Wall clock time and date at job start Mon Mar 30 2020 00:38:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.47129 * 2 1 4 4 C 1.50697 * 109.46951 * 239.99690 * 2 1 3 5 5 N 1.30521 * 126.34668 * 60.02820 * 4 2 1 6 6 N 1.28591 * 109.67722 * 179.97438 * 5 4 2 7 7 C 1.30529 * 109.67272 * 0.02562 * 6 5 4 8 8 C 1.50692 * 126.34932 * 179.97438 * 7 6 5 9 9 N 1.46904 * 109.47194 * 89.97380 * 8 7 6 10 10 C 1.46898 * 110.99883 * 66.04666 * 9 8 7 11 11 C 1.46898 * 111.00341 * 190.00151 * 9 8 7 12 12 H 1.09004 * 109.47025 * 54.99493 * 11 9 8 13 13 C 1.53002 * 109.47029 * 294.99916 * 11 9 8 14 14 C 1.50700 * 109.47460 * 174.99879 * 11 9 8 15 15 H 1.07995 * 119.99915 * 114.92717 * 14 11 9 16 16 C 1.37874 * 120.00045 * 294.93269 * 14 11 9 17 17 N 1.31513 * 120.00135 * 179.97438 * 16 14 11 18 18 Si 1.86807 * 119.99962 * 359.95013 * 16 14 11 19 19 H 1.48501 * 109.47090 * 84.87016 * 18 16 14 20 20 H 1.48503 * 109.46867 * 204.86818 * 18 16 14 21 21 H 1.48494 * 109.46976 * 324.86918 * 18 16 14 22 22 N 1.35495 * 107.30307 * 359.76964 * 7 6 5 23 23 C 1.46500 * 126.98133 * 180.22404 * 22 7 6 24 24 H 1.09000 * 109.47115 * 299.99887 * 1 2 3 25 25 H 1.09001 * 109.47315 * 180.02562 * 1 2 3 26 26 H 1.08996 * 109.47278 * 60.00042 * 1 2 3 27 27 H 1.09001 * 109.46918 * 120.00243 * 2 1 3 28 28 H 1.09000 * 109.47030 * 60.00061 * 3 2 1 29 29 H 1.09001 * 109.46953 * 180.02562 * 3 2 1 30 30 H 1.08996 * 109.47007 * 300.00124 * 3 2 1 31 31 H 1.08994 * 109.47388 * 209.97217 * 8 7 6 32 32 H 1.08997 * 109.47173 * 329.97478 * 8 7 6 33 33 H 1.08993 * 109.47353 * 59.99929 * 10 9 8 34 34 H 1.09000 * 109.46829 * 180.02562 * 10 9 8 35 35 H 1.09001 * 109.47262 * 299.99931 * 10 9 8 36 36 H 1.08994 * 109.47086 * 175.21867 * 13 11 9 37 37 H 1.08993 * 109.47464 * 295.22542 * 13 11 9 38 38 H 1.09007 * 109.46975 * 55.22363 * 13 11 9 39 39 H 0.96996 * 120.00184 * 179.97438 * 17 16 14 40 40 H 1.08998 * 109.47408 * 270.15957 * 23 22 7 41 41 H 1.09001 * 109.46767 * 30.16302 * 23 22 7 42 42 H 1.09007 * 109.47087 * 150.15469 * 23 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7105 -1.2304 5 7 1.7950 -0.3740 -2.4690 6 7 2.3797 -1.2005 -3.2618 7 6 3.0163 -2.1022 -2.5650 8 6 3.8260 -3.2481 -3.1146 9 7 5.2203 -2.8213 -3.2933 10 6 5.8532 -2.5352 -1.9989 11 6 5.9863 -3.8255 -4.0434 12 1 5.4857 -4.0322 -4.9893 13 6 6.0788 -5.1137 -3.2231 14 6 7.3731 -3.3010 -4.3131 15 1 8.2297 -3.7862 -3.8691 16 6 7.5484 -2.2017 -5.1265 17 7 8.7586 -1.7437 -5.3615 18 14 6.0668 -1.3632 -5.8955 19 1 5.4964 -0.3861 -4.9337 20 1 6.4854 -0.6544 -7.1315 21 1 5.0409 -2.3824 -6.2327 22 7 2.8179 -1.8141 -1.2560 23 6 3.3438 -2.5483 -0.1025 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3633 0.5138 -0.8899 27 1 1.8933 -0.5139 0.8900 28 1 1.6767 1.9563 0.8900 29 1 3.1300 1.4425 -0.0005 30 1 1.6767 1.9563 -0.8899 31 1 3.7890 -4.0860 -2.4184 32 1 3.4143 -3.5559 -4.0757 33 1 5.8391 -3.4331 -1.3812 34 1 6.8844 -2.2210 -2.1603 35 1 5.3058 -1.7388 -1.4948 36 1 6.5729 -5.8854 -3.8132 37 1 6.6531 -4.9264 -2.3159 38 1 5.0759 -5.4470 -2.9559 39 1 8.8819 -0.9706 -5.9340 40 1 2.6373 -3.3267 0.1856 41 1 4.2985 -3.0035 -0.3662 42 1 3.4871 -1.8609 0.7312 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000161793983.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:38:14 Heat of formation + Delta-G solvation = 80.958629 kcal Electronic energy + Delta-G solvation = -21493.097923 eV Core-core repulsion = 18509.916286 eV Total energy + Delta-G solvation = -2983.181637 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.180 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -42.93089 -37.65167 -35.84631 -34.75890 -32.52465 -30.86545 -29.16725 -27.82346 -27.34207 -26.61132 -25.58555 -23.82490 -23.38549 -20.53881 -19.80724 -19.14759 -17.02725 -16.73611 -16.48273 -15.40037 -14.94902 -14.71865 -14.32919 -13.87123 -13.81988 -13.58811 -13.15703 -13.01379 -12.93154 -12.59462 -12.31476 -12.15878 -11.72968 -11.54376 -11.41271 -11.31433 -11.23308 -11.12735 -11.06574 -10.62871 -10.43380 -10.01130 -9.97529 -9.95586 -9.60359 -9.21615 -8.72600 -8.52320 -7.40645 -6.04055 -4.12956 1.99359 2.60167 3.16413 3.61380 3.66509 3.83750 4.21821 4.48310 4.60017 4.63372 4.66552 4.85924 4.89195 4.97076 5.05827 5.22595 5.26289 5.45344 5.48679 5.52095 5.67166 5.69086 5.76824 5.91762 5.94115 5.98511 6.06704 6.09807 6.16344 6.19552 6.21990 6.38769 6.44802 6.65990 6.85000 7.04811 7.10255 7.57458 7.88164 8.06948 8.52042 8.94377 9.07410 9.60519 11.04752 Molecular weight = 266.18amu Principal moments of inertia in cm(-1) A = 0.024734 B = 0.006106 C = 0.005580 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1131.768075 B = 4584.621059 C = 5016.908313 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.002 4.002 3 C -0.142 4.142 4 C 0.164 3.836 5 N -0.292 5.292 6 N -0.286 5.286 7 C 0.201 3.799 8 C 0.129 3.871 9 N -0.528 5.528 10 C 0.034 3.966 11 C 0.171 3.829 12 H 0.050 0.950 13 C -0.164 4.164 14 C -0.515 4.515 15 H 0.072 0.928 16 C 0.086 3.914 17 N -0.897 5.897 18 Si 0.916 3.084 19 H -0.270 1.270 20 H -0.312 1.312 21 H -0.271 1.271 22 N -0.473 5.473 23 C 0.062 3.938 24 H 0.064 0.936 25 H 0.053 0.947 26 H 0.069 0.931 27 H 0.081 0.919 28 H 0.064 0.936 29 H 0.056 0.944 30 H 0.069 0.931 31 H 0.046 0.954 32 H 0.100 0.900 33 H 0.016 0.984 34 H 0.090 0.910 35 H 0.037 0.963 36 H 0.054 0.946 37 H 0.048 0.952 38 H 0.028 0.972 39 H 0.264 0.736 40 H 0.078 0.922 41 H 0.101 0.899 42 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.650 -0.863 14.799 20.151 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.023 4.023 3 C -0.200 4.200 4 C -0.103 4.103 5 N -0.132 5.132 6 N -0.125 5.125 7 C -0.067 4.067 8 C -0.001 4.001 9 N -0.254 5.254 10 C -0.114 4.114 11 C 0.067 3.933 12 H 0.067 0.933 13 C -0.223 4.223 14 C -0.553 4.553 15 H 0.090 0.910 16 C -0.119 4.119 17 N -0.533 5.533 18 Si 0.746 3.254 19 H -0.195 1.195 20 H -0.240 1.240 21 H -0.197 1.197 22 N -0.164 5.164 23 C -0.082 4.082 24 H 0.083 0.917 25 H 0.072 0.928 26 H 0.088 0.912 27 H 0.099 0.901 28 H 0.083 0.917 29 H 0.075 0.925 30 H 0.088 0.912 31 H 0.064 0.936 32 H 0.118 0.882 33 H 0.034 0.966 34 H 0.108 0.892 35 H 0.055 0.945 36 H 0.073 0.927 37 H 0.068 0.932 38 H 0.047 0.953 39 H 0.074 0.926 40 H 0.096 0.904 41 H 0.119 0.881 42 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -14.065 0.432 13.233 19.316 hybrid contribution -0.054 -0.929 1.244 1.554 sum -14.119 -0.498 14.477 20.228 Atomic orbital electron populations 1.21784 0.92923 1.02155 1.02882 1.19505 0.96638 0.95729 0.90385 1.21803 1.01324 0.94016 1.02850 1.24635 0.97982 0.89755 0.97901 1.74157 1.20216 1.21176 0.97631 1.74275 1.10910 1.01991 1.25343 1.24947 1.01191 1.00782 0.79760 1.20507 0.90477 0.88630 1.00475 1.62755 0.98501 1.45900 1.18236 1.22310 1.02155 0.97253 0.89709 1.19944 0.94653 0.86375 0.92369 0.93250 1.22301 0.98737 1.00188 1.01112 1.20800 0.89890 1.14302 1.30355 0.90966 1.25023 0.95959 0.96011 0.94881 1.69946 1.21749 1.24419 1.37235 0.86208 0.81993 0.80134 0.77048 1.19503 1.24031 1.19651 1.45992 1.38959 1.23398 1.08062 1.22296 1.01585 0.97284 0.86997 0.91709 0.92799 0.91197 0.90097 0.91685 0.92533 0.91180 0.93619 0.88168 0.96618 0.89157 0.94451 0.92706 0.93245 0.95261 0.92631 0.90362 0.88105 0.89314 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.28 9.18 37.16 0.34 -0.94 16 2 C 0.00 -0.02 3.27 -91.77 -0.30 -0.32 16 3 C -0.14 -1.45 9.18 37.16 0.34 -1.10 16 4 C 0.16 2.50 6.54 -154.99 -1.01 1.49 16 5 N -0.29 -5.63 12.21 32.80 0.40 -5.23 16 6 N -0.29 -6.11 12.21 32.80 0.40 -5.71 16 7 C 0.20 3.70 6.66 -154.98 -1.03 2.67 16 8 C 0.13 2.32 4.65 -4.98 -0.02 2.29 16 9 N -0.53 -11.11 2.78 -237.74 -0.66 -11.77 16 10 C 0.03 0.64 7.24 60.06 0.43 1.07 16 11 C 0.17 3.82 1.70 -68.86 -0.12 3.70 16 12 H 0.05 1.16 6.80 -51.93 -0.35 0.81 16 13 C -0.16 -3.02 8.40 37.16 0.31 -2.71 16 14 C -0.52 -13.91 7.76 -34.44 -0.27 -14.18 16 15 H 0.07 2.10 7.99 -52.49 -0.42 1.68 16 16 C 0.09 2.48 5.47 -17.82 -0.10 2.39 16 17 N -0.90 -27.38 13.96 55.43 0.77 -26.61 16 18 Si 0.92 24.47 26.26 -169.99 -4.46 20.00 16 19 H -0.27 -7.57 7.11 56.52 0.40 -7.17 16 20 H -0.31 -8.39 7.11 56.52 0.40 -7.99 16 21 H -0.27 -7.04 6.52 56.52 0.37 -6.67 16 22 N -0.47 -7.01 2.77 -118.00 -0.33 -7.34 16 23 C 0.06 0.61 9.83 59.85 0.59 1.20 16 24 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 25 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 26 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 27 H 0.08 0.66 6.89 -51.93 -0.36 0.30 16 28 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 30 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 31 H 0.05 0.69 6.56 -51.93 -0.34 0.35 16 32 H 0.10 1.83 8.00 -51.93 -0.42 1.41 16 33 H 0.02 0.25 5.63 -51.93 -0.29 -0.04 16 34 H 0.09 1.99 6.99 -51.93 -0.36 1.62 16 35 H 0.04 0.67 5.82 -51.93 -0.30 0.36 16 36 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 37 H 0.05 0.89 6.75 -51.93 -0.35 0.54 16 38 H 0.03 0.45 6.53 -51.92 -0.34 0.11 16 39 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 40 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 41 H 0.10 1.06 4.68 -51.93 -0.24 0.82 16 42 H 0.09 0.67 7.18 -51.93 -0.37 0.30 16 LS Contribution 324.06 15.07 4.88 4.88 Total: -1.00 -34.05 324.06 -6.53 -40.58 By element: Atomic # 1 Polarization: 2.33 SS G_CDS: -6.70 Total: -4.37 kcal Atomic # 6 Polarization: -3.61 SS G_CDS: -0.83 Total: -4.44 kcal Atomic # 7 Polarization: -57.25 SS G_CDS: 0.59 Total: -56.66 kcal Atomic # 14 Polarization: 24.47 SS G_CDS: -4.46 Total: 20.00 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -34.05 -6.53 -40.58 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000161793983.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.541 kcal (2) G-P(sol) polarization free energy of solvation -34.055 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.487 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.528 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.583 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.959 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds