 -2.465 21.613
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.573 5.573
2 C -0.198 4.198
3 Si 0.790 3.210
4 H -0.184 1.184
5 H -0.204 1.204
6 H -0.204 1.204
7 C -0.580 4.580
8 H 0.080 0.920
9 C -0.037 4.037
10 C -0.053 4.053
11 N -0.263 5.263
12 C -0.065 4.065
13 C -0.140 4.140
14 C -0.136 4.136
15 C -0.011 4.011
16 H 0.061 0.939
17 N -0.251 5.251
18 C -0.099 4.099
19 C -0.157 4.157
20 C -0.166 4.166
21 C -0.094 4.094
22 C -0.143 4.143
23 C -0.069 4.069
24 H 0.072 0.928
25 H 0.012 0.988
26 H 0.006 0.994
27 H 0.084 0.916
28 H 0.079 0.921
29 H 0.042 0.958
30 H 0.072 0.928
31 H 0.093 0.907
32 H 0.085 0.915
33 H 0.072 0.928
34 H 0.093 0.907
35 H 0.097 0.903
36 H 0.058 0.942
37 H 0.101 0.899
38 H 0.093 0.907
39 H 0.091 0.909
40 H 0.100 0.900
41 H 0.059 0.941
42 H 0.098 0.902
43 H 0.098 0.902
44 H 0.069 0.931
45 H 0.037 0.963
46 H 0.086 0.914
Dipole moment (debyes) X Y Z Total
from point charges -0.113 -21.723 -2.326 21.847
hybrid contribution 0.311 2.136 -0.147 2.163
sum 0.198 -19.587 -2.472 19.744
Atomic orbital electron populations
1.70113 1.07873 1.27666 1.51697 1.25996 0.95748 1.03446 0.94648
0.85383 0.79167 0.78667 0.77744 1.18409 1.20422 1.20402 1.21656
0.93592 0.92227 1.50486 0.92007 1.19539 0.95167 0.94308 0.94657
1.22101 0.95757 0.86321 1.01071 1.61237 1.29753 1.33195 1.02135
1.21756 0.95798 0.97492 0.91433 1.20397 1.00619 0.93185 0.99825
1.20502 0.99438 1.00071 0.93571 1.21378 0.95842 0.89257 0.94662
0.93936 1.64783 1.53446 1.01759 1.05075 1.23275 0.99859 0.98317
0.88457 1.22462 1.01674 0.93075 0.98448 1.22410 1.01551 0.98195
0.94424 1.22881 0.97546 0.90087 0.98838 1.21400 0.97224 0.93621
1.02091 1.22371 0.94776 0.96929 0.92785 0.92841 0.98815 0.99366
0.91616 0.92064 0.95756 0.92801 0.90748 0.91526 0.92758 0.90737
0.90324 0.94204 0.89927 0.90693 0.90942 0.90006 0.94123 0.90179
0.90185 0.93133 0.96327 0.91414
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.93 -57.61 13.29 21.45 0.28 -57.33 16
2 C 0.00 -0.04 5.46 84.66 0.46 0.43 16
3 Si 0.97 44.73 29.54 68.60 2.03 46.76 16
4 H -0.26 -11.45 7.11 99.48 0.71 -10.74 16
5 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16
6 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16
7 C -0.54 -31.17 9.11 25.60 0.23 -30.93 16
8 H 0.06 3.41 7.74 -2.91 -0.02 3.39 16
9 C 0.00 0.09 4.47 29.85 0.13 0.22 16
10 C 0.08 3.22 5.06 86.30 0.44 3.66 16
11 N -0.54 -19.82 4.18 -896.25 -3.75 -23.56 16
12 C 0.06 2.23 4.39 87.12 0.38 2.61 16
13 C -0.10 -2.71 5.37 28.74 0.15 -2.55 16
14 C -0.10 -2.41 4.86 28.93 0.14 -2.27 16
15 C 0.10 2.49 1.34 44.63 0.06 2.55 16
16 H 0.04 1.21 7.62 -2.39 -0.02 1.19 16
17 N -0.53 -11.81 5.11 -859.51 -4.39 -16.20 16
18 C 0.03 0.57 5.49 86.65 0.48 1.05 16
19 C -0.12 -1.80 7.06 31.80 0.22 -1.58 16
20 C -0.13 -1.84 6.93 31.48 0.22 -1.62 16
21 C 0.03 0.63 5.49 86.45 0.47 1.10 16
22 C -0.11 -3.09 4.84 30.11 0.15 -2.95 16
23 C 0.06 2.10 5.31 86.41 0.46 2.56 16
24 H 0.26 15.21 8.31 -92.71 -0.77 14.44 16
25 H -0.01 -0.37 6.16 -2.39 -0.01 -0.38 16
26 H -0.01 -0.70 7.24 -2.39 -0.02 -0.72 16
27 H 0.07 2.76 7.92 -2.39 -0.02 2.74 16
28 H 0.06 2.59 8.14 -2.38 -0.02 2.57 16
29 H 0.02 0.91 6.79 -2.38 -0.02 0.90 16
30 H 0.05 2.01 7.25 -2.39 -0.02 1.99 16
31 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16
32 H 0.07 1.78 8.08 -2.39 -0.02 1.76 16
33 H 0.05 1.42 7.59 -2.39 -0.02 1.40 16
34 H 0.07 1.59 6.76 -2.39 -0.02 1.57 16
35 H 0.08 1.60 6.99 -2.39 -0.02 1.59 16
36 H 0.04 0.84 8.02 -2.39 -0.02 0.82 16
37 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16
38 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16
39 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16
40 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16
41 H 0.04 0.78 7.66 -2.39 -0.02 0.76 16
42 H 0.08 1.39 7.88 -2.39 -0.02 1.37 16
43 H 0.08 2.16 5.74 -2.39 -0.01 2.14 16
44 H 0.05 1.60 6.66 -2.39 -0.02 1.59 16
45 H 0.02 0.79 5.73 -2.39 -0.01 0.77 16
46 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16
Total: -1.00 -63.75 335.76 -0.90 -64.66
By element:
Atomic # 1 Polarization: 12.48 SS G_CDS: 0.92 Total: 13.40 kcal
Atomic # 6 Polarization: -31.73 SS G_CDS: 4.00 Total: -27.73 kcal
Atomic # 7 Polarization: -89.24 SS G_CDS: -7.85 Total: -97.09 kcal
Atomic # 14 Polarization: 44.73 SS G_CDS: 2.03 Total: 46.76 kcal
Total: -63.75 -0.90 -64.66 kcal
The number of atoms in the molecule is 46
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000157119012.mol2 46
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 44.161 kcal
(2) G-P(sol) polarization free energy of solvation -63.752 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.591 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.905 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.656 kcal
(6) G-S(sol) free energy of system = (1) + (5) -20.495 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.54 seconds