Wall clock time and date at job start Mon Mar 30 2020 00:45:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48496 * 109.47341 * 179.97438 * 3 2 1 5 5 H 1.48508 * 109.46983 * 299.99446 * 3 2 1 6 6 H 1.48503 * 109.47491 * 59.99259 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 C 1.52996 * 109.47159 * 179.72211 * 9 7 2 11 11 N 1.46896 * 109.47256 * 180.02562 * 10 9 7 12 12 C 1.46956 * 110.99700 * 293.79427 * 11 10 9 13 13 C 1.53049 * 109.36630 * 176.81026 * 12 11 10 14 14 N 1.46963 * 109.36171 * 58.40184 * 13 12 11 15 15 C 1.46896 * 111.00029 * 176.81114 * 14 13 12 16 16 C 1.53003 * 109.47291 * 58.79906 * 15 14 13 17 17 C 1.52994 * 109.47425 * 180.02562 * 16 15 14 18 18 C 1.52999 * 109.47227 * 60.00072 * 17 16 15 19 19 C 1.52996 * 109.47121 * 300.00312 * 18 17 16 20 20 C 1.52994 * 109.47324 * 59.99748 * 19 18 17 21 21 C 1.46948 * 110.88098 * 300.68193 * 14 13 12 22 22 C 1.46961 * 111.00124 * 170.00033 * 11 10 9 23 23 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 24 24 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 25 25 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 26 26 H 1.09004 * 109.47066 * 299.99797 * 10 9 7 27 27 H 1.09000 * 109.47234 * 59.99288 * 10 9 7 28 28 H 1.08999 * 109.49195 * 296.77993 * 12 11 10 29 29 H 1.09002 * 109.48564 * 56.84551 * 12 11 10 30 30 H 1.09000 * 109.49067 * 298.43979 * 13 12 11 31 31 H 1.09001 * 109.49268 * 178.36932 * 13 12 11 32 32 H 1.08999 * 109.47341 * 178.80108 * 15 14 13 33 33 H 1.08999 * 109.47093 * 300.00354 * 16 15 14 34 34 H 1.09005 * 109.46317 * 60.00096 * 16 15 14 35 35 H 1.09006 * 109.46825 * 300.00305 * 17 16 15 36 36 H 1.08998 * 109.47164 * 180.02562 * 17 16 15 37 37 H 1.09003 * 109.47106 * 180.02562 * 18 17 16 38 38 H 1.08999 * 109.46911 * 59.99948 * 18 17 16 39 39 H 1.08999 * 109.46931 * 299.99625 * 19 18 17 40 40 H 1.09001 * 109.47053 * 179.97438 * 19 18 17 41 41 H 1.08998 * 109.47164 * 179.97438 * 20 19 18 42 42 H 1.08999 * 109.47217 * 60.00051 * 20 19 18 43 43 H 1.08999 * 109.48998 * 299.35229 * 21 14 13 44 44 H 1.09002 * 109.48626 * 179.28754 * 21 14 13 45 45 H 1.09001 * 109.48531 * 303.15255 * 22 11 10 46 46 H 1.09000 * 109.48854 * 63.21719 * 22 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3462 0.0006 5 1 1.8906 2.3963 -1.2126 6 1 1.8905 2.3965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 6 2.2451 -3.6622 -0.0104 11 7 1.5105 -4.9343 -0.0168 12 6 0.7673 -5.1195 1.2374 13 6 -0.0453 -6.4140 1.1593 14 7 0.8616 -7.5446 0.9160 15 6 0.1270 -8.8168 0.9098 16 6 -0.9505 -8.7782 -0.1758 17 6 -1.7160 -10.1029 -0.1819 18 6 -2.3741 -10.3180 1.1825 19 6 -1.2966 -10.3565 2.2680 20 6 -0.5312 -9.0318 2.2741 21 6 1.6048 -7.3594 -0.3380 22 6 2.4174 -6.0649 -0.2600 23 1 -0.4850 0.8401 -0.0004 24 1 0.6242 -2.5609 0.8844 25 1 0.6244 -2.5529 -0.8956 26 1 2.8718 -3.6005 -0.9002 27 1 2.8717 -3.6084 0.8798 28 1 1.4682 -5.1797 2.0700 29 1 0.0938 -4.2759 1.3889 30 1 -0.7649 -6.3431 0.3437 31 1 -0.5748 -6.5684 2.0995 32 1 0.8184 -9.6346 0.7065 33 1 -1.6419 -7.9604 0.0275 34 1 -0.4816 -8.6246 -1.1477 35 1 -1.0248 -10.9210 -0.3849 36 1 -2.4833 -10.0755 -0.9555 37 1 -2.9191 -11.2620 1.1783 38 1 -3.0652 -9.4999 1.3855 39 1 -0.6055 -11.1746 2.0650 40 1 -1.7655 -10.5093 3.2401 41 1 0.2361 -9.0591 3.0478 42 1 -1.2223 -8.2138 2.4771 43 1 0.9039 -7.2992 -1.1706 44 1 2.2783 -8.2030 -0.4895 45 1 2.9469 -5.9105 -1.2002 46 1 3.1370 -6.1358 0.5556 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000163279651.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:45:45 Heat of formation + Delta-G solvation = -14.726972 kcal Electronic energy + Delta-G solvation = -21105.359137 eV Core-core repulsion = 18221.568604 eV Total energy + Delta-G solvation = -2883.790532 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 266.205 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.94823 -37.72148 -34.97685 -32.93344 -31.12986 -30.64467 -30.31219 -28.64459 -25.75714 -23.68272 -23.55469 -22.67793 -21.66488 -20.29786 -19.93980 -18.76375 -16.62423 -16.15317 -15.21806 -14.88992 -14.69249 -14.50654 -14.37223 -14.33727 -14.09922 -13.74495 -13.45962 -13.03093 -12.60614 -12.40160 -12.18631 -12.01767 -11.67765 -11.44686 -11.39586 -11.18117 -10.98207 -10.88681 -10.80493 -10.64053 -10.55603 -10.41950 -10.29727 -10.07319 -9.78794 -9.30809 -9.07819 -8.31381 -8.13959 -7.65327 -5.97867 -3.99877 3.32384 3.39715 3.43919 3.94218 4.40972 4.52542 4.58862 4.62123 4.79393 4.97532 5.06609 5.18073 5.29625 5.31832 5.36075 5.38097 5.40727 5.48143 5.53275 5.59439 5.64454 5.71993 5.81754 5.86259 5.91353 5.93499 6.00939 6.02520 6.09341 6.14205 6.25219 6.25554 6.29953 6.39553 6.48054 6.55951 7.00492 7.17582 7.19697 7.56450 7.62649 7.83586 7.93006 8.10980 8.46247 9.07594 9.63626 11.13567 Molecular weight = 266.21amu Principal moments of inertia in cm(-1) A = 0.038867 B = 0.003470 C = 0.003361 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 720.241410 B = 8067.890176 C = 8328.457562 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.057 3.943 3 Si 0.892 3.108 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.520 4.520 8 H 0.054 0.946 9 C 0.028 3.972 10 C 0.064 3.936 11 N -0.540 5.540 12 C 0.057 3.943 13 C 0.054 3.946 14 N -0.534 5.534 15 C 0.088 3.912 16 C -0.155 4.155 17 C -0.114 4.114 18 C -0.121 4.121 19 C -0.117 4.117 20 C -0.113 4.113 21 C 0.058 3.942 22 C 0.056 3.944 23 H 0.259 0.741 24 H 0.017 0.983 25 H 0.023 0.977 26 H 0.059 0.941 27 H 0.020 0.980 28 H 0.033 0.967 29 H 0.088 0.912 30 H 0.045 0.955 31 H 0.076 0.924 32 H 0.077 0.923 33 H 0.067 0.933 34 H 0.063 0.937 35 H 0.059 0.941 36 H 0.059 0.941 37 H 0.058 0.942 38 H 0.061 0.939 39 H 0.060 0.940 40 H 0.061 0.939 41 H 0.068 0.932 42 H 0.065 0.935 43 H 0.043 0.957 44 H 0.070 0.930 45 H 0.073 0.927 46 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.201 -21.537 2.245 21.765 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.144 4.144 3 Si 0.720 3.280 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.559 4.559 8 H 0.072 0.928 9 C -0.009 4.009 10 C -0.063 4.063 11 N -0.265 5.265 12 C -0.071 4.071 13 C -0.074 4.074 14 N -0.258 5.258 15 C -0.021 4.021 16 C -0.194 4.194 17 C -0.152 4.152 18 C -0.158 4.158 19 C -0.155 4.155 20 C -0.151 4.151 21 C -0.070 4.070 22 C -0.073 4.073 23 H 0.069 0.931 24 H 0.035 0.965 25 H 0.042 0.958 26 H 0.078 0.922 27 H 0.038 0.962 28 H 0.051 0.949 29 H 0.107 0.893 30 H 0.063 0.937 31 H 0.094 0.906 32 H 0.095 0.905 33 H 0.086 0.914 34 H 0.082 0.918 35 H 0.078 0.922 36 H 0.078 0.922 37 H 0.077 0.923 38 H 0.080 0.920 39 H 0.079 0.921 40 H 0.080 0.920 41 H 0.087 0.913 42 H 0.083 0.917 43 H 0.061 0.939 44 H 0.089 0.911 45 H 0.091 0.909 46 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -2.321 -21.399 2.248 21.642 hybrid contribution 0.449 1.000 -0.066 1.098 sum -1.872 -20.399 2.182 20.601 Atomic orbital electron populations 1.69985 1.06013 1.26412 1.50854 1.24997 0.94833 0.99175 0.95360 0.86545 0.80102 0.83842 0.77555 1.19779 1.21009 1.21047 1.21243 0.93019 0.91077 1.50589 0.92768 1.19090 0.93985 0.90146 0.97690 1.22311 0.96708 0.88372 0.98905 1.62260 1.27622 1.02486 1.34110 1.22164 0.97461 0.96779 0.90712 1.22267 0.94448 0.89957 1.00722 1.62416 1.27123 1.01839 1.34399 1.21692 0.93648 0.92179 0.94587 1.22247 0.99025 0.98159 0.99939 1.21456 0.99237 0.97421 0.97078 1.21552 0.97881 1.01441 0.94943 1.21511 0.97673 0.97685 0.98630 1.21606 0.99359 0.97298 0.96793 1.22144 0.96817 0.97324 0.90696 1.22110 0.94224 0.90404 1.00528 0.93092 0.96524 0.95823 0.92207 0.96208 0.94854 0.89343 0.93730 0.90610 0.90477 0.91389 0.91817 0.92207 0.92247 0.92279 0.92002 0.92108 0.91985 0.91293 0.91673 0.93860 0.91136 0.90856 0.94816 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.09 13.29 55.43 0.74 -26.35 16 2 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 3 Si 0.89 21.85 29.54 -169.99 -5.02 16.83 16 4 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 5 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 6 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 7 C -0.52 -14.94 9.11 -34.44 -0.31 -15.25 16 8 H 0.05 1.52 7.74 -52.49 -0.41 1.11 16 9 C 0.03 0.75 4.91 -27.88 -0.14 0.61 16 10 C 0.06 1.39 4.90 -3.83 -0.02 1.37 16 11 N -0.54 -10.18 4.71 -234.47 -1.10 -11.29 16 12 C 0.06 1.01 5.41 -3.77 -0.02 0.99 16 13 C 0.05 0.78 4.81 -3.76 -0.02 0.77 16 14 N -0.53 -7.07 4.70 -226.49 -1.06 -8.14 16 15 C 0.09 0.94 2.23 -67.71 -0.15 0.79 16 16 C -0.15 -1.62 4.50 -26.73 -0.12 -1.74 16 17 C -0.11 -0.98 5.92 -26.73 -0.16 -1.14 16 18 C -0.12 -0.98 5.92 -26.73 -0.16 -1.13 16 19 C -0.12 -0.95 5.92 -26.74 -0.16 -1.11 16 20 C -0.11 -1.11 5.01 -26.73 -0.13 -1.24 16 21 C 0.06 0.78 5.25 -3.77 -0.02 0.76 16 22 C 0.06 0.88 5.61 -3.77 -0.02 0.86 16 23 H 0.26 7.39 8.31 -40.82 -0.34 7.06 16 24 H 0.02 0.46 6.49 -51.93 -0.34 0.12 16 25 H 0.02 0.67 8.14 -51.93 -0.42 0.25 16 26 H 0.06 1.28 8.03 -51.93 -0.42 0.86 16 27 H 0.02 0.43 8.12 -51.93 -0.42 0.01 16 28 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.09 1.73 6.34 -51.93 -0.33 1.40 16 30 H 0.04 0.68 6.46 -51.93 -0.34 0.35 16 31 H 0.08 1.00 6.17 -51.93 -0.32 0.68 16 32 H 0.08 0.81 8.11 -51.93 -0.42 0.39 16 33 H 0.07 0.79 6.46 -51.93 -0.34 0.46 16 34 H 0.06 0.71 6.59 -51.93 -0.34 0.36 16 35 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 36 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 37 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 38 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 39 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 40 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 41 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 42 H 0.06 0.68 6.36 -51.93 -0.33 0.35 16 43 H 0.04 0.60 6.60 -51.93 -0.34 0.26 16 44 H 0.07 0.82 8.12 -51.93 -0.42 0.40 16 45 H 0.07 1.09 8.07 -51.93 -0.42 0.67 16 46 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 LS Contribution 337.91 15.07 5.09 5.09 Total: -1.00 -29.79 337.91 -11.43 -41.22 By element: Atomic # 1 Polarization: 5.07 SS G_CDS: -8.54 Total: -3.47 kcal Atomic # 6 Polarization: -12.37 SS G_CDS: -1.53 Total: -13.90 kcal Atomic # 7 Polarization: -44.34 SS G_CDS: -1.43 Total: -45.77 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.83 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -29.79 -11.43 -41.22 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000163279651.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.492 kcal (2) G-P(sol) polarization free energy of solvation -29.790 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.298 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.429 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.219 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.727 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds