Wall clock time and date at job start Mon Mar 30 2020 00:44:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86799 * 119.99995 * 2 1 4 4 H 1.48493 * 109.47486 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.46871 * 300.00272 * 3 2 1 6 6 H 1.48501 * 109.47336 * 59.99876 * 3 2 1 7 7 C 1.37875 * 120.00055 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00152 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00147 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47125 * 180.02562 * 9 7 2 11 11 N 1.46905 * 109.46966 * 179.97438 * 10 9 7 12 12 C 1.47901 * 111.00267 * 297.96917 * 11 10 9 13 13 C 1.50799 * 108.49873 * 153.79293 * 12 11 10 14 14 C 1.53689 * 112.10433 * 92.54972 * 13 12 11 15 15 N 1.48067 * 112.47102 * 318.55365 * 14 13 12 16 16 C 1.46904 * 110.99703 * 192.20061 * 15 14 13 17 17 C 1.54269 * 110.03286 * 308.73634 * 16 15 14 18 18 C 1.54960 * 104.16109 * 217.14269 * 17 16 15 19 19 C 1.54892 * 102.77816 * 37.88749 * 18 17 16 20 20 C 1.53875 * 110.02698 * 191.52358 * 16 15 14 21 21 C 1.44576 * 113.85182 * 318.31342 * 15 14 13 22 22 C 1.40023 * 110.99817 * 169.99717 * 11 10 9 23 23 H 0.96997 * 119.99785 * 359.97438 * 1 2 3 24 24 H 1.09001 * 109.46939 * 299.99782 * 9 7 2 25 25 H 1.08996 * 109.47273 * 59.99622 * 9 7 2 26 26 H 1.09000 * 109.47691 * 299.99900 * 10 9 7 27 27 H 1.09007 * 109.47204 * 60.00014 * 10 9 7 28 28 H 1.09004 * 109.63416 * 273.49141 * 12 11 10 29 29 H 1.09002 * 109.63280 * 34.08311 * 12 11 10 30 30 H 1.08998 * 108.95443 * 331.86743 * 13 12 11 31 31 H 1.09001 * 108.88345 * 213.17853 * 13 12 11 32 32 H 1.09009 * 108.88513 * 197.77924 * 14 13 12 33 33 H 1.09007 * 108.80781 * 79.27243 * 14 13 12 34 34 H 1.08996 * 110.01743 * 70.13195 * 16 15 14 35 35 H 1.08994 * 110.48526 * 335.79147 * 17 16 15 36 36 H 1.08997 * 110.48154 * 98.43162 * 17 16 15 37 37 H 1.08999 * 110.71911 * 279.57606 * 18 17 16 38 38 H 1.08998 * 110.92264 * 156.29815 * 18 17 16 39 39 H 1.08998 * 110.48796 * 203.40824 * 19 18 17 40 40 H 1.09002 * 110.59349 * 80.81859 * 19 18 17 41 41 H 1.08994 * 110.03381 * 238.56778 * 20 16 15 42 42 H 1.09005 * 110.03552 * 0.02562 * 20 16 15 43 43 H 1.08996 * 109.57581 * 334.42672 * 21 15 14 44 44 H 1.08999 * 109.57257 * 214.03856 * 21 15 14 45 45 H 1.08996 * 108.95911 * 308.77419 * 22 11 10 46 46 H 1.09002 * 108.95371 * 67.51387 * 22 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8903 2.3964 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0017 10 6 2.2454 -3.6620 -0.0015 11 7 1.5109 -4.9342 -0.0020 12 6 0.6845 -5.0697 1.2171 13 6 -0.4777 -5.9798 0.9086 14 6 -0.1702 -7.4464 1.2496 15 7 1.2013 -7.8432 0.8570 16 6 1.3676 -9.3011 0.9259 17 6 0.9009 -9.8219 2.3009 18 6 1.9016 -10.9566 2.6362 19 6 3.2436 -10.3993 2.0999 20 6 2.8563 -9.6684 0.7978 21 6 1.6099 -7.3355 -0.4335 22 6 2.3750 -6.0124 -0.2288 23 1 -0.4850 0.8400 0.0004 24 1 0.6242 -2.5575 0.8880 25 1 0.6248 -2.5563 -0.8919 26 1 2.8728 -3.6039 -0.8909 27 1 2.8714 -3.6047 0.8891 28 1 1.2835 -5.5001 2.0197 29 1 0.3129 -4.0903 1.5184 30 1 -0.7139 -5.9049 -0.1528 31 1 -1.3428 -5.6556 1.4872 32 1 -0.8845 -8.0864 0.7315 33 1 -0.2846 -7.5889 2.3243 34 1 0.7952 -9.7799 0.1314 35 1 0.9577 -9.0303 3.0480 36 1 -0.1140 -10.2141 2.2359 37 1 1.6301 -11.8759 2.1172 38 1 1.9548 -11.1233 3.7120 39 1 3.9374 -11.2130 1.8887 40 1 3.6814 -9.7013 2.8135 41 1 3.0064 -10.3260 -0.0583 42 1 3.4555 -8.7648 0.6850 43 1 0.7297 -7.1565 -1.0509 44 1 2.2598 -8.0613 -0.9224 45 1 2.9716 -5.8071 -1.1176 46 1 3.0409 -6.1187 0.6276 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000172579781.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:44:38 Heat of formation + Delta-G solvation = -1.808382 kcal Electronic energy + Delta-G solvation = -21230.440303 eV Core-core repulsion = 18347.209963 eV Total energy + Delta-G solvation = -2883.230340 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 266.205 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.74868 -37.80153 -35.08665 -32.96439 -32.29214 -30.27621 -28.94489 -27.98525 -26.12945 -25.22874 -23.89974 -21.24309 -20.58543 -20.32769 -19.77305 -19.12177 -16.84066 -16.25525 -15.84164 -15.41974 -14.75474 -14.69542 -14.43561 -14.24286 -13.67724 -13.48410 -13.14641 -12.90714 -12.36465 -12.10465 -12.00891 -11.59609 -11.43199 -11.26178 -11.20501 -11.14799 -10.94154 -10.89909 -10.77859 -10.65334 -10.59492 -10.46695 -10.37936 -10.18973 -9.73601 -9.28718 -9.02864 -8.28527 -8.05937 -7.45381 -5.96046 -3.97758 3.33508 3.40868 3.45137 3.88163 4.41574 4.45822 4.50481 4.66044 4.80594 5.14702 5.18259 5.25788 5.32083 5.35476 5.39834 5.44976 5.48726 5.51314 5.56751 5.67329 5.70812 5.74354 5.78407 5.89917 5.93301 6.00186 6.08323 6.16202 6.18057 6.20913 6.22609 6.33099 6.40206 6.58097 6.65654 6.72000 7.05972 7.23908 7.36812 7.66185 7.78594 7.94005 8.10688 8.23627 8.49242 9.09934 9.65611 11.15355 Molecular weight = 266.21amu Principal moments of inertia in cm(-1) A = 0.040592 B = 0.003593 C = 0.003468 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 689.626303 B = 7790.974490 C = 8072.143425 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.057 3.943 3 Si 0.891 3.109 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.285 1.285 7 C -0.520 4.520 8 H 0.054 0.946 9 C 0.027 3.973 10 C 0.069 3.931 11 N -0.556 5.556 12 C 0.067 3.933 13 C -0.119 4.119 14 C 0.065 3.935 15 N -0.545 5.545 16 C 0.086 3.914 17 C -0.119 4.119 18 C -0.124 4.124 19 C -0.120 4.120 20 C -0.119 4.119 21 C 0.062 3.938 22 C 0.083 3.917 23 H 0.259 0.741 24 H 0.019 0.981 25 H 0.023 0.977 26 H 0.057 0.943 27 H 0.018 0.982 28 H 0.039 0.961 29 H 0.085 0.915 30 H 0.071 0.929 31 H 0.067 0.933 32 H 0.026 0.974 33 H 0.068 0.932 34 H 0.037 0.963 35 H 0.078 0.922 36 H 0.060 0.940 37 H 0.063 0.937 38 H 0.065 0.935 39 H 0.060 0.940 40 H 0.067 0.933 41 H 0.059 0.941 42 H 0.077 0.923 43 H 0.050 0.950 44 H 0.066 0.934 45 H 0.063 0.937 46 H 0.020 0.980 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.082 -21.602 3.286 21.949 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.144 4.144 3 Si 0.719 3.281 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.211 1.211 7 C -0.559 4.559 8 H 0.072 0.928 9 C -0.010 4.010 10 C -0.057 4.057 11 N -0.280 5.280 12 C -0.060 4.060 13 C -0.158 4.158 14 C -0.061 4.061 15 N -0.270 5.270 16 C -0.022 4.022 17 C -0.157 4.157 18 C -0.161 4.161 19 C -0.158 4.158 20 C -0.157 4.157 21 C -0.067 4.067 22 C -0.048 4.048 23 H 0.069 0.931 24 H 0.037 0.963 25 H 0.041 0.959 26 H 0.076 0.924 27 H 0.036 0.964 28 H 0.057 0.943 29 H 0.103 0.897 30 H 0.090 0.910 31 H 0.086 0.914 32 H 0.044 0.956 33 H 0.086 0.914 34 H 0.055 0.945 35 H 0.097 0.903 36 H 0.079 0.921 37 H 0.081 0.919 38 H 0.083 0.917 39 H 0.079 0.921 40 H 0.085 0.915 41 H 0.078 0.922 42 H 0.095 0.905 43 H 0.068 0.932 44 H 0.085 0.915 45 H 0.081 0.919 46 H 0.038 0.962 Dipole moment (debyes) X Y Z Total from point charges 1.929 -21.284 3.219 21.613 hybrid contribution 0.408 0.581 -0.012 0.709 sum 2.336 -20.704 3.207 21.081 Atomic orbital electron populations 1.69984 1.05994 1.26370 1.50953 1.24993 0.94824 0.99143 0.95410 0.86556 0.80118 0.83907 0.77528 1.19786 1.21045 1.21073 1.21256 0.93027 0.91134 1.50445 0.92793 1.19145 0.94015 0.90206 0.97671 1.22239 0.96483 0.88282 0.98688 1.59266 1.27627 1.02902 1.38221 1.21763 0.94015 0.99775 0.90434 1.21476 0.98620 0.92958 1.02697 1.22397 0.87385 0.96184 1.00175 1.60911 1.25363 1.10023 1.30712 1.22266 0.95942 0.87403 0.96611 1.22496 0.98212 0.98029 0.96970 1.22469 0.95313 0.97794 1.00571 1.22294 0.96978 0.99285 0.97196 1.22248 0.95588 1.00464 0.97437 1.21972 0.99303 0.96123 0.89265 1.20880 0.93875 0.90459 0.99614 0.93125 0.96323 0.95859 0.92427 0.96397 0.94303 0.89692 0.91008 0.91439 0.95552 0.91351 0.94492 0.90340 0.92135 0.91860 0.91667 0.92082 0.91461 0.92240 0.90455 0.93197 0.91514 0.91883 0.96168 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.08 13.29 55.43 0.74 -26.34 16 2 C 0.06 1.66 5.46 -17.82 -0.10 1.57 16 3 Si 0.89 21.87 29.54 -169.99 -5.02 16.85 16 4 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 5 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 6 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 7 C -0.52 -14.92 9.11 -34.44 -0.31 -15.23 16 8 H 0.05 1.51 7.74 -52.48 -0.41 1.10 16 9 C 0.03 0.71 4.89 -27.89 -0.14 0.57 16 10 C 0.07 1.51 4.90 -3.82 -0.02 1.49 16 11 N -0.56 -10.42 4.10 -239.75 -0.98 -11.40 16 12 C 0.07 1.19 5.16 -4.38 -0.02 1.16 16 13 C -0.12 -1.77 5.36 -27.48 -0.15 -1.92 16 14 C 0.07 0.83 4.76 -2.82 -0.01 0.82 16 15 N -0.54 -6.94 3.74 -224.99 -0.84 -7.78 16 16 C 0.09 0.92 2.57 -66.59 -0.17 0.75 16 17 C -0.12 -1.13 5.34 -25.03 -0.13 -1.26 16 18 C -0.12 -1.01 6.91 -24.70 -0.17 -1.18 16 19 C -0.12 -1.04 6.83 -25.07 -0.17 -1.21 16 20 C -0.12 -1.17 5.52 -25.61 -0.14 -1.31 16 21 C 0.06 0.84 4.86 -4.44 -0.02 0.81 16 22 C 0.08 1.32 5.04 -6.75 -0.03 1.28 16 23 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 24 H 0.02 0.51 6.06 -51.93 -0.31 0.20 16 25 H 0.02 0.66 8.14 -51.93 -0.42 0.24 16 26 H 0.06 1.24 7.85 -51.93 -0.41 0.83 16 27 H 0.02 0.39 8.14 -51.92 -0.42 -0.03 16 28 H 0.04 0.68 7.57 -51.93 -0.39 0.29 16 29 H 0.08 1.71 5.61 -51.93 -0.29 1.42 16 30 H 0.07 1.16 7.23 -51.93 -0.38 0.79 16 31 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 32 H 0.03 0.32 8.03 -51.92 -0.42 -0.10 16 33 H 0.07 0.82 6.88 -51.93 -0.36 0.46 16 34 H 0.04 0.40 8.14 -51.93 -0.42 -0.02 16 35 H 0.08 0.83 7.15 -51.93 -0.37 0.46 16 36 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 38 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 39 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 40 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 41 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 42 H 0.08 0.86 7.19 -51.93 -0.37 0.49 16 43 H 0.05 0.73 6.93 -51.93 -0.36 0.37 16 44 H 0.07 0.79 6.51 -51.93 -0.34 0.45 16 45 H 0.06 0.98 7.82 -51.93 -0.41 0.57 16 46 H 0.02 0.34 8.06 -51.93 -0.42 -0.08 16 LS Contribution 339.05 15.07 5.11 5.11 Total: -1.00 -29.64 339.05 -11.18 -40.83 By element: Atomic # 1 Polarization: 5.00 SS G_CDS: -8.59 Total: -3.59 kcal Atomic # 6 Polarization: -12.07 SS G_CDS: -1.59 Total: -13.67 kcal Atomic # 7 Polarization: -44.44 SS G_CDS: -1.09 Total: -45.53 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.85 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -29.64 -11.18 -40.83 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000172579781.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.019 kcal (2) G-P(sol) polarization free energy of solvation -29.644 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.375 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.184 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.828 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.808 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds