Wall clock time and date at job start Mon Mar 30 2020 00:52:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86800 * 120.00280 * 2 1 4 4 H 1.48502 * 109.47288 * 180.02562 * 3 2 1 5 5 H 1.48491 * 109.47470 * 300.00357 * 3 2 1 6 6 H 1.48503 * 109.46729 * 60.00484 * 3 2 1 7 7 C 1.37880 * 119.99853 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99977 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99967 * 359.97438 * 7 2 1 10 10 C 1.52997 * 109.46989 * 180.02562 * 9 7 2 11 11 N 1.46897 * 109.47068 * 180.02562 * 10 9 7 12 12 C 1.44298 * 111.00137 * 293.95170 * 11 10 9 13 13 C 1.53979 * 108.31423 * 221.34653 * 12 11 10 14 14 C 1.45879 * 112.67027 * 278.59433 * 13 12 11 15 15 C 1.54517 * 111.67014 * 61.49677 * 14 13 12 16 16 H 1.08993 * 109.57577 * 42.71158 * 15 14 13 17 17 N 1.46906 * 109.57227 * 162.95756 * 15 14 13 18 18 C 1.48530 * 110.99918 * 177.59952 * 17 15 14 19 19 C 1.54940 * 103.22772 * 159.72252 * 18 17 15 20 20 C 1.54604 * 102.91923 * 322.58912 * 19 18 17 21 21 C 1.47899 * 110.99831 * 295.00098 * 17 15 14 22 22 C 1.50536 * 108.86312 * 282.76937 * 15 14 13 23 23 C 1.47946 * 110.99963 * 61.36207 * 11 10 9 24 24 H 0.97000 * 119.99510 * 359.97438 * 1 2 3 25 25 H 1.08992 * 109.46967 * 60.00375 * 9 7 2 26 26 H 1.08999 * 109.47161 * 299.99988 * 9 7 2 27 27 H 1.09000 * 109.47601 * 60.00278 * 10 9 7 28 28 H 1.09008 * 109.47383 * 300.00024 * 10 9 7 29 29 H 1.09005 * 109.69472 * 101.64151 * 12 11 10 30 30 H 1.09003 * 109.72736 * 341.07400 * 12 11 10 31 31 H 1.09001 * 108.84745 * 157.77164 * 13 12 11 32 32 H 1.09004 * 108.84272 * 39.41983 * 13 12 11 33 33 H 1.08997 * 109.04016 * 300.93081 * 14 13 12 34 34 H 1.09001 * 108.98079 * 182.02370 * 14 13 12 35 35 H 1.09002 * 110.67228 * 278.15582 * 18 17 15 36 36 H 1.09004 * 110.67104 * 41.28985 * 18 17 15 37 37 H 1.09002 * 110.72702 * 204.23263 * 19 18 17 38 38 H 1.08997 * 110.87867 * 81.01343 * 19 18 17 39 39 H 1.09001 * 110.30354 * 263.04015 * 20 19 18 40 40 H 1.09000 * 110.39036 * 140.91740 * 20 19 18 41 41 H 1.08997 * 109.91760 * 333.50746 * 21 17 15 42 42 H 1.08995 * 109.91931 * 94.80655 * 21 17 15 43 43 H 1.08998 * 108.79191 * 212.64184 * 22 15 14 44 44 H 1.08998 * 108.78757 * 330.86073 * 22 15 14 45 45 H 1.08997 * 108.70888 * 313.18214 * 23 11 10 46 46 H 1.08996 * 108.71251 * 71.32236 * 23 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8905 2.3965 -1.2124 6 1 1.8905 2.3963 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 6 2.2451 -3.6621 -0.0005 11 7 1.5106 -4.9342 -0.0012 12 6 0.7780 -5.1090 1.2297 13 6 0.9226 -6.5760 1.6747 14 6 -0.0009 -7.4674 0.9816 15 6 0.2474 -7.4728 -0.5434 16 1 1.3192 -7.5045 -0.7388 17 7 -0.3970 -8.6490 -1.1429 18 6 -0.2267 -8.6551 -2.6184 19 6 -0.4687 -10.1379 -2.9971 20 6 0.1855 -10.9051 -1.8251 21 6 0.2277 -9.8994 -0.6596 22 6 -0.3390 -6.2195 -1.1364 23 6 0.6727 -5.0620 -1.2137 24 1 -0.4849 0.8401 0.0004 25 1 0.6240 -2.5567 -0.8903 26 1 0.6246 -2.5571 0.8897 27 1 2.8718 -3.6045 0.8894 28 1 2.8719 -3.6044 -0.8906 29 1 -0.2744 -4.8765 1.0669 30 1 1.1852 -4.4505 1.9969 31 1 0.7350 -6.6389 2.7466 32 1 1.9433 -6.9045 1.4783 33 1 -1.0227 -7.1406 1.1744 34 1 0.1270 -8.4793 1.3663 35 1 -0.9665 -8.0110 -3.0938 36 1 0.7833 -8.3485 -2.8904 37 1 0.0229 -10.3806 -3.9392 38 1 -1.5353 -10.3555 -3.0529 39 1 1.1953 -11.2159 -2.0933 40 1 -0.4174 -11.7721 -1.5552 41 1 1.2611 -9.7102 -0.3696 42 1 -0.3333 -10.2909 0.1890 43 1 -0.6967 -6.4409 -2.1420 44 1 -1.1858 -5.9054 -0.5262 45 1 0.1271 -4.1301 -1.3615 46 1 1.3233 -5.2256 -2.0728 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000157119012.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:52:43 Heat of formation + Delta-G solvation = -20.495416 kcal Electronic energy + Delta-G solvation = -21321.200270 eV Core-core repulsion = 18437.159599 eV Total energy + Delta-G solvation = -2884.040671 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 266.205 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.93427 -39.14628 -36.26715 -34.76460 -33.57970 -31.78517 -30.22435 -29.76890 -27.33766 -25.80857 -25.35792 -23.14034 -22.27245 -21.63017 -20.88569 -20.04411 -18.66067 -17.47265 -17.02662 -16.65079 -16.56503 -15.87414 -15.54108 -15.21031 -14.76440 -14.66016 -14.32247 -14.14453 -14.00780 -13.60991 -13.48551 -13.35621 -13.07600 -12.87486 -12.62754 -12.36782 -12.20111 -12.14841 -11.97287 -11.87454 -11.73094 -11.66674 -11.55349 -11.40745 -11.33095 -11.26369 -11.07669 -10.57562 -9.31287 -8.97934 -8.22686 -6.35172 1.37596 1.37791 1.51471 2.37881 2.98915 3.09312 3.10624 3.70970 3.76857 3.81960 4.02579 4.14696 4.17549 4.22043 4.24387 4.41694 4.46990 4.54459 4.60723 4.65121 4.68565 4.76082 4.83867 4.86455 4.89411 4.94699 5.01816 5.02508 5.06877 5.10869 5.17483 5.20395 5.21961 5.26407 5.36335 5.38646 5.45638 5.51155 5.58384 5.73532 6.02130 6.06842 6.19641 6.34029 6.44575 6.82695 7.34285 8.88109 Molecular weight = 266.21amu Principal moments of inertia in cm(-1) A = 0.038917 B = 0.003733 C = 0.003584 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 719.316070 B = 7498.006129 C = 7810.294631 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.001 4.001 3 Si 0.966 3.034 4 H -0.260 1.260 5 H -0.279 1.279 6 H -0.278 1.278 7 C -0.541 4.541 8 H 0.062 0.938 9 C 0.002 3.998 10 C 0.075 3.925 11 N -0.540 5.540 12 C 0.064 3.936 13 C -0.102 4.102 14 C -0.098 4.098 15 C 0.097 3.903 16 H 0.043 0.957 17 N -0.526 5.526 18 C 0.028 3.972 19 C -0.119 4.119 20 C -0.128 4.128 21 C 0.034 3.966 22 C -0.105 4.105 23 C 0.059 3.941 24 H 0.263 0.737 25 H -0.006 1.006 26 H -0.012 1.012 27 H 0.065 0.935 28 H 0.061 0.939 29 H 0.024 0.976 30 H 0.053 0.947 31 H 0.074 0.926 32 H 0.066 0.934 33 H 0.054 0.946 34 H 0.074 0.926 35 H 0.078 0.922 36 H 0.040 0.960 37 H 0.082 0.918 38 H 0.074 0.926 39 H 0.072 0.928 40 H 0.081 0.919 41 H 0.040 0.960 42 H 0.080 0.920 43 H 0.080 0.920 44 H 0.050 0.950 45 H 0.018 0.982 46 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.253 -21.471 -2.465 21.613 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.198 4.198 3 Si 0.790 3.210 4 H -0.184 1.184 5 H -0.204 1.204 6 H -0.204 1.204 7 C -0.580 4.580 8 H 0.080 0.920 9 C -0.037 4.037 10 C -0.053 4.053 11 N -0.263 5.263 12 C -0.065 4.065 13 C -0.140 4.140 14 C -0.136 4.136 15 C -0.011 4.011 16 H 0.061 0.939 17 N -0.251 5.251 18 C -0.099 4.099 19 C -0.157 4.157 20 C -0.166 4.166 21 C -0.094 4.094 22 C -0.143 4.143 23 C -0.069 4.069 24 H 0.072 0.928 25 H 0.012 0.988 26 H 0.006 0.994 27 H 0.084 0.916 28 H 0.079 0.921 29 H 0.042 0.958 30 H 0.072 0.928 31 H 0.093 0.907 32 H 0.085 0.915 33 H 0.072 0.928 34 H 0.093 0.907 35 H 0.097 0.903 36 H 0.058 0.942 37 H 0.101 0.899 38 H 0.093 0.907 39 H 0.091 0.909 40 H 0.100 0.900 41 H 0.059 0.941 42 H 0.098 0.902 43 H 0.098 0.902 44 H 0.069 0.931 45 H 0.037 0.963 46 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -0.113 -21.723 -2.326 21.847 hybrid contribution 0.311 2.136 -0.147 2.163 sum 0.198 -19.587 -2.472 19.744 Atomic orbital electron populations 1.70113 1.07873 1.27666 1.51697 1.25996 0.95748 1.03446 0.94648 0.85383 0.79167 0.78667 0.77744 1.18409 1.20422 1.20402 1.21656 0.93592 0.92227 1.50486 0.92007 1.19539 0.95167 0.94308 0.94657 1.22101 0.95757 0.86321 1.01071 1.61237 1.29753 1.33195 1.02135 1.21756 0.95798 0.97492 0.91433 1.20397 1.00619 0.93185 0.99825 1.20502 0.99438 1.00071 0.93571 1.21378 0.95842 0.89257 0.94662 0.93936 1.64783 1.53446 1.01759 1.05075 1.23275 0.99859 0.98317 0.88457 1.22462 1.01674 0.93075 0.98448 1.22410 1.01551 0.98195 0.94424 1.22881 0.97546 0.90087 0.98838 1.21400 0.97224 0.93621 1.02091 1.22371 0.94776 0.96929 0.92785 0.92841 0.98815 0.99366 0.91616 0.92064 0.95756 0.92801 0.90748 0.91526 0.92758 0.90737 0.90324 0.94204 0.89927 0.90693 0.90942 0.90006 0.94123 0.90179 0.90185 0.93133 0.96327 0.91414 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.61 13.29 21.45 0.28 -57.33 16 2 C 0.00 -0.04 5.46 84.66 0.46 0.43 16 3 Si 0.97 44.73 29.54 68.60 2.03 46.76 16 4 H -0.26 -11.45 7.11 99.48 0.71 -10.74 16 5 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 6 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 7 C -0.54 -31.17 9.11 25.60 0.23 -30.93 16 8 H 0.06 3.41 7.74 -2.91 -0.02 3.39 16 9 C 0.00 0.09 4.47 29.85 0.13 0.22 16 10 C 0.08 3.22 5.06 86.30 0.44 3.66 16 11 N -0.54 -19.82 4.18 -896.25 -3.75 -23.56 16 12 C 0.06 2.23 4.39 87.12 0.38 2.61 16 13 C -0.10 -2.71 5.37 28.74 0.15 -2.55 16 14 C -0.10 -2.41 4.86 28.93 0.14 -2.27 16 15 C 0.10 2.49 1.34 44.63 0.06 2.55 16 16 H 0.04 1.21 7.62 -2.39 -0.02 1.19 16 17 N -0.53 -11.81 5.11 -859.51 -4.39 -16.20 16 18 C 0.03 0.57 5.49 86.65 0.48 1.05 16 19 C -0.12 -1.80 7.06 31.80 0.22 -1.58 16 20 C -0.13 -1.84 6.93 31.48 0.22 -1.62 16 21 C 0.03 0.63 5.49 86.45 0.47 1.10 16 22 C -0.11 -3.09 4.84 30.11 0.15 -2.95 16 23 C 0.06 2.10 5.31 86.41 0.46 2.56 16 24 H 0.26 15.21 8.31 -92.71 -0.77 14.44 16 25 H -0.01 -0.37 6.16 -2.39 -0.01 -0.38 16 26 H -0.01 -0.70 7.24 -2.39 -0.02 -0.72 16 27 H 0.07 2.76 7.92 -2.39 -0.02 2.74 16 28 H 0.06 2.59 8.14 -2.38 -0.02 2.57 16 29 H 0.02 0.91 6.79 -2.38 -0.02 0.90 16 30 H 0.05 2.01 7.25 -2.39 -0.02 1.99 16 31 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 32 H 0.07 1.78 8.08 -2.39 -0.02 1.76 16 33 H 0.05 1.42 7.59 -2.39 -0.02 1.40 16 34 H 0.07 1.59 6.76 -2.39 -0.02 1.57 16 35 H 0.08 1.60 6.99 -2.39 -0.02 1.59 16 36 H 0.04 0.84 8.02 -2.39 -0.02 0.82 16 37 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 38 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 39 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 40 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 41 H 0.04 0.78 7.66 -2.39 -0.02 0.76 16 42 H 0.08 1.39 7.88 -2.39 -0.02 1.37 16 43 H 0.08 2.16 5.74 -2.39 -0.01 2.14 16 44 H 0.05 1.60 6.66 -2.39 -0.02 1.59 16 45 H 0.02 0.79 5.73 -2.39 -0.01 0.77 16 46 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 Total: -1.00 -63.75 335.76 -0.90 -64.66 By element: Atomic # 1 Polarization: 12.48 SS G_CDS: 0.92 Total: 13.40 kcal Atomic # 6 Polarization: -31.73 SS G_CDS: 4.00 Total: -27.73 kcal Atomic # 7 Polarization: -89.24 SS G_CDS: -7.85 Total: -97.09 kcal Atomic # 14 Polarization: 44.73 SS G_CDS: 2.03 Total: 46.76 kcal Total: -63.75 -0.90 -64.66 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000157119012.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.161 kcal (2) G-P(sol) polarization free energy of solvation -63.752 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.591 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.905 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.656 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.495 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds