Wall clock time and date at job start Mon Mar 30 2020 00:52:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86801 * 120.00227 * 2 1 4 4 H 1.48493 * 109.47255 * 240.00152 * 3 2 1 5 5 H 1.48501 * 109.46713 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.47170 * 120.00082 * 3 2 1 7 7 C 1.37882 * 120.00030 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00087 * 180.02562 * 7 2 1 9 9 C 1.50702 * 119.99950 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47008 * 179.97438 * 9 7 2 11 11 N 1.46900 * 109.47031 * 179.97438 * 10 9 7 12 12 C 1.47792 * 111.00484 * 293.95623 * 11 10 9 13 13 C 1.45860 * 112.92589 * 153.85750 * 12 11 10 14 14 C 1.54511 * 111.58756 * 61.32035 * 13 12 11 15 15 C 1.50461 * 108.86072 * 282.82516 * 14 13 12 16 16 H 1.09004 * 108.76966 * 331.23559 * 15 14 13 17 17 N 1.46895 * 108.76929 * 213.06854 * 15 14 13 18 18 C 1.48533 * 111.00308 * 61.11586 * 17 15 14 19 19 C 1.54937 * 103.22758 * 159.71909 * 18 17 15 20 20 C 1.54588 * 102.92161 * 322.58134 * 19 18 17 21 21 C 1.47903 * 110.99852 * 178.50964 * 17 15 14 22 22 C 1.54290 * 113.03446 * 92.15089 * 15 14 13 23 23 C 1.44273 * 111.00240 * 171.97782 * 11 10 9 24 24 H 0.96996 * 119.99947 * 359.97438 * 1 2 3 25 25 H 1.08995 * 109.47032 * 59.99674 * 9 7 2 26 26 H 1.09006 * 109.46824 * 299.99720 * 9 7 2 27 27 H 1.09009 * 109.47516 * 60.00103 * 10 9 7 28 28 H 1.08997 * 109.47316 * 299.99629 * 10 9 7 29 29 H 1.09000 * 108.79073 * 32.96443 * 12 11 10 30 30 H 1.09003 * 108.70338 * 274.68222 * 12 11 10 31 31 H 1.09003 * 109.05342 * 300.77770 * 13 12 11 32 32 H 1.09000 * 109.00325 * 181.82922 * 13 12 11 33 33 H 1.09002 * 109.57085 * 42.64028 * 14 13 12 34 34 H 1.09003 * 109.57351 * 163.01401 * 14 13 12 35 35 H 1.08998 * 110.66422 * 278.15359 * 18 17 15 36 36 H 1.08999 * 110.66778 * 41.27967 * 18 17 15 37 37 H 1.09008 * 110.71991 * 204.22939 * 19 18 17 38 38 H 1.08996 * 110.72344 * 80.94284 * 19 18 17 39 39 H 1.09001 * 110.31486 * 263.03973 * 20 19 18 40 40 H 1.09001 * 110.30600 * 140.87287 * 20 19 18 41 41 H 1.09000 * 109.92001 * 333.50631 * 21 17 15 42 42 H 1.08997 * 109.91822 * 94.60366 * 21 17 15 43 43 H 1.09007 * 108.91647 * 197.57771 * 22 15 14 44 44 H 1.08991 * 108.84841 * 78.97573 * 22 15 14 45 45 H 1.09003 * 108.98008 * 339.96104 * 23 11 10 46 46 H 1.08996 * 108.97801 * 98.75328 * 23 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2124 5 1 1.2841 2.7464 0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2453 -3.6621 0.0005 11 7 1.5108 -4.9343 0.0012 12 6 0.7611 -5.1126 1.2623 13 6 -0.4066 -5.9736 1.1123 14 6 -0.0091 -7.3974 0.6626 15 6 0.3053 -7.3728 -0.8086 16 1 -0.2782 -6.5811 -1.2787 17 7 -0.0887 -8.6595 -1.3977 18 6 -1.5470 -8.8930 -1.2398 19 6 -1.8557 -9.9543 -2.3256 20 6 -0.9458 -9.5235 -3.4987 21 6 0.1668 -8.6759 -2.8544 22 6 1.8002 -7.1291 -1.1025 23 6 2.4072 -6.0490 -0.1868 24 1 -0.4850 0.8400 0.0004 25 1 0.6247 -2.5571 -0.8896 26 1 0.6240 -2.5567 0.8904 27 1 2.8720 -3.6044 0.8906 28 1 2.8719 -3.6044 -0.8894 29 1 0.4337 -4.1354 1.6173 30 1 1.4271 -5.5505 2.0059 31 1 -1.0758 -5.5395 0.3694 32 1 -0.9277 -6.0346 2.0678 33 1 0.8699 -7.7238 1.2185 34 1 -0.8360 -8.0831 0.8479 35 1 -1.7688 -9.2831 -0.2465 36 1 -2.1060 -7.9764 -1.4278 37 1 -2.9054 -9.9141 -2.6168 38 1 -1.5890 -10.9519 -1.9767 39 1 -1.5096 -8.9262 -4.2153 40 1 -0.5190 -10.3991 -3.9877 41 1 0.1350 -7.6601 -3.2484 42 1 1.1409 -9.1216 -3.0555 43 1 1.9096 -6.8147 -2.1405 44 1 2.3443 -8.0622 -0.9571 45 1 3.3343 -5.6873 -0.6316 46 1 2.6294 -6.4926 0.7837 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000157119164.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:52:45 Heat of formation + Delta-G solvation = -18.503818 kcal Electronic energy + Delta-G solvation = -21266.747796 eV Core-core repulsion = 18382.793487 eV Total energy + Delta-G solvation = -2883.954309 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 266.205 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.90277 -39.20297 -36.04042 -34.78268 -33.64322 -32.06875 -30.08041 -29.88562 -27.42301 -25.94572 -25.04948 -22.78806 -22.28929 -21.58138 -21.22441 -20.15114 -18.57385 -17.40656 -16.81745 -16.66852 -16.41992 -16.20401 -15.57015 -15.44613 -14.76613 -14.63814 -14.36669 -14.02779 -13.79458 -13.77641 -13.50660 -13.30940 -12.91880 -12.77118 -12.70178 -12.43167 -12.26035 -12.17176 -12.02021 -11.88936 -11.75434 -11.54391 -11.41464 -11.39063 -11.23665 -11.15918 -11.14220 -10.53193 -9.35810 -9.11937 -8.20632 -6.32178 1.39187 1.42510 1.50414 2.39553 3.01103 3.06597 3.12521 3.73622 3.76917 3.86648 4.01012 4.12782 4.15898 4.26380 4.32440 4.40266 4.45353 4.48919 4.57932 4.60227 4.68998 4.72943 4.77321 4.82201 4.88071 4.94408 5.00285 5.03021 5.04586 5.09904 5.14051 5.19815 5.22792 5.25949 5.35138 5.38947 5.45582 5.48368 5.68527 5.78671 6.03513 6.12107 6.17640 6.34831 6.43657 6.84872 7.36877 8.91251 Molecular weight = 266.21amu Principal moments of inertia in cm(-1) A = 0.030235 B = 0.003783 C = 0.003738 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 925.852876 B = 7400.448612 C = 7488.206425 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.002 3.998 3 Si 0.966 3.034 4 H -0.267 1.267 5 H -0.283 1.283 6 H -0.266 1.266 7 C -0.547 4.547 8 H 0.060 0.940 9 C 0.038 3.962 10 C 0.081 3.919 11 N -0.542 5.542 12 C 0.053 3.947 13 C -0.108 4.108 14 C -0.098 4.098 15 C 0.095 3.905 16 H 0.017 0.983 17 N -0.521 5.521 18 C 0.029 3.971 19 C -0.117 4.117 20 C -0.129 4.129 21 C 0.032 3.968 22 C -0.091 4.091 23 C 0.056 3.944 24 H 0.264 0.736 25 H -0.013 1.013 26 H -0.004 1.004 27 H 0.021 0.979 28 H 0.062 0.938 29 H 0.049 0.951 30 H 0.042 0.958 31 H 0.045 0.955 32 H 0.080 0.920 33 H 0.068 0.932 34 H 0.079 0.921 35 H 0.089 0.911 36 H 0.031 0.969 37 H 0.081 0.919 38 H 0.080 0.920 39 H 0.065 0.935 40 H 0.084 0.916 41 H 0.028 0.972 42 H 0.081 0.919 43 H 0.049 0.951 44 H 0.080 0.920 45 H 0.063 0.937 46 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.784 -20.805 -2.122 20.928 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.196 4.196 3 Si 0.790 3.210 4 H -0.192 1.192 5 H -0.208 1.208 6 H -0.191 1.191 7 C -0.585 4.585 8 H 0.078 0.922 9 C 0.001 3.999 10 C -0.047 4.047 11 N -0.267 5.267 12 C -0.074 4.074 13 C -0.146 4.146 14 C -0.136 4.136 15 C -0.013 4.013 16 H 0.035 0.965 17 N -0.246 5.246 18 C -0.099 4.099 19 C -0.155 4.155 20 C -0.168 4.168 21 C -0.096 4.096 22 C -0.130 4.130 23 C -0.074 4.074 24 H 0.072 0.928 25 H 0.006 0.994 26 H 0.014 0.986 27 H 0.040 0.960 28 H 0.080 0.920 29 H 0.067 0.933 30 H 0.060 0.940 31 H 0.064 0.936 32 H 0.099 0.901 33 H 0.087 0.913 34 H 0.098 0.902 35 H 0.107 0.893 36 H 0.050 0.950 37 H 0.099 0.901 38 H 0.099 0.901 39 H 0.084 0.916 40 H 0.102 0.898 41 H 0.046 0.954 42 H 0.099 0.901 43 H 0.068 0.932 44 H 0.099 0.901 45 H 0.082 0.918 46 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -0.948 -21.078 -2.259 21.220 hybrid contribution 0.287 2.072 0.144 2.097 sum -0.662 -19.006 -2.115 19.135 Atomic orbital electron populations 1.70105 1.07843 1.27817 1.51358 1.25964 0.95740 1.03316 0.94586 0.85489 0.78265 0.78006 0.79209 1.19161 1.20792 1.19101 1.21612 0.93528 0.92328 1.51043 0.92178 1.18925 0.94158 0.91979 0.94866 1.22043 0.95233 0.88506 0.98876 1.61616 1.27566 1.02006 1.35464 1.21049 0.96675 0.99682 0.90024 1.20534 0.97089 0.95259 1.01723 1.21356 1.02018 0.95678 0.94531 1.21416 0.95912 0.88578 0.95425 0.96462 1.64926 1.16150 1.31274 1.12207 1.23305 0.87924 0.97936 1.00702 1.22469 0.99831 0.98927 0.94305 1.22412 0.96311 1.00054 0.97978 1.22875 1.00251 0.98561 0.87915 1.21891 0.94685 0.97686 0.98712 1.21945 0.94622 0.91426 0.99363 0.92776 0.99419 0.98578 0.96044 0.92001 0.93294 0.94001 0.93590 0.90108 0.91306 0.90248 0.89275 0.95045 0.90067 0.90083 0.91591 0.89778 0.95390 0.90086 0.93178 0.90110 0.91847 0.93453 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.68 13.29 21.45 0.28 -57.39 16 2 C 0.00 0.12 5.46 84.66 0.46 0.58 16 3 Si 0.97 44.73 29.54 68.60 2.03 46.76 16 4 H -0.27 -11.85 7.11 99.48 0.71 -11.15 16 5 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 6 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 7 C -0.55 -31.76 9.11 25.60 0.23 -31.53 16 8 H 0.06 3.32 7.74 -2.91 -0.02 3.30 16 9 C 0.04 2.08 4.95 29.85 0.15 2.23 16 10 C 0.08 3.51 4.67 86.30 0.40 3.92 16 11 N -0.54 -20.07 4.23 -911.84 -3.85 -23.93 16 12 C 0.05 1.82 4.79 83.94 0.40 2.22 16 13 C -0.11 -3.15 5.53 28.92 0.16 -2.99 16 14 C -0.10 -2.43 5.10 30.29 0.15 -2.27 16 15 C 0.10 2.54 1.32 44.53 0.06 2.60 16 16 H 0.02 0.58 7.20 -2.38 -0.02 0.56 16 17 N -0.52 -11.99 5.09 -860.11 -4.38 -16.36 16 18 C 0.03 0.58 5.59 86.65 0.48 1.07 16 19 C -0.12 -1.85 7.06 31.80 0.22 -1.63 16 20 C -0.13 -2.16 6.93 31.47 0.22 -1.94 16 21 C 0.03 0.68 5.60 86.45 0.48 1.17 16 22 C -0.09 -2.40 4.90 31.39 0.15 -2.25 16 23 C 0.06 1.65 5.17 87.15 0.45 2.10 16 24 H 0.26 15.33 8.31 -92.71 -0.77 14.56 16 25 H -0.01 -0.77 8.14 -2.39 -0.02 -0.79 16 26 H 0.00 -0.23 6.23 -2.38 -0.01 -0.25 16 27 H 0.02 0.91 8.12 -2.38 -0.02 0.89 16 28 H 0.06 2.65 7.83 -2.39 -0.02 2.63 16 29 H 0.05 2.00 5.77 -2.39 -0.01 1.98 16 30 H 0.04 1.30 7.23 -2.39 -0.02 1.28 16 31 H 0.05 1.54 7.59 -2.39 -0.02 1.52 16 32 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 33 H 0.07 1.64 7.15 -2.39 -0.02 1.62 16 34 H 0.08 1.74 5.87 -2.39 -0.01 1.73 16 35 H 0.09 1.63 6.98 -2.39 -0.02 1.61 16 36 H 0.03 0.72 7.94 -2.39 -0.02 0.70 16 37 H 0.08 1.09 8.14 -2.38 -0.02 1.07 16 38 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 39 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 40 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 41 H 0.03 0.69 7.41 -2.39 -0.02 0.68 16 42 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 43 H 0.05 1.38 7.52 -2.38 -0.02 1.37 16 44 H 0.08 1.88 8.13 -2.39 -0.02 1.86 16 45 H 0.06 1.84 7.39 -2.39 -0.02 1.83 16 46 H 0.05 1.29 6.50 -2.39 -0.02 1.27 16 Total: -1.00 -64.60 337.54 -0.96 -65.56 By element: Atomic # 1 Polarization: 11.17 SS G_CDS: 0.92 Total: 12.09 kcal Atomic # 6 Polarization: -30.76 SS G_CDS: 4.04 Total: -26.73 kcal Atomic # 7 Polarization: -89.74 SS G_CDS: -7.94 Total: -97.68 kcal Atomic # 14 Polarization: 44.73 SS G_CDS: 2.03 Total: 46.76 kcal Total: -64.60 -0.96 -65.56 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000157119164.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.056 kcal (2) G-P(sol) polarization free energy of solvation -64.597 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.541 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.963 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.560 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.504 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds