Wall clock time and date at job start Mon Mar 30 2020 00:52:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86801 * 120.00227 * 2 1 4 4 H 1.48493 * 109.47255 * 240.00152 * 3 2 1 5 5 H 1.48501 * 109.46713 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.47170 * 120.00082 * 3 2 1 7 7 C 1.37882 * 120.00030 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00087 * 180.02562 * 7 2 1 9 9 C 1.50702 * 119.99950 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47008 * 179.97438 * 9 7 2 11 11 N 1.46900 * 109.47031 * 179.97438 * 10 9 7 12 12 C 1.47792 * 111.00484 * 293.95623 * 11 10 9 13 13 C 1.45860 * 112.92589 * 153.85750 * 12 11 10 14 14 C 1.54511 * 111.58756 * 61.32035 * 13 12 11 15 15 C 1.50461 * 108.86072 * 282.82516 * 14 13 12 16 16 H 1.09004 * 108.76966 * 331.23559 * 15 14 13 17 17 N 1.46895 * 108.76929 * 213.06854 * 15 14 13 18 18 C 1.48533 * 111.00308 * 61.11586 * 17 15 14 19 19 C 1.54937 * 103.22758 * 159.71909 * 18 17 15 20 20 C 1.54588 * 102.92161 * 322.58134 * 19 18 17 21 21 C 1.47903 * 110.99852 * 178.50964 * 17 15 14 22 22 C 1.54290 * 113.03446 * 92.15089 * 15 14 13 23 23 C 1.44273 * 111.00240 * 171.97782 * 11 10 9 24 24 H 0.96996 * 119.99947 * 359.97438 * 1 2 3 25 25 H 1.08995 * 109.47032 * 59.99674 * 9 7 2 26 26 H 1.09006 * 109.46824 * 299.99720 * 9 7 2 27 27 H 1.09009 * 109.47516 * 60.00103 * 10 9 7 28 28 H 1.08997 * 109.47316 * 299.99629 * 10 9 7 29 29 H 1.09000 * 108.79073 * 32.96443 * 12 11 10 30 30 H 1.09003 * 108.70338 * 274.68222 * 12 11 10 31 31 H 1.09003 * 109.05342 * 300.77770 * 13 12 11 32 32 H 1.09000 * 109.00325 * 181.82922 * 13 12 11 33 33 H 1.09002 * 109.57085 * 42.64028 * 14 13 12 34 34 H 1.09003 * 109.57351 * 163.01401 * 14 13 12 35 35 H 1.08998 * 110.66422 * 278.15359 * 18 17 15 36 36 H 1.08999 * 110.66778 * 41.27967 * 18 17 15 37 37 H 1.09008 * 110.71991 * 204.22939 * 19 18 17 38 38 H 1.08996 * 110.72344 * 80.94284 * 19 18 17 39 39 H 1.09001 * 110.31486 * 263.03973 * 20 19 18 40 40 H 1.09001 * 110.30600 * 140.87287 * 20 19 18 41 41 H 1.09000 * 109.92001 * 333.50631 * 21 17 15 42 42 H 1.08997 * 109.91822 * 94.60366 * 21 17 15 43 43 H 1.09007 * 108.91647 * 197.57771 * 22 15 14 44 44 H 1.08991 * 108.84841 * 78.97573 * 22 15 14 45 45 H 1.09003 * 108.98008 * 339.96104 * 23 11 10 46 46 H 1.08996 * 108.97801 * 98.75328 * 23 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2124 5 1 1.2841 2.7464 0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2453 -3.6621 0.0005 11 7 1.5108 -4.9343 0.0012 12 6 0.7611 -5.1126 1.2623 13 6 -0.4066 -5.9736 1.1123 14 6 -0.0091 -7.3974 0.6626 15 6 0.3053 -7.3728 -0.8086 16 1 -0.2782 -6.5811 -1.2787 17 7 -0.0887 -8.6595 -1.3977 18 6 -1.5470 -8.8930 -1.2398 19 6 -1.8557 -9.9543 -2.3256 20 6 -0.9458 -9.5235 -3.4987 21 6 0.1668 -8.6759 -2.8544 22 6 1.8002 -7.1291 -1.1025 23 6 2.4072 -6.0490 -0.1868 24 1 -0.4850 0.8400 0.0004 25 1 0.6247 -2.5571 -0.8896 26 1 0.6240 -2.5567 0.8904 27 1 2.8720 -3.6044 0.8906 28 1 2.8719 -3.6044 -0.8894 29 1 0.4337 -4.1354 1.6173 30 1 1.4271 -5.5505 2.0059 31 1 -1.0758 -5.5395 0.3694 32 1 -0.9277 -6.0346 2.0678 33 1 0.8699 -7.7238 1.2185 34 1 -0.8360 -8.0831 0.8479 35 1 -1.7688 -9.2831 -0.2465 36 1 -2.1060 -7.9764 -1.4278 37 1 -2.9054 -9.9141 -2.6168 38 1 -1.5890 -10.9519 -1.9767 39 1 -1.5096 -8.9262 -4.2153 40 1 -0.5190 -10.3991 -3.9877 41 1 0.1350 -7.6601 -3.2484 42 1 1.1409 -9.1216 -3.0555 43 1 1.9096 -6.8147 -2.1405 44 1 2.3443 -8.0622 -0.9571 45 1 3.3343 -5.6873 -0.6316 46 1 2.6294 -6.4926 0.7837 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000157119164.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:52:46 Heat of formation + Delta-G solvation = -0.137817 kcal Electronic energy + Delta-G solvation = -21265.951387 eV Core-core repulsion = 18382.793487 eV Total energy + Delta-G solvation = -2883.157899 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 266.205 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.78822 -38.01576 -34.57586 -32.88490 -32.45496 -30.48363 -29.01549 -28.66535 -25.94997 -24.36003 -23.66416 -21.32600 -21.23304 -20.55412 -19.81527 -18.96872 -16.55906 -16.22276 -15.94526 -15.17773 -14.95655 -14.46864 -14.24496 -14.13124 -13.73776 -13.24124 -12.93169 -12.79668 -12.60951 -12.52919 -12.07766 -11.80581 -11.63823 -11.39442 -11.21461 -11.06306 -11.00595 -10.87928 -10.67460 -10.57458 -10.44075 -10.40188 -10.25349 -10.03381 -9.79031 -9.29789 -9.10542 -8.34043 -8.31874 -7.66174 -5.98843 -4.01195 3.33634 3.38003 3.40367 3.97458 4.38865 4.54918 4.58549 4.60557 4.85262 5.06308 5.15093 5.24891 5.33971 5.37273 5.41320 5.47763 5.55116 5.61927 5.69083 5.72578 5.74905 5.79498 5.87648 5.89056 5.91437 5.98077 6.02196 6.11535 6.19803 6.27939 6.36720 6.38242 6.44268 6.53861 6.56610 6.70680 6.97705 6.99442 7.19810 7.56757 7.64594 7.86461 7.92728 8.11730 8.44686 9.05958 9.62275 11.12442 Molecular weight = 266.21amu Principal moments of inertia in cm(-1) A = 0.030235 B = 0.003783 C = 0.003738 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 925.852876 B = 7400.448612 C = 7488.206425 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.059 3.941 3 Si 0.892 3.108 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.523 4.523 8 H 0.053 0.947 9 C 0.028 3.972 10 C 0.064 3.936 11 N -0.531 5.531 12 C 0.049 3.951 13 C -0.112 4.112 14 C -0.108 4.108 15 C 0.090 3.910 16 H 0.050 0.950 17 N -0.521 5.521 18 C 0.034 3.966 19 C -0.123 4.123 20 C -0.132 4.132 21 C 0.036 3.964 22 C -0.098 4.098 23 C 0.057 3.943 24 H 0.261 0.739 25 H 0.023 0.977 26 H 0.018 0.982 27 H 0.019 0.981 28 H 0.060 0.940 29 H 0.082 0.918 30 H 0.026 0.974 31 H 0.068 0.932 32 H 0.061 0.939 33 H 0.061 0.939 34 H 0.064 0.936 35 H 0.080 0.920 36 H 0.045 0.955 37 H 0.068 0.932 38 H 0.071 0.929 39 H 0.064 0.936 40 H 0.068 0.932 41 H 0.046 0.954 42 H 0.075 0.925 43 H 0.057 0.943 44 H 0.063 0.937 45 H 0.060 0.940 46 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.747 -19.349 -2.295 19.563 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.143 4.143 3 Si 0.720 3.280 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.562 4.562 8 H 0.071 0.929 9 C -0.009 4.009 10 C -0.063 4.063 11 N -0.255 5.255 12 C -0.078 4.078 13 C -0.150 4.150 14 C -0.146 4.146 15 C -0.018 4.018 16 H 0.068 0.932 17 N -0.246 5.246 18 C -0.094 4.094 19 C -0.161 4.161 20 C -0.170 4.170 21 C -0.092 4.092 22 C -0.137 4.137 23 C -0.073 4.073 24 H 0.070 0.930 25 H 0.042 0.958 26 H 0.036 0.964 27 H 0.037 0.963 28 H 0.079 0.921 29 H 0.100 0.900 30 H 0.044 0.956 31 H 0.086 0.914 32 H 0.080 0.920 33 H 0.080 0.920 34 H 0.083 0.917 35 H 0.098 0.902 36 H 0.064 0.936 37 H 0.086 0.914 38 H 0.090 0.910 39 H 0.083 0.917 40 H 0.087 0.913 41 H 0.065 0.935 42 H 0.093 0.907 43 H 0.075 0.925 44 H 0.082 0.918 45 H 0.078 0.922 46 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -1.918 -19.596 -2.431 19.839 hybrid contribution 0.629 1.650 0.206 1.778 sum -1.289 -17.945 -2.224 18.129 Atomic orbital electron populations 1.69960 1.06012 1.26652 1.50614 1.24987 0.94823 0.99135 0.95312 0.86665 0.79585 0.83194 0.78586 1.20241 1.21281 1.20307 1.21170 0.92943 0.91125 1.50941 0.92882 1.19108 0.93958 0.90121 0.97690 1.22405 0.96597 0.88495 0.98775 1.61667 1.27041 1.02268 1.34517 1.21049 0.95685 1.00830 0.90248 1.20585 0.98471 0.94662 1.01302 1.21436 1.01226 0.96845 0.95080 1.21541 0.96460 0.88672 0.95120 0.93191 1.64894 1.15188 1.32815 1.11666 1.23216 0.88941 0.97824 0.99398 1.22468 0.99093 0.99283 0.95294 1.22404 0.96887 0.99831 0.97865 1.22814 0.99018 0.99081 0.88328 1.21963 0.94490 0.97686 0.99577 1.21873 0.94995 0.92188 0.98269 0.92969 0.95839 0.96425 0.96314 0.92138 0.90011 0.95624 0.91360 0.92027 0.92019 0.91743 0.90179 0.93643 0.91357 0.91006 0.91688 0.91335 0.93541 0.90708 0.92464 0.91848 0.92154 0.94797 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.96 13.29 55.43 0.74 -26.23 16 2 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 3 Si 0.89 21.75 29.54 -169.99 -5.02 16.73 16 4 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 5 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 6 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 7 C -0.52 -14.90 9.11 -34.44 -0.31 -15.21 16 8 H 0.05 1.46 7.74 -52.49 -0.41 1.06 16 9 C 0.03 0.74 4.95 -27.88 -0.14 0.61 16 10 C 0.06 1.36 4.67 -3.83 -0.02 1.34 16 11 N -0.53 -9.69 4.23 -239.56 -1.01 -10.70 16 12 C 0.05 0.84 4.79 -6.71 -0.03 0.80 16 13 C -0.11 -1.63 5.53 -29.32 -0.16 -1.80 16 14 C -0.11 -1.41 5.10 -27.21 -0.14 -1.55 16 15 C 0.09 1.23 1.32 -68.31 -0.09 1.14 16 16 H 0.05 0.80 7.20 -51.93 -0.37 0.43 16 17 N -0.52 -6.34 5.09 -223.21 -1.14 -7.47 16 18 C 0.03 0.37 5.59 -1.90 -0.01 0.35 16 19 C -0.12 -1.11 7.06 -24.87 -0.18 -1.28 16 20 C -0.13 -1.22 6.93 -25.38 -0.18 -1.39 16 21 C 0.04 0.40 5.60 -2.75 -0.02 0.38 16 22 C -0.10 -1.35 4.90 -25.50 -0.13 -1.47 16 23 C 0.06 0.87 5.17 -4.67 -0.02 0.85 16 24 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 25 H 0.02 0.67 8.14 -51.93 -0.42 0.24 16 26 H 0.02 0.48 6.23 -51.93 -0.32 0.16 16 27 H 0.02 0.40 8.12 -51.92 -0.42 -0.03 16 28 H 0.06 1.28 7.83 -51.93 -0.41 0.87 16 29 H 0.08 1.59 5.77 -51.93 -0.30 1.29 16 30 H 0.03 0.41 7.23 -51.93 -0.38 0.04 16 31 H 0.07 1.10 7.59 -51.93 -0.39 0.70 16 32 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 33 H 0.06 0.82 7.15 -51.93 -0.37 0.45 16 34 H 0.06 0.77 5.87 -51.93 -0.30 0.47 16 35 H 0.08 0.81 6.98 -51.93 -0.36 0.45 16 36 H 0.05 0.53 7.94 -51.93 -0.41 0.11 16 37 H 0.07 0.54 8.14 -51.92 -0.42 0.11 16 38 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 39 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 40 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 41 H 0.05 0.57 7.41 -51.93 -0.38 0.18 16 42 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 43 H 0.06 0.80 7.52 -51.92 -0.39 0.41 16 44 H 0.06 0.81 8.13 -51.93 -0.42 0.39 16 45 H 0.06 0.91 7.39 -51.93 -0.38 0.53 16 46 H 0.03 0.50 6.50 -51.93 -0.34 0.16 16 LS Contribution 337.54 15.07 5.09 5.09 Total: -1.00 -29.50 337.54 -11.33 -40.83 By element: Atomic # 1 Polarization: 5.86 SS G_CDS: -8.46 Total: -2.60 kcal Atomic # 6 Polarization: -14.12 SS G_CDS: -1.52 Total: -15.64 kcal Atomic # 7 Polarization: -42.99 SS G_CDS: -1.41 Total: -44.40 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.73 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -29.50 -11.33 -40.83 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000157119164.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.688 kcal (2) G-P(sol) polarization free energy of solvation -29.498 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.190 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.327 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.825 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.138 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds