Wall clock time and date at job start Mon Mar 30 2020 00:38:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47060 * 2 1 4 4 C 1.50699 * 109.47083 * 240.00115 * 2 1 3 5 5 N 1.30528 * 126.34484 * 60.02049 * 4 2 1 6 6 N 1.28595 * 109.67015 * 179.97438 * 5 4 2 7 7 C 1.30524 * 109.67661 * 0.02562 * 6 5 4 8 8 C 1.50696 * 126.34648 * 180.02562 * 7 6 5 9 9 N 1.46904 * 109.47218 * 89.97778 * 8 7 6 10 10 C 1.46902 * 110.99483 * 293.94968 * 9 8 7 11 11 C 1.46895 * 111.00109 * 170.00010 * 9 8 7 12 12 H 1.09001 * 109.47091 * 309.99730 * 11 9 8 13 13 C 1.53001 * 109.47134 * 69.99668 * 11 9 8 14 14 C 1.50702 * 109.47036 * 189.99619 * 11 9 8 15 15 H 1.07999 * 120.00185 * 0.02562 * 14 11 9 16 16 C 1.37882 * 119.99635 * 179.97438 * 14 11 9 17 17 N 1.31520 * 119.99621 * 180.02562 * 16 14 11 18 18 Si 1.86797 * 120.00213 * 0.02562 * 16 14 11 19 19 H 1.48499 * 109.47479 * 89.99955 * 18 16 14 20 20 H 1.48503 * 109.46847 * 210.00066 * 18 16 14 21 21 H 1.48503 * 109.46932 * 329.99504 * 18 16 14 22 22 N 1.35493 * 126.34792 * 239.70842 * 4 2 1 23 23 C 1.46496 * 126.97954 * 0.04197 * 22 4 2 24 24 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.47194 * 299.99650 * 1 2 3 26 26 H 1.08992 * 109.47399 * 59.99823 * 1 2 3 27 27 H 1.09002 * 109.47398 * 120.00169 * 2 1 3 28 28 H 1.08996 * 109.47853 * 180.02562 * 3 2 1 29 29 H 1.09002 * 109.47153 * 300.00319 * 3 2 1 30 30 H 1.08998 * 109.47533 * 59.99948 * 3 2 1 31 31 H 1.09001 * 109.47094 * 209.97306 * 8 7 6 32 32 H 1.08992 * 109.47231 * 329.97303 * 8 7 6 33 33 H 1.09000 * 109.47113 * 60.00780 * 10 9 8 34 34 H 1.09004 * 109.46969 * 179.97438 * 10 9 8 35 35 H 1.08998 * 109.47192 * 299.99879 * 10 9 8 36 36 H 1.09002 * 109.46941 * 180.02562 * 13 11 9 37 37 H 1.08995 * 109.47159 * 299.99541 * 13 11 9 38 38 H 1.09000 * 109.47447 * 60.00456 * 13 11 9 39 39 H 0.96995 * 119.99542 * 179.97438 * 17 16 14 40 40 H 1.08997 * 109.47475 * 89.99618 * 23 22 4 41 41 H 1.09000 * 109.46960 * 210.00010 * 23 22 4 42 42 H 1.09008 * 109.46934 * 329.99651 * 23 22 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2305 5 7 1.7949 -0.3739 -2.4691 6 7 2.3798 -1.2003 -3.2619 7 6 3.0165 -2.1019 -2.5652 8 6 3.8272 -3.2472 -3.1148 9 7 5.2213 -2.8194 -3.2925 10 6 5.3265 -1.7864 -4.3316 11 6 6.0884 -3.9648 -3.5991 12 1 5.9118 -4.7587 -2.8734 13 6 5.7745 -4.4800 -5.0052 14 6 7.5312 -3.5347 -3.5322 15 1 7.7792 -2.5128 -3.2860 16 6 8.5346 -4.4462 -3.7842 17 7 9.7937 -4.0709 -3.7253 18 14 8.1057 -6.2138 -4.2093 19 1 7.9555 -6.3467 -5.6807 20 1 9.1899 -7.1130 -3.7392 21 1 6.8306 -6.5870 -3.5459 22 7 2.8190 -1.8133 -1.2561 23 6 3.3456 -2.5471 -0.1027 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 1.8934 -0.5139 0.8900 28 1 3.1299 1.4426 -0.0005 29 1 1.6766 1.9563 -0.8900 30 1 1.6767 1.9564 0.8899 31 1 3.7902 -4.0854 -2.4190 32 1 3.4162 -3.5547 -4.0763 33 1 4.7292 -0.9208 -4.0451 34 1 6.3689 -1.4874 -4.4424 35 1 4.9597 -2.1841 -5.2778 36 1 6.4176 -5.3302 -5.2325 37 1 4.7310 -4.7911 -5.0536 38 1 5.9511 -3.6862 -5.7309 39 1 10.4996 -4.7122 -3.9022 40 1 2.6396 -3.3258 0.1857 41 1 4.3004 -3.0018 -0.3666 42 1 3.4886 -1.8595 0.7309 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000161793848.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:38:12 Heat of formation + Delta-G solvation = 62.500270 kcal Electronic energy + Delta-G solvation = -21027.068884 eV Core-core repulsion = 18043.086833 eV Total energy + Delta-G solvation = -2983.982051 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.180 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -44.12768 -39.23329 -36.73153 -35.86114 -34.76033 -32.49436 -30.60310 -28.61221 -28.22426 -28.05265 -27.22662 -25.52826 -24.38419 -22.08481 -21.03708 -20.71736 -18.69871 -17.91806 -17.61948 -17.04971 -16.30391 -16.08246 -15.72040 -15.57828 -15.02834 -14.68618 -14.39212 -14.32140 -14.04851 -13.93649 -13.70265 -13.27462 -13.07514 -13.01690 -12.97085 -12.72547 -12.51580 -12.35998 -12.18972 -12.17269 -11.99526 -11.88588 -11.44335 -11.22721 -11.13167 -11.01661 -10.74966 -10.05310 -9.11379 -8.25641 -6.29288 0.81525 1.34576 1.38006 1.48920 1.59855 1.83260 2.34204 3.07796 3.12591 3.33149 3.51972 3.78537 3.83044 4.07842 4.14654 4.31699 4.33960 4.37509 4.39390 4.52400 4.56743 4.62449 4.66094 4.71835 4.75976 4.81380 4.86249 4.94298 4.98509 5.03497 5.08670 5.14598 5.22313 5.33976 5.39855 5.43813 5.60383 5.93050 6.01248 6.21500 6.61236 6.76812 7.35070 7.77590 8.91338 Molecular weight = 266.18amu Principal moments of inertia in cm(-1) A = 0.034703 B = 0.004493 C = 0.004429 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 806.651557 B = 6231.015463 C = 6320.681383 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.004 4.004 3 C -0.139 4.139 4 C 0.179 3.821 5 N -0.334 5.334 6 N -0.331 5.331 7 C 0.187 3.813 8 C 0.136 3.864 9 N -0.529 5.529 10 C 0.048 3.952 11 C 0.188 3.812 12 H 0.051 0.949 13 C -0.185 4.185 14 C -0.502 4.502 15 H 0.034 0.966 16 C 0.013 3.987 17 N -0.951 5.951 18 Si 0.950 3.050 19 H -0.273 1.273 20 H -0.301 1.301 21 H -0.238 1.238 22 N -0.463 5.463 23 C 0.061 3.939 24 H 0.053 0.947 25 H 0.094 0.906 26 H 0.049 0.951 27 H 0.113 0.887 28 H 0.044 0.956 29 H 0.049 0.951 30 H 0.096 0.904 31 H 0.110 0.890 32 H 0.068 0.932 33 H 0.049 0.951 34 H 0.049 0.951 35 H 0.031 0.969 36 H 0.040 0.960 37 H 0.063 0.937 38 H 0.051 0.949 39 H 0.265 0.735 40 H 0.107 0.893 41 H 0.091 0.909 42 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.353 1.869 11.085 21.522 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.025 4.025 3 C -0.197 4.197 4 C -0.090 4.090 5 N -0.174 5.174 6 N -0.172 5.172 7 C -0.082 4.082 8 C 0.006 3.994 9 N -0.253 5.253 10 C -0.100 4.100 11 C 0.080 3.920 12 H 0.069 0.931 13 C -0.244 4.244 14 C -0.540 4.540 15 H 0.052 0.948 16 C -0.184 4.184 17 N -0.591 5.591 18 Si 0.777 3.223 19 H -0.199 1.199 20 H -0.229 1.229 21 H -0.162 1.162 22 N -0.153 5.153 23 C -0.080 4.080 24 H 0.072 0.928 25 H 0.113 0.887 26 H 0.068 0.932 27 H 0.131 0.869 28 H 0.063 0.937 29 H 0.068 0.932 30 H 0.115 0.885 31 H 0.128 0.872 32 H 0.086 0.914 33 H 0.068 0.932 34 H 0.068 0.932 35 H 0.050 0.950 36 H 0.059 0.941 37 H 0.082 0.918 38 H 0.070 0.930 39 H 0.074 0.926 40 H 0.125 0.875 41 H 0.110 0.890 42 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -18.543 2.759 10.348 21.414 hybrid contribution 0.980 -1.535 -0.411 1.867 sum -17.563 1.224 9.937 20.217 Atomic orbital electron populations 1.21760 0.91794 1.02330 1.03374 1.19842 0.97468 0.95668 0.89505 1.21788 1.00532 0.93927 1.03430 1.25464 0.96205 0.89024 0.98261 1.74042 1.21970 1.22114 0.99236 1.74136 1.12500 1.03361 1.27202 1.24723 1.01401 1.00589 0.81486 1.20447 0.87082 0.90971 1.00862 1.62055 1.04913 1.12336 1.46042 1.22078 1.00713 0.94455 0.92791 1.19628 0.91086 0.88987 0.92258 0.93120 1.22745 1.00234 1.00595 1.00786 1.21092 0.89964 0.96887 1.46073 0.94777 1.25769 0.94470 1.03150 0.95045 1.70044 1.00455 1.36856 1.51766 0.85846 0.78331 0.79388 0.78719 1.19934 1.22858 1.16154 1.46159 1.37673 1.23091 1.08340 1.22480 1.01594 0.98145 0.85779 0.92799 0.88715 0.93203 0.86885 0.93712 0.93199 0.88521 0.87178 0.91388 0.93217 0.93176 0.95047 0.94142 0.91765 0.93015 0.92599 0.87455 0.88987 0.86842 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.96 9.18 71.98 0.66 -1.30 16 2 C 0.00 -0.07 3.27 -11.54 -0.04 -0.11 16 3 C -0.14 -2.34 9.18 71.98 0.66 -1.68 16 4 C 0.18 4.84 6.54 137.98 0.90 5.74 16 5 N -0.33 -11.72 12.21 -50.15 -0.61 -12.33 16 6 N -0.33 -12.53 11.50 -50.15 -0.58 -13.11 16 7 C 0.19 6.16 6.65 137.98 0.92 7.08 16 8 C 0.14 4.35 4.70 85.55 0.40 4.75 16 9 N -0.53 -20.93 4.69 -906.05 -4.25 -25.18 16 10 C 0.05 1.98 8.49 127.69 1.08 3.07 16 11 C 0.19 8.19 1.90 44.17 0.08 8.27 16 12 H 0.05 2.12 6.99 -2.39 -0.02 2.11 16 13 C -0.19 -7.34 7.92 71.98 0.57 -6.77 16 14 C -0.50 -27.59 8.49 25.60 0.22 -27.37 16 15 H 0.03 2.15 7.37 -2.91 -0.02 2.13 16 16 C 0.01 0.71 5.45 84.66 0.46 1.17 16 17 N -0.95 -58.43 13.96 21.45 0.30 -58.13 16 18 Si 0.95 42.76 24.37 68.60 1.67 44.44 16 19 H -0.27 -11.93 6.87 99.48 0.68 -11.25 16 20 H -0.30 -13.65 7.11 99.48 0.71 -12.95 16 21 H -0.24 -9.47 6.53 99.48 0.65 -8.82 16 22 N -0.46 -12.32 3.15 -527.25 -1.66 -13.98 16 23 C 0.06 1.04 10.58 127.77 1.35 2.39 16 24 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 25 H 0.09 0.83 8.14 -2.39 -0.02 0.81 16 26 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 27 H 0.11 1.26 6.89 -2.39 -0.02 1.25 16 28 H 0.04 0.86 8.14 -2.39 -0.02 0.84 16 29 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 30 H 0.10 1.02 8.14 -2.39 -0.02 1.00 16 31 H 0.11 2.92 7.66 -2.39 -0.02 2.90 16 32 H 0.07 2.13 7.06 -2.39 -0.02 2.11 16 33 H 0.05 2.06 6.74 -2.39 -0.02 2.04 16 34 H 0.05 2.32 6.76 -2.38 -0.02 2.31 16 35 H 0.03 1.22 6.46 -2.39 -0.02 1.21 16 36 H 0.04 1.65 3.27 -2.39 -0.01 1.64 16 37 H 0.06 2.11 6.91 -2.39 -0.02 2.09 16 38 H 0.05 2.12 6.42 -2.39 -0.02 2.11 16 39 H 0.27 15.30 8.31 -92.71 -0.77 14.53 16 40 H 0.11 1.21 8.14 -2.39 -0.02 1.19 16 41 H 0.09 1.86 7.83 -2.39 -0.02 1.84 16 42 H 0.11 1.34 7.18 -2.38 -0.02 1.32 16 Total: -1.00 -73.02 325.58 3.06 -69.96 By element: Atomic # 1 Polarization: 12.18 SS G_CDS: 0.92 Total: 13.10 kcal Atomic # 6 Polarization: -12.04 SS G_CDS: 7.27 Total: -4.77 kcal Atomic # 7 Polarization: -115.93 SS G_CDS: -6.80 Total: -122.73 kcal Atomic # 14 Polarization: 42.76 SS G_CDS: 1.67 Total: 44.44 kcal Total: -73.02 3.06 -69.96 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000161793848.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.459 kcal (2) G-P(sol) polarization free energy of solvation -73.022 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.436 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.064 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.958 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.500 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds