Wall clock time and date at job start Mon Mar 30 2020 00:38:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.47129 * 2 1 4 4 C 1.50697 * 109.46951 * 239.99690 * 2 1 3 5 5 N 1.30521 * 126.34668 * 60.02820 * 4 2 1 6 6 N 1.28591 * 109.67722 * 179.97438 * 5 4 2 7 7 C 1.30529 * 109.67272 * 0.02562 * 6 5 4 8 8 C 1.50692 * 126.34932 * 179.97438 * 7 6 5 9 9 N 1.46904 * 109.47194 * 89.97380 * 8 7 6 10 10 C 1.46898 * 110.99883 * 66.04666 * 9 8 7 11 11 C 1.46898 * 111.00341 * 190.00151 * 9 8 7 12 12 H 1.09004 * 109.47025 * 54.99493 * 11 9 8 13 13 C 1.53002 * 109.47029 * 294.99916 * 11 9 8 14 14 C 1.50700 * 109.47460 * 174.99879 * 11 9 8 15 15 H 1.07995 * 119.99915 * 114.92717 * 14 11 9 16 16 C 1.37874 * 120.00045 * 294.93269 * 14 11 9 17 17 N 1.31513 * 120.00135 * 179.97438 * 16 14 11 18 18 Si 1.86807 * 119.99962 * 359.95013 * 16 14 11 19 19 H 1.48501 * 109.47090 * 84.87016 * 18 16 14 20 20 H 1.48503 * 109.46867 * 204.86818 * 18 16 14 21 21 H 1.48494 * 109.46976 * 324.86918 * 18 16 14 22 22 N 1.35495 * 107.30307 * 359.76964 * 7 6 5 23 23 C 1.46500 * 126.98133 * 180.22404 * 22 7 6 24 24 H 1.09000 * 109.47115 * 299.99887 * 1 2 3 25 25 H 1.09001 * 109.47315 * 180.02562 * 1 2 3 26 26 H 1.08996 * 109.47278 * 60.00042 * 1 2 3 27 27 H 1.09001 * 109.46918 * 120.00243 * 2 1 3 28 28 H 1.09000 * 109.47030 * 60.00061 * 3 2 1 29 29 H 1.09001 * 109.46953 * 180.02562 * 3 2 1 30 30 H 1.08996 * 109.47007 * 300.00124 * 3 2 1 31 31 H 1.08994 * 109.47388 * 209.97217 * 8 7 6 32 32 H 1.08997 * 109.47173 * 329.97478 * 8 7 6 33 33 H 1.08993 * 109.47353 * 59.99929 * 10 9 8 34 34 H 1.09000 * 109.46829 * 180.02562 * 10 9 8 35 35 H 1.09001 * 109.47262 * 299.99931 * 10 9 8 36 36 H 1.08994 * 109.47086 * 175.21867 * 13 11 9 37 37 H 1.08993 * 109.47464 * 295.22542 * 13 11 9 38 38 H 1.09007 * 109.46975 * 55.22363 * 13 11 9 39 39 H 0.96996 * 120.00184 * 179.97438 * 17 16 14 40 40 H 1.08998 * 109.47408 * 270.15957 * 23 22 7 41 41 H 1.09001 * 109.46767 * 30.16302 * 23 22 7 42 42 H 1.09007 * 109.47087 * 150.15469 * 23 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7105 -1.2304 5 7 1.7950 -0.3740 -2.4690 6 7 2.3797 -1.2005 -3.2618 7 6 3.0163 -2.1022 -2.5650 8 6 3.8260 -3.2481 -3.1146 9 7 5.2203 -2.8213 -3.2933 10 6 5.8532 -2.5352 -1.9989 11 6 5.9863 -3.8255 -4.0434 12 1 5.4857 -4.0322 -4.9893 13 6 6.0788 -5.1137 -3.2231 14 6 7.3731 -3.3010 -4.3131 15 1 8.2297 -3.7862 -3.8691 16 6 7.5484 -2.2017 -5.1265 17 7 8.7586 -1.7437 -5.3615 18 14 6.0668 -1.3632 -5.8955 19 1 5.4964 -0.3861 -4.9337 20 1 6.4854 -0.6544 -7.1315 21 1 5.0409 -2.3824 -6.2327 22 7 2.8179 -1.8141 -1.2560 23 6 3.3438 -2.5483 -0.1025 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3633 0.5138 -0.8899 27 1 1.8933 -0.5139 0.8900 28 1 1.6767 1.9563 0.8900 29 1 3.1300 1.4425 -0.0005 30 1 1.6767 1.9563 -0.8899 31 1 3.7890 -4.0860 -2.4184 32 1 3.4143 -3.5559 -4.0757 33 1 5.8391 -3.4331 -1.3812 34 1 6.8844 -2.2210 -2.1603 35 1 5.3058 -1.7388 -1.4948 36 1 6.5729 -5.8854 -3.8132 37 1 6.6531 -4.9264 -2.3159 38 1 5.0759 -5.4470 -2.9559 39 1 8.8819 -0.9706 -5.9340 40 1 2.6373 -3.3267 0.1856 41 1 4.2985 -3.0035 -0.3662 42 1 3.4871 -1.8609 0.7312 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000161793983.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:38:14 Heat of formation + Delta-G solvation = 58.243583 kcal Electronic energy + Delta-G solvation = -21494.082921 eV Core-core repulsion = 18509.916286 eV Total energy + Delta-G solvation = -2984.166635 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.180 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -44.17510 -39.26285 -36.77468 -35.91334 -34.54986 -32.42845 -30.65932 -28.90182 -28.08602 -27.94399 -27.36534 -25.47013 -24.41479 -21.95700 -20.93807 -20.69152 -18.92924 -17.98008 -17.73431 -16.73396 -16.26185 -16.23113 -15.78611 -15.36674 -15.08833 -14.80615 -14.46086 -14.31796 -13.98001 -13.84824 -13.74864 -13.20352 -13.04161 -12.81901 -12.81457 -12.69545 -12.60254 -12.30626 -12.24142 -12.19081 -11.99597 -11.86109 -11.69103 -11.21886 -11.16067 -11.05416 -10.78492 -10.08201 -8.97029 -8.29019 -6.35981 0.78943 1.41593 1.49421 1.54338 1.64048 1.84061 2.43944 2.95984 3.22301 3.42725 3.54190 3.72595 3.78682 4.06377 4.11087 4.24931 4.30447 4.36692 4.41461 4.50974 4.57911 4.63952 4.64946 4.73417 4.77217 4.77919 4.86131 4.91096 4.99564 5.02469 5.11200 5.18250 5.30898 5.31556 5.41138 5.45859 5.63572 5.95733 6.04700 6.36709 6.52917 6.79195 7.39254 7.78099 8.83619 Molecular weight = 266.18amu Principal moments of inertia in cm(-1) A = 0.024734 B = 0.006106 C = 0.005580 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1131.768075 B = 4584.621059 C = 5016.908313 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.002 4.002 3 C -0.140 4.140 4 C 0.180 3.820 5 N -0.339 5.339 6 N -0.340 5.340 7 C 0.188 3.812 8 C 0.137 3.863 9 N -0.556 5.556 10 C 0.045 3.955 11 C 0.173 3.827 12 H 0.040 0.960 13 C -0.155 4.155 14 C -0.500 4.500 15 H 0.045 0.955 16 C 0.043 3.957 17 N -0.942 5.942 18 Si 0.967 3.033 19 H -0.293 1.293 20 H -0.318 1.318 21 H -0.260 1.260 22 N -0.468 5.468 23 C 0.050 3.950 24 H 0.096 0.904 25 H 0.054 0.946 26 H 0.046 0.954 27 H 0.118 0.882 28 H 0.098 0.902 29 H 0.044 0.956 30 H 0.045 0.955 31 H 0.085 0.915 32 H 0.092 0.908 33 H 0.052 0.948 34 H 0.051 0.949 35 H 0.046 0.954 36 H 0.053 0.947 37 H 0.052 0.948 38 H 0.065 0.935 39 H 0.262 0.738 40 H 0.108 0.892 41 H 0.097 0.903 42 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.623 -2.174 18.025 23.952 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.023 4.023 3 C -0.198 4.198 4 C -0.089 4.089 5 N -0.178 5.178 6 N -0.179 5.179 7 C -0.081 4.081 8 C 0.007 3.993 9 N -0.283 5.283 10 C -0.103 4.103 11 C 0.067 3.933 12 H 0.057 0.943 13 C -0.214 4.214 14 C -0.538 4.538 15 H 0.063 0.937 16 C -0.157 4.157 17 N -0.582 5.582 18 Si 0.799 3.201 19 H -0.220 1.220 20 H -0.247 1.247 21 H -0.184 1.184 22 N -0.158 5.158 23 C -0.091 4.091 24 H 0.114 0.886 25 H 0.073 0.927 26 H 0.065 0.935 27 H 0.136 0.864 28 H 0.117 0.883 29 H 0.063 0.937 30 H 0.064 0.936 31 H 0.103 0.897 32 H 0.110 0.890 33 H 0.070 0.930 34 H 0.070 0.930 35 H 0.064 0.936 36 H 0.073 0.927 37 H 0.071 0.929 38 H 0.083 0.917 39 H 0.071 0.929 40 H 0.127 0.873 41 H 0.115 0.885 42 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -16.051 -0.907 16.479 23.021 hybrid contribution 0.512 -0.535 0.387 0.835 sum -15.539 -1.442 16.866 22.978 Atomic orbital electron populations 1.21760 0.91813 1.02377 1.03308 1.19851 0.97467 0.95530 0.89418 1.21798 1.00527 0.94085 1.03354 1.25521 0.96102 0.89062 0.98188 1.74047 1.22098 1.22213 0.99459 1.74147 1.12680 1.03516 1.27591 1.24879 1.01383 1.00575 0.81289 1.20455 0.87944 0.89589 1.01311 1.62289 1.00262 1.46087 1.19645 1.22195 0.99639 0.99067 0.89397 1.19752 0.91870 0.88321 0.93313 0.94256 1.22160 1.01020 0.97777 1.00396 1.21112 0.91792 1.12715 1.28194 0.93687 1.25541 0.96941 0.97123 0.96087 1.70038 1.23194 1.25650 1.39340 0.85398 0.80222 0.78951 0.75558 1.22019 1.24748 1.18446 1.46223 1.38244 1.23256 1.08071 1.22721 1.01988 0.98467 0.85894 0.88559 0.92680 0.93503 0.86443 0.88280 0.93715 0.93607 0.89706 0.88989 0.93031 0.93037 0.93564 0.92748 0.92914 0.91661 0.92868 0.87325 0.88497 0.86475 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.06 9.18 71.98 0.66 -1.40 16 2 C 0.00 -0.03 3.27 -11.54 -0.04 -0.07 16 3 C -0.14 -2.51 9.18 71.98 0.66 -1.85 16 4 C 0.18 5.11 6.54 137.98 0.90 6.02 16 5 N -0.34 -13.07 12.21 -50.16 -0.61 -13.68 16 6 N -0.34 -14.57 12.21 -50.16 -0.61 -15.19 16 7 C 0.19 6.64 6.66 137.97 0.92 7.55 16 8 C 0.14 4.55 4.65 85.55 0.40 4.95 16 9 N -0.56 -22.58 2.78 -906.07 -2.52 -25.11 16 10 C 0.04 1.60 7.24 127.69 0.92 2.53 16 11 C 0.17 7.49 1.70 44.17 0.08 7.56 16 12 H 0.04 1.80 6.80 -2.38 -0.02 1.78 16 13 C -0.15 -5.19 8.40 71.98 0.60 -4.58 16 14 C -0.50 -27.21 7.76 25.60 0.20 -27.01 16 15 H 0.04 2.66 7.99 -2.91 -0.02 2.64 16 16 C 0.04 2.53 5.47 84.65 0.46 2.99 16 17 N -0.94 -59.36 13.96 21.45 0.30 -59.06 16 18 Si 0.97 52.16 26.26 68.60 1.80 53.97 16 19 H -0.29 -16.83 7.11 99.48 0.71 -16.12 16 20 H -0.32 -17.27 7.11 99.48 0.71 -16.56 16 21 H -0.26 -13.32 6.52 99.48 0.65 -12.67 16 22 N -0.47 -12.48 2.77 -527.24 -1.46 -13.95 16 23 C 0.05 0.74 9.83 127.77 1.26 2.00 16 24 H 0.10 0.88 8.14 -2.39 -0.02 0.86 16 25 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 26 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 27 H 0.12 1.25 6.89 -2.39 -0.02 1.23 16 28 H 0.10 1.11 8.14 -2.39 -0.02 1.09 16 29 H 0.04 0.90 8.14 -2.39 -0.02 0.88 16 30 H 0.04 1.04 8.14 -2.39 -0.02 1.02 16 31 H 0.09 2.14 6.56 -2.39 -0.02 2.12 16 32 H 0.09 3.20 8.00 -2.39 -0.02 3.18 16 33 H 0.05 1.46 5.63 -2.39 -0.01 1.45 16 34 H 0.05 2.25 6.99 -2.39 -0.02 2.23 16 35 H 0.05 1.56 5.82 -2.39 -0.01 1.54 16 36 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 37 H 0.05 1.73 6.75 -2.39 -0.02 1.71 16 38 H 0.06 1.72 6.53 -2.38 -0.02 1.71 16 39 H 0.26 15.87 8.31 -92.71 -0.77 15.10 16 40 H 0.11 1.02 8.14 -2.39 -0.02 1.00 16 41 H 0.10 1.55 4.68 -2.39 -0.01 1.54 16 42 H 0.12 1.09 7.18 -2.38 -0.02 1.08 16 Total: -1.00 -78.81 324.06 4.86 -73.95 By element: Atomic # 1 Polarization: -0.58 SS G_CDS: 0.94 Total: 0.36 kcal Atomic # 6 Polarization: -8.34 SS G_CDS: 7.02 Total: -1.31 kcal Atomic # 7 Polarization: -122.06 SS G_CDS: -4.91 Total: -126.97 kcal Atomic # 14 Polarization: 52.16 SS G_CDS: 1.80 Total: 53.97 kcal Total: -78.81 4.86 -73.95 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000161793983.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.197 kcal (2) G-P(sol) polarization free energy of solvation -78.811 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.387 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.857 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.954 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.244 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds