Wall clock time and date at job start Mon Mar 30 2020 00:38:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47060 * 2 1 4 4 C 1.50699 * 109.47083 * 240.00115 * 2 1 3 5 5 N 1.30528 * 126.34484 * 60.02049 * 4 2 1 6 6 N 1.28595 * 109.67015 * 179.97438 * 5 4 2 7 7 C 1.30524 * 109.67661 * 0.02562 * 6 5 4 8 8 C 1.50696 * 126.34648 * 180.02562 * 7 6 5 9 9 N 1.46904 * 109.47218 * 89.97778 * 8 7 6 10 10 C 1.46902 * 110.99483 * 293.94968 * 9 8 7 11 11 C 1.46895 * 111.00109 * 170.00010 * 9 8 7 12 12 H 1.09001 * 109.47091 * 309.99730 * 11 9 8 13 13 C 1.53001 * 109.47134 * 69.99668 * 11 9 8 14 14 C 1.50702 * 109.47036 * 189.99619 * 11 9 8 15 15 H 1.07999 * 120.00185 * 0.02562 * 14 11 9 16 16 C 1.37882 * 119.99635 * 179.97438 * 14 11 9 17 17 N 1.31520 * 119.99621 * 180.02562 * 16 14 11 18 18 Si 1.86797 * 120.00213 * 0.02562 * 16 14 11 19 19 H 1.48499 * 109.47479 * 89.99955 * 18 16 14 20 20 H 1.48503 * 109.46847 * 210.00066 * 18 16 14 21 21 H 1.48503 * 109.46932 * 329.99504 * 18 16 14 22 22 N 1.35493 * 126.34792 * 239.70842 * 4 2 1 23 23 C 1.46496 * 126.97954 * 0.04197 * 22 4 2 24 24 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.47194 * 299.99650 * 1 2 3 26 26 H 1.08992 * 109.47399 * 59.99823 * 1 2 3 27 27 H 1.09002 * 109.47398 * 120.00169 * 2 1 3 28 28 H 1.08996 * 109.47853 * 180.02562 * 3 2 1 29 29 H 1.09002 * 109.47153 * 300.00319 * 3 2 1 30 30 H 1.08998 * 109.47533 * 59.99948 * 3 2 1 31 31 H 1.09001 * 109.47094 * 209.97306 * 8 7 6 32 32 H 1.08992 * 109.47231 * 329.97303 * 8 7 6 33 33 H 1.09000 * 109.47113 * 60.00780 * 10 9 8 34 34 H 1.09004 * 109.46969 * 179.97438 * 10 9 8 35 35 H 1.08998 * 109.47192 * 299.99879 * 10 9 8 36 36 H 1.09002 * 109.46941 * 180.02562 * 13 11 9 37 37 H 1.08995 * 109.47159 * 299.99541 * 13 11 9 38 38 H 1.09000 * 109.47447 * 60.00456 * 13 11 9 39 39 H 0.96995 * 119.99542 * 179.97438 * 17 16 14 40 40 H 1.08997 * 109.47475 * 89.99618 * 23 22 4 41 41 H 1.09000 * 109.46960 * 210.00010 * 23 22 4 42 42 H 1.09008 * 109.46934 * 329.99651 * 23 22 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2305 5 7 1.7949 -0.3739 -2.4691 6 7 2.3798 -1.2003 -3.2619 7 6 3.0165 -2.1019 -2.5652 8 6 3.8272 -3.2472 -3.1148 9 7 5.2213 -2.8194 -3.2925 10 6 5.3265 -1.7864 -4.3316 11 6 6.0884 -3.9648 -3.5991 12 1 5.9118 -4.7587 -2.8734 13 6 5.7745 -4.4800 -5.0052 14 6 7.5312 -3.5347 -3.5322 15 1 7.7792 -2.5128 -3.2860 16 6 8.5346 -4.4462 -3.7842 17 7 9.7937 -4.0709 -3.7253 18 14 8.1057 -6.2138 -4.2093 19 1 7.9555 -6.3467 -5.6807 20 1 9.1899 -7.1130 -3.7392 21 1 6.8306 -6.5870 -3.5459 22 7 2.8190 -1.8133 -1.2561 23 6 3.3456 -2.5471 -0.1027 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 1.8934 -0.5139 0.8900 28 1 3.1299 1.4426 -0.0005 29 1 1.6766 1.9563 -0.8900 30 1 1.6767 1.9564 0.8899 31 1 3.7902 -4.0854 -2.4190 32 1 3.4162 -3.5547 -4.0763 33 1 4.7292 -0.9208 -4.0451 34 1 6.3689 -1.4874 -4.4424 35 1 4.9597 -2.1841 -5.2778 36 1 6.4176 -5.3302 -5.2325 37 1 4.7310 -4.7911 -5.0536 38 1 5.9511 -3.6862 -5.7309 39 1 10.4996 -4.7122 -3.9022 40 1 2.6396 -3.3258 0.1857 41 1 4.3004 -3.0018 -0.3666 42 1 3.4886 -1.8595 0.7309 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000161793848.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:38:12 Heat of formation + Delta-G solvation = 84.657544 kcal Electronic energy + Delta-G solvation = -21026.108073 eV Core-core repulsion = 18043.086833 eV Total energy + Delta-G solvation = -2983.021240 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.180 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -42.95177 -37.59929 -35.84457 -34.77038 -32.83159 -30.89367 -29.08841 -27.57022 -27.35147 -26.87884 -25.31966 -23.90483 -23.37826 -20.69533 -19.87126 -19.29068 -16.91800 -16.68186 -16.33071 -15.47193 -15.20724 -14.61956 -14.39680 -14.05568 -13.79755 -13.53131 -13.14745 -13.02990 -12.97605 -12.53716 -12.32532 -12.24865 -11.82613 -11.61252 -11.46518 -11.38102 -11.24784 -11.18787 -11.15551 -10.87071 -10.39346 -10.08511 -10.04480 -9.95878 -9.60189 -9.15692 -8.81035 -8.63104 -7.50725 -6.11702 -4.10539 1.96749 2.62401 3.07395 3.21704 3.29721 3.33812 4.20385 4.33872 4.47980 4.61554 4.71555 4.88481 4.91651 5.04550 5.08742 5.19342 5.25004 5.44137 5.44683 5.50396 5.66077 5.68595 5.73738 5.86289 6.04640 6.06797 6.08852 6.19852 6.22086 6.28005 6.30435 6.39781 6.49869 6.68224 6.89564 7.02290 7.11259 7.52183 7.80247 7.92201 8.57875 8.96285 8.99268 9.49455 11.01318 Molecular weight = 266.18amu Principal moments of inertia in cm(-1) A = 0.034703 B = 0.004493 C = 0.004429 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 806.651557 B = 6231.015463 C = 6320.681383 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.003 4.003 3 C -0.142 4.142 4 C 0.166 3.834 5 N -0.294 5.294 6 N -0.297 5.297 7 C 0.202 3.798 8 C 0.130 3.870 9 N -0.520 5.520 10 C 0.033 3.967 11 C 0.183 3.817 12 H 0.039 0.961 13 C -0.188 4.188 14 C -0.502 4.502 15 H 0.082 0.918 16 C 0.071 3.929 17 N -0.898 5.898 18 Si 0.886 3.114 19 H -0.280 1.280 20 H -0.297 1.297 21 H -0.269 1.269 22 N -0.464 5.464 23 C 0.070 3.930 24 H 0.053 0.947 25 H 0.064 0.936 26 H 0.068 0.932 27 H 0.082 0.918 28 H 0.056 0.944 29 H 0.068 0.932 30 H 0.064 0.936 31 H 0.085 0.915 32 H 0.064 0.936 33 H 0.052 0.948 34 H 0.079 0.921 35 H 0.023 0.977 36 H 0.046 0.954 37 H 0.029 0.971 38 H 0.060 0.940 39 H 0.264 0.736 40 H 0.077 0.923 41 H 0.105 0.895 42 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.000 3.471 9.343 18.850 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.024 4.024 3 C -0.200 4.200 4 C -0.101 4.101 5 N -0.134 5.134 6 N -0.137 5.137 7 C -0.066 4.066 8 C 0.000 4.000 9 N -0.244 5.244 10 C -0.115 4.115 11 C 0.076 3.924 12 H 0.057 0.943 13 C -0.247 4.247 14 C -0.540 4.540 15 H 0.100 0.900 16 C -0.131 4.131 17 N -0.536 5.536 18 Si 0.717 3.283 19 H -0.207 1.207 20 H -0.224 1.224 21 H -0.194 1.194 22 N -0.154 5.154 23 C -0.073 4.073 24 H 0.072 0.928 25 H 0.083 0.917 26 H 0.087 0.913 27 H 0.100 0.900 28 H 0.075 0.925 29 H 0.087 0.913 30 H 0.083 0.917 31 H 0.103 0.897 32 H 0.082 0.918 33 H 0.070 0.930 34 H 0.098 0.902 35 H 0.042 0.958 36 H 0.064 0.936 37 H 0.048 0.952 38 H 0.079 0.921 39 H 0.074 0.926 40 H 0.096 0.904 41 H 0.123 0.877 42 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -16.158 4.356 8.590 18.811 hybrid contribution 0.266 -2.189 0.037 2.206 sum -15.892 2.167 8.627 18.212 Atomic orbital electron populations 1.21787 0.92955 1.02170 1.02864 1.19518 0.96597 0.95767 0.90489 1.21799 1.01376 0.93980 1.02810 1.24632 0.97903 0.89748 0.97839 1.74125 1.20329 1.21218 0.97696 1.74246 1.11405 1.02424 1.25639 1.24813 1.00994 1.00581 0.80230 1.20439 0.89505 0.90189 0.99898 1.62225 1.02815 1.13058 1.46308 1.22305 1.02801 0.94197 0.92172 1.19815 0.93503 0.88198 0.90914 0.94307 1.22845 0.98203 1.01216 1.02421 1.20878 0.86962 0.98975 1.47206 0.90007 1.24909 0.94887 0.98274 0.95044 1.69876 0.99030 1.35072 1.49644 0.86892 0.77501 0.85423 0.78488 1.20675 1.22419 1.19412 1.45904 1.38152 1.23061 1.08236 1.22144 1.01578 0.97014 0.86610 0.92789 0.91685 0.91250 0.89951 0.92455 0.91252 0.91685 0.89714 0.91763 0.92962 0.90202 0.95822 0.93575 0.95214 0.92104 0.92566 0.90426 0.87666 0.89381 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.21 9.18 37.16 0.34 -0.87 16 2 C 0.00 -0.03 3.27 -91.77 -0.30 -0.33 16 3 C -0.14 -1.34 9.18 37.16 0.34 -1.00 16 4 C 0.17 2.37 6.54 -154.98 -1.01 1.36 16 5 N -0.29 -5.16 12.21 32.80 0.40 -4.76 16 6 N -0.30 -5.62 11.50 32.80 0.38 -5.24 16 7 C 0.20 3.43 6.65 -154.98 -1.03 2.40 16 8 C 0.13 2.21 4.70 -4.98 -0.02 2.19 16 9 N -0.52 -10.47 4.69 -237.73 -1.12 -11.58 16 10 C 0.03 0.68 8.49 60.07 0.51 1.19 16 11 C 0.18 4.11 1.90 -68.87 -0.13 3.98 16 12 H 0.04 0.88 6.99 -51.93 -0.36 0.51 16 13 C -0.19 -3.97 7.92 37.16 0.29 -3.67 16 14 C -0.50 -13.54 8.49 -34.44 -0.29 -13.83 16 15 H 0.08 2.45 7.37 -52.49 -0.39 2.06 16 16 C 0.07 1.97 5.45 -17.82 -0.10 1.87 16 17 N -0.90 -26.78 13.96 55.43 0.77 -26.01 16 18 Si 0.89 21.17 24.37 -169.99 -4.14 17.03 16 19 H -0.28 -6.59 6.87 56.52 0.39 -6.20 16 20 H -0.30 -7.14 7.11 56.52 0.40 -6.74 16 21 H -0.27 -6.05 6.53 56.52 0.37 -5.68 16 22 N -0.46 -6.63 3.15 -118.00 -0.37 -7.00 16 23 C 0.07 0.70 10.58 59.84 0.63 1.34 16 24 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 25 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 26 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 27 H 0.08 0.65 6.89 -51.93 -0.36 0.29 16 28 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 30 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.08 1.27 7.66 -51.93 -0.40 0.87 16 32 H 0.06 1.09 7.06 -51.93 -0.37 0.72 16 33 H 0.05 1.05 6.74 -51.93 -0.35 0.70 16 34 H 0.08 1.76 6.76 -51.93 -0.35 1.41 16 35 H 0.02 0.46 6.46 -51.93 -0.34 0.12 16 36 H 0.05 1.02 3.27 -51.93 -0.17 0.85 16 37 H 0.03 0.54 6.91 -51.93 -0.36 0.18 16 38 H 0.06 1.29 6.42 -51.93 -0.33 0.95 16 39 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 40 H 0.08 0.61 8.14 -51.93 -0.42 0.18 16 41 H 0.10 1.19 7.83 -51.93 -0.41 0.79 16 42 H 0.09 0.69 7.18 -51.92 -0.37 0.32 16 LS Contribution 325.58 15.07 4.91 4.91 Total: -1.00 -32.17 325.58 -6.63 -38.80 By element: Atomic # 1 Polarization: 5.93 SS G_CDS: -6.69 Total: -0.76 kcal Atomic # 6 Polarization: -4.60 SS G_CDS: -0.77 Total: -5.37 kcal Atomic # 7 Polarization: -54.66 SS G_CDS: 0.06 Total: -54.60 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -4.14 Total: 17.03 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -32.17 -6.63 -38.80 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000161793848.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.455 kcal (2) G-P(sol) polarization free energy of solvation -32.166 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.289 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.631 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.798 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.658 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds