Wall clock time and date at job start Mon Mar 30 2020 00:45:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48496 * 109.47341 * 179.97438 * 3 2 1 5 5 H 1.48508 * 109.46983 * 299.99446 * 3 2 1 6 6 H 1.48503 * 109.47491 * 59.99259 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 C 1.52996 * 109.47159 * 179.72211 * 9 7 2 11 11 N 1.46896 * 109.47256 * 180.02562 * 10 9 7 12 12 C 1.46956 * 110.99700 * 293.79427 * 11 10 9 13 13 C 1.53049 * 109.36630 * 176.81026 * 12 11 10 14 14 N 1.46963 * 109.36171 * 58.40184 * 13 12 11 15 15 C 1.46896 * 111.00029 * 176.81114 * 14 13 12 16 16 C 1.53003 * 109.47291 * 58.79906 * 15 14 13 17 17 C 1.52994 * 109.47425 * 180.02562 * 16 15 14 18 18 C 1.52999 * 109.47227 * 60.00072 * 17 16 15 19 19 C 1.52996 * 109.47121 * 300.00312 * 18 17 16 20 20 C 1.52994 * 109.47324 * 59.99748 * 19 18 17 21 21 C 1.46948 * 110.88098 * 300.68193 * 14 13 12 22 22 C 1.46961 * 111.00124 * 170.00033 * 11 10 9 23 23 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 24 24 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 25 25 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 26 26 H 1.09004 * 109.47066 * 299.99797 * 10 9 7 27 27 H 1.09000 * 109.47234 * 59.99288 * 10 9 7 28 28 H 1.08999 * 109.49195 * 296.77993 * 12 11 10 29 29 H 1.09002 * 109.48564 * 56.84551 * 12 11 10 30 30 H 1.09000 * 109.49067 * 298.43979 * 13 12 11 31 31 H 1.09001 * 109.49268 * 178.36932 * 13 12 11 32 32 H 1.08999 * 109.47341 * 178.80108 * 15 14 13 33 33 H 1.08999 * 109.47093 * 300.00354 * 16 15 14 34 34 H 1.09005 * 109.46317 * 60.00096 * 16 15 14 35 35 H 1.09006 * 109.46825 * 300.00305 * 17 16 15 36 36 H 1.08998 * 109.47164 * 180.02562 * 17 16 15 37 37 H 1.09003 * 109.47106 * 180.02562 * 18 17 16 38 38 H 1.08999 * 109.46911 * 59.99948 * 18 17 16 39 39 H 1.08999 * 109.46931 * 299.99625 * 19 18 17 40 40 H 1.09001 * 109.47053 * 179.97438 * 19 18 17 41 41 H 1.08998 * 109.47164 * 179.97438 * 20 19 18 42 42 H 1.08999 * 109.47217 * 60.00051 * 20 19 18 43 43 H 1.08999 * 109.48998 * 299.35229 * 21 14 13 44 44 H 1.09002 * 109.48626 * 179.28754 * 21 14 13 45 45 H 1.09001 * 109.48531 * 303.15255 * 22 11 10 46 46 H 1.09000 * 109.48854 * 63.21719 * 22 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3462 0.0006 5 1 1.8906 2.3963 -1.2126 6 1 1.8905 2.3965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 6 2.2451 -3.6622 -0.0104 11 7 1.5105 -4.9343 -0.0168 12 6 0.7673 -5.1195 1.2374 13 6 -0.0453 -6.4140 1.1593 14 7 0.8616 -7.5446 0.9160 15 6 0.1270 -8.8168 0.9098 16 6 -0.9505 -8.7782 -0.1758 17 6 -1.7160 -10.1029 -0.1819 18 6 -2.3741 -10.3180 1.1825 19 6 -1.2966 -10.3565 2.2680 20 6 -0.5312 -9.0318 2.2741 21 6 1.6048 -7.3594 -0.3380 22 6 2.4174 -6.0649 -0.2600 23 1 -0.4850 0.8401 -0.0004 24 1 0.6242 -2.5609 0.8844 25 1 0.6244 -2.5529 -0.8956 26 1 2.8718 -3.6005 -0.9002 27 1 2.8717 -3.6084 0.8798 28 1 1.4682 -5.1797 2.0700 29 1 0.0938 -4.2759 1.3889 30 1 -0.7649 -6.3431 0.3437 31 1 -0.5748 -6.5684 2.0995 32 1 0.8184 -9.6346 0.7065 33 1 -1.6419 -7.9604 0.0275 34 1 -0.4816 -8.6246 -1.1477 35 1 -1.0248 -10.9210 -0.3849 36 1 -2.4833 -10.0755 -0.9555 37 1 -2.9191 -11.2620 1.1783 38 1 -3.0652 -9.4999 1.3855 39 1 -0.6055 -11.1746 2.0650 40 1 -1.7655 -10.5093 3.2401 41 1 0.2361 -9.0591 3.0478 42 1 -1.2223 -8.2138 2.4771 43 1 0.9039 -7.2992 -1.1706 44 1 2.2783 -8.2030 -0.4895 45 1 2.9469 -5.9105 -1.2002 46 1 3.1370 -6.1358 0.5556 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000163279651.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:45:45 Heat of formation + Delta-G solvation = -33.311090 kcal Electronic energy + Delta-G solvation = -21106.165005 eV Core-core repulsion = 18221.568604 eV Total energy + Delta-G solvation = -2884.596400 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 266.205 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.99538 -38.89462 -36.30485 -34.91918 -32.29899 -31.89500 -31.50196 -29.99803 -27.29450 -25.37631 -24.82917 -23.55306 -22.62264 -21.97225 -21.01233 -19.84223 -18.61744 -17.38638 -16.58962 -16.31552 -16.01640 -15.94521 -15.58954 -15.30493 -15.14770 -14.92905 -14.70780 -14.29988 -14.19654 -13.73839 -13.35797 -13.11803 -13.03470 -12.83071 -12.78816 -12.52349 -12.41372 -12.32461 -12.05731 -11.86848 -11.82616 -11.61206 -11.40408 -11.25491 -11.17752 -11.12133 -10.91461 -10.54940 -9.29300 -9.11451 -8.20812 -6.32176 1.39713 1.40137 1.53639 2.39737 2.91060 3.06282 3.12521 3.73970 3.82947 3.95350 4.10181 4.11234 4.15492 4.26825 4.31763 4.40944 4.45576 4.49015 4.56568 4.57559 4.62610 4.64834 4.72726 4.74541 4.82990 4.90011 4.94648 5.01627 5.03419 5.11755 5.18903 5.20979 5.25344 5.26595 5.36562 5.44305 5.46372 5.55925 5.64638 5.76709 6.04601 6.06294 6.20699 6.31487 6.34002 6.84790 7.36865 8.91561 Molecular weight = 266.21amu Principal moments of inertia in cm(-1) A = 0.038867 B = 0.003470 C = 0.003361 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 720.241410 B = 8067.890176 C = 8328.457562 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.001 3.999 3 Si 0.968 3.032 4 H -0.262 1.262 5 H -0.277 1.277 6 H -0.277 1.277 7 C -0.544 4.544 8 H 0.059 0.941 9 C 0.038 3.962 10 C 0.080 3.920 11 N -0.551 5.551 12 C 0.060 3.940 13 C 0.067 3.933 14 N -0.539 5.539 15 C 0.089 3.911 16 C -0.151 4.151 17 C -0.110 4.110 18 C -0.120 4.120 19 C -0.112 4.112 20 C -0.111 4.111 21 C 0.064 3.936 22 C 0.056 3.944 23 H 0.264 0.736 24 H -0.007 1.007 25 H -0.009 1.009 26 H 0.064 0.936 27 H 0.018 0.982 28 H 0.030 0.970 29 H 0.059 0.941 30 H 0.034 0.966 31 H 0.089 0.911 32 H 0.089 0.911 33 H 0.050 0.950 34 H 0.056 0.944 35 H 0.070 0.930 36 H 0.061 0.939 37 H 0.073 0.927 38 H 0.053 0.947 39 H 0.070 0.930 40 H 0.070 0.930 41 H 0.066 0.934 42 H 0.054 0.946 43 H 0.037 0.963 44 H 0.098 0.902 45 H 0.083 0.917 46 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.234 -23.008 2.335 23.159 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.197 4.197 3 Si 0.792 3.208 4 H -0.186 1.186 5 H -0.203 1.203 6 H -0.203 1.203 7 C -0.583 4.583 8 H 0.078 0.922 9 C 0.001 3.999 10 C -0.047 4.047 11 N -0.276 5.276 12 C -0.069 4.069 13 C -0.061 4.061 14 N -0.262 5.262 15 C -0.018 4.018 16 C -0.190 4.190 17 C -0.148 4.148 18 C -0.157 4.157 19 C -0.150 4.150 20 C -0.149 4.149 21 C -0.064 4.064 22 C -0.072 4.072 23 H 0.072 0.928 24 H 0.012 0.988 25 H 0.009 0.991 26 H 0.083 0.917 27 H 0.036 0.964 28 H 0.048 0.952 29 H 0.078 0.922 30 H 0.052 0.948 31 H 0.107 0.893 32 H 0.107 0.893 33 H 0.069 0.931 34 H 0.075 0.925 35 H 0.089 0.911 36 H 0.080 0.920 37 H 0.092 0.908 38 H 0.071 0.929 39 H 0.089 0.911 40 H 0.089 0.911 41 H 0.085 0.915 42 H 0.073 0.927 43 H 0.056 0.944 44 H 0.116 0.884 45 H 0.101 0.899 46 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -1.349 -22.901 2.338 23.059 hybrid contribution 0.115 1.419 -0.095 1.427 sum -1.234 -21.481 2.243 21.633 Atomic orbital electron populations 1.70122 1.07825 1.27711 1.51472 1.25978 0.95777 1.03362 0.94607 0.85363 0.79031 0.78591 0.77827 1.18573 1.20276 1.20303 1.21651 0.93500 0.92273 1.50839 0.92234 1.18903 0.94160 0.91954 0.94927 1.21954 0.95367 0.88453 0.98938 1.62191 1.28255 1.02449 1.34734 1.22098 0.97049 0.97537 0.90177 1.22078 0.93860 0.89100 1.01074 1.62431 1.27163 1.02240 1.34395 1.21773 0.93804 0.90959 0.95305 1.22189 0.98712 0.98759 0.99334 1.21440 0.99319 0.96487 0.97594 1.21554 0.97807 1.01877 0.94510 1.21486 0.97632 0.96752 0.99139 1.21590 0.99175 0.98092 0.96013 1.22128 0.96879 0.96888 0.90541 1.22218 0.94060 0.90055 1.00909 0.92752 0.98827 0.99090 0.91736 0.96420 0.95206 0.92249 0.94762 0.89331 0.89258 0.93119 0.92516 0.91118 0.92029 0.90826 0.92863 0.91131 0.91134 0.91546 0.92729 0.94436 0.88418 0.89904 0.94818 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.76 13.29 21.45 0.28 -57.48 16 2 C 0.00 0.04 5.46 84.66 0.46 0.50 16 3 Si 0.97 44.97 29.54 68.60 2.03 46.99 16 4 H -0.26 -11.59 7.11 99.48 0.71 -10.88 16 5 H -0.28 -12.51 7.11 99.48 0.71 -11.81 16 6 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 7 C -0.54 -31.83 9.11 25.60 0.23 -31.60 16 8 H 0.06 3.34 7.74 -2.91 -0.02 3.32 16 9 C 0.04 2.10 4.91 29.85 0.15 2.24 16 10 C 0.08 3.57 4.90 86.30 0.42 4.00 16 11 N -0.55 -21.14 4.71 -895.72 -4.22 -25.36 16 12 C 0.06 2.19 5.41 86.31 0.47 2.65 16 13 C 0.07 1.96 4.81 86.31 0.42 2.38 16 14 N -0.54 -13.59 4.70 -870.48 -4.09 -17.67 16 15 C 0.09 1.77 2.23 44.92 0.10 1.87 16 16 C -0.15 -2.97 4.50 30.59 0.14 -2.83 16 17 C -0.11 -1.68 5.92 30.59 0.18 -1.50 16 18 C -0.12 -1.68 5.92 30.59 0.18 -1.50 16 19 C -0.11 -1.55 5.92 30.59 0.18 -1.37 16 20 C -0.11 -1.99 5.01 30.59 0.15 -1.84 16 21 C 0.06 1.60 5.25 86.31 0.45 2.05 16 22 C 0.06 1.68 5.61 86.31 0.48 2.17 16 23 H 0.26 15.27 8.31 -92.70 -0.77 14.49 16 24 H -0.01 -0.39 6.49 -2.38 -0.02 -0.40 16 25 H -0.01 -0.57 8.14 -2.39 -0.02 -0.59 16 26 H 0.06 2.78 8.03 -2.38 -0.02 2.76 16 27 H 0.02 0.78 8.12 -2.39 -0.02 0.77 16 28 H 0.03 1.10 8.14 -2.39 -0.02 1.08 16 29 H 0.06 2.48 6.34 -2.39 -0.02 2.47 16 30 H 0.03 1.08 6.46 -2.39 -0.02 1.06 16 31 H 0.09 2.35 6.17 -2.39 -0.01 2.34 16 32 H 0.09 1.61 8.11 -2.39 -0.02 1.59 16 33 H 0.05 1.17 6.46 -2.39 -0.02 1.16 16 34 H 0.06 1.19 6.59 -2.38 -0.02 1.18 16 35 H 0.07 0.95 8.14 -2.38 -0.02 0.93 16 36 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 37 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 38 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 39 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 40 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 41 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 42 H 0.05 1.09 6.36 -2.39 -0.02 1.08 16 43 H 0.04 1.00 6.60 -2.39 -0.02 0.99 16 44 H 0.10 1.97 8.12 -2.39 -0.02 1.95 16 45 H 0.08 2.34 8.07 -2.39 -0.02 2.32 16 46 H 0.03 1.03 8.14 -2.39 -0.02 1.01 16 Total: -1.00 -64.80 337.91 -1.06 -65.86 By element: Atomic # 1 Polarization: 9.53 SS G_CDS: 0.91 Total: 10.45 kcal Atomic # 6 Polarization: -26.80 SS G_CDS: 4.02 Total: -22.78 kcal Atomic # 7 Polarization: -92.49 SS G_CDS: -8.02 Total: -100.51 kcal Atomic # 14 Polarization: 44.97 SS G_CDS: 2.03 Total: 46.99 kcal Total: -64.80 -1.06 -65.86 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000163279651.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.548 kcal (2) G-P(sol) polarization free energy of solvation -64.795 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.247 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.064 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.859 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.311 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds