Wall clock time and date at job start Mon Mar 30 2020 00:44:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86799 * 119.99995 * 2 1 4 4 H 1.48493 * 109.47486 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.46871 * 300.00272 * 3 2 1 6 6 H 1.48501 * 109.47336 * 59.99876 * 3 2 1 7 7 C 1.37875 * 120.00055 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00152 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00147 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47125 * 180.02562 * 9 7 2 11 11 N 1.46905 * 109.46966 * 179.97438 * 10 9 7 12 12 C 1.47901 * 111.00267 * 297.96917 * 11 10 9 13 13 C 1.50799 * 108.49873 * 153.79293 * 12 11 10 14 14 C 1.53689 * 112.10433 * 92.54972 * 13 12 11 15 15 N 1.48067 * 112.47102 * 318.55365 * 14 13 12 16 16 C 1.46904 * 110.99703 * 192.20061 * 15 14 13 17 17 C 1.54269 * 110.03286 * 308.73634 * 16 15 14 18 18 C 1.54960 * 104.16109 * 217.14269 * 17 16 15 19 19 C 1.54892 * 102.77816 * 37.88749 * 18 17 16 20 20 C 1.53875 * 110.02698 * 191.52358 * 16 15 14 21 21 C 1.44576 * 113.85182 * 318.31342 * 15 14 13 22 22 C 1.40023 * 110.99817 * 169.99717 * 11 10 9 23 23 H 0.96997 * 119.99785 * 359.97438 * 1 2 3 24 24 H 1.09001 * 109.46939 * 299.99782 * 9 7 2 25 25 H 1.08996 * 109.47273 * 59.99622 * 9 7 2 26 26 H 1.09000 * 109.47691 * 299.99900 * 10 9 7 27 27 H 1.09007 * 109.47204 * 60.00014 * 10 9 7 28 28 H 1.09004 * 109.63416 * 273.49141 * 12 11 10 29 29 H 1.09002 * 109.63280 * 34.08311 * 12 11 10 30 30 H 1.08998 * 108.95443 * 331.86743 * 13 12 11 31 31 H 1.09001 * 108.88345 * 213.17853 * 13 12 11 32 32 H 1.09009 * 108.88513 * 197.77924 * 14 13 12 33 33 H 1.09007 * 108.80781 * 79.27243 * 14 13 12 34 34 H 1.08996 * 110.01743 * 70.13195 * 16 15 14 35 35 H 1.08994 * 110.48526 * 335.79147 * 17 16 15 36 36 H 1.08997 * 110.48154 * 98.43162 * 17 16 15 37 37 H 1.08999 * 110.71911 * 279.57606 * 18 17 16 38 38 H 1.08998 * 110.92264 * 156.29815 * 18 17 16 39 39 H 1.08998 * 110.48796 * 203.40824 * 19 18 17 40 40 H 1.09002 * 110.59349 * 80.81859 * 19 18 17 41 41 H 1.08994 * 110.03381 * 238.56778 * 20 16 15 42 42 H 1.09005 * 110.03552 * 0.02562 * 20 16 15 43 43 H 1.08996 * 109.57581 * 334.42672 * 21 15 14 44 44 H 1.08999 * 109.57257 * 214.03856 * 21 15 14 45 45 H 1.08996 * 108.95911 * 308.77419 * 22 11 10 46 46 H 1.09002 * 108.95371 * 67.51387 * 22 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8903 2.3964 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0017 10 6 2.2454 -3.6620 -0.0015 11 7 1.5109 -4.9342 -0.0020 12 6 0.6845 -5.0697 1.2171 13 6 -0.4777 -5.9798 0.9086 14 6 -0.1702 -7.4464 1.2496 15 7 1.2013 -7.8432 0.8570 16 6 1.3676 -9.3011 0.9259 17 6 0.9009 -9.8219 2.3009 18 6 1.9016 -10.9566 2.6362 19 6 3.2436 -10.3993 2.0999 20 6 2.8563 -9.6684 0.7978 21 6 1.6099 -7.3355 -0.4335 22 6 2.3750 -6.0124 -0.2288 23 1 -0.4850 0.8400 0.0004 24 1 0.6242 -2.5575 0.8880 25 1 0.6248 -2.5563 -0.8919 26 1 2.8728 -3.6039 -0.8909 27 1 2.8714 -3.6047 0.8891 28 1 1.2835 -5.5001 2.0197 29 1 0.3129 -4.0903 1.5184 30 1 -0.7139 -5.9049 -0.1528 31 1 -1.3428 -5.6556 1.4872 32 1 -0.8845 -8.0864 0.7315 33 1 -0.2846 -7.5889 2.3243 34 1 0.7952 -9.7799 0.1314 35 1 0.9577 -9.0303 3.0480 36 1 -0.1140 -10.2141 2.2359 37 1 1.6301 -11.8759 2.1172 38 1 1.9548 -11.1233 3.7120 39 1 3.9374 -11.2130 1.8887 40 1 3.6814 -9.7013 2.8135 41 1 3.0064 -10.3260 -0.0583 42 1 3.4555 -8.7648 0.6850 43 1 0.7297 -7.1565 -1.0509 44 1 2.2598 -8.0613 -0.9224 45 1 2.9716 -5.8071 -1.1176 46 1 3.0409 -6.1187 0.6276 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000172579781.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:44:38 Heat of formation + Delta-G solvation = -19.129893 kcal Electronic energy + Delta-G solvation = -21231.191420 eV Core-core repulsion = 18347.209963 eV Total energy + Delta-G solvation = -2883.981457 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 266.205 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.84858 -38.96218 -36.31951 -35.00048 -33.49758 -32.05626 -29.81923 -29.15819 -27.47000 -26.44533 -25.68113 -22.73864 -21.67363 -21.51090 -20.98115 -20.15095 -18.63783 -17.62049 -16.77506 -16.63389 -16.54977 -15.98012 -15.95394 -15.40682 -15.04934 -14.56447 -14.29259 -14.17225 -14.09707 -13.47981 -13.30584 -13.18431 -12.86053 -12.62062 -12.49101 -12.38125 -12.20310 -11.93004 -11.88774 -11.77295 -11.76432 -11.64570 -11.54502 -11.48399 -11.34089 -11.17327 -11.12077 -10.51539 -9.06598 -9.00601 -8.19151 -6.30049 1.40384 1.40745 1.54215 2.41038 2.89863 3.13977 3.16685 3.67464 3.78258 3.96515 4.03572 4.12269 4.19763 4.30393 4.45472 4.50727 4.52531 4.54555 4.60786 4.63436 4.65490 4.69979 4.79160 4.83751 4.87860 4.93732 5.00424 5.05727 5.07776 5.10030 5.11418 5.24465 5.26294 5.30751 5.36631 5.38876 5.48568 5.52623 5.72728 5.81383 6.13770 6.25519 6.36515 6.42887 6.71582 6.87050 7.38765 8.93076 Molecular weight = 266.21amu Principal moments of inertia in cm(-1) A = 0.040592 B = 0.003593 C = 0.003468 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 689.626303 B = 7790.974490 C = 8072.143425 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.001 3.999 3 Si 0.966 3.034 4 H -0.263 1.263 5 H -0.278 1.278 6 H -0.277 1.277 7 C -0.544 4.544 8 H 0.058 0.942 9 C 0.037 3.963 10 C 0.085 3.915 11 N -0.561 5.561 12 C 0.073 3.927 13 C -0.113 4.113 14 C 0.073 3.927 15 N -0.555 5.555 16 C 0.084 3.916 17 C -0.118 4.118 18 C -0.119 4.119 19 C -0.119 4.119 20 C -0.119 4.119 21 C 0.074 3.926 22 C 0.081 3.919 23 H 0.263 0.737 24 H -0.002 1.002 25 H -0.009 1.009 26 H 0.061 0.939 27 H 0.014 0.986 28 H 0.040 0.960 29 H 0.053 0.947 30 H 0.057 0.943 31 H 0.077 0.923 32 H 0.039 0.961 33 H 0.078 0.922 34 H 0.041 0.959 35 H 0.065 0.935 36 H 0.069 0.931 37 H 0.074 0.926 38 H 0.072 0.928 39 H 0.074 0.926 40 H 0.056 0.944 41 H 0.071 0.929 42 H 0.061 0.939 43 H 0.039 0.961 44 H 0.087 0.913 45 H 0.067 0.933 46 H 0.014 0.986 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.933 -23.014 3.444 23.454 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.197 4.197 3 Si 0.791 3.209 4 H -0.187 1.187 5 H -0.203 1.203 6 H -0.203 1.203 7 C -0.582 4.582 8 H 0.076 0.924 9 C 0.000 4.000 10 C -0.042 4.042 11 N -0.285 5.285 12 C -0.054 4.054 13 C -0.152 4.152 14 C -0.054 4.054 15 N -0.281 5.281 16 C -0.023 4.023 17 C -0.156 4.156 18 C -0.156 4.156 19 C -0.157 4.157 20 C -0.156 4.156 21 C -0.055 4.055 22 C -0.049 4.049 23 H 0.072 0.928 24 H 0.016 0.984 25 H 0.010 0.990 26 H 0.079 0.921 27 H 0.032 0.968 28 H 0.058 0.942 29 H 0.071 0.929 30 H 0.076 0.924 31 H 0.095 0.905 32 H 0.057 0.943 33 H 0.097 0.903 34 H 0.059 0.941 35 H 0.084 0.916 36 H 0.087 0.913 37 H 0.093 0.907 38 H 0.090 0.910 39 H 0.093 0.907 40 H 0.075 0.925 41 H 0.090 0.910 42 H 0.080 0.920 43 H 0.058 0.942 44 H 0.106 0.894 45 H 0.086 0.914 46 H 0.032 0.968 Dipole moment (debyes) X Y Z Total from point charges 2.785 -22.725 3.383 23.143 hybrid contribution 0.120 0.994 -0.052 1.003 sum 2.905 -21.731 3.331 22.175 Atomic orbital electron populations 1.70116 1.07758 1.27659 1.51538 1.25954 0.95769 1.03264 0.94668 0.85384 0.79030 0.78717 0.77808 1.18656 1.20315 1.20306 1.21661 0.93468 0.92384 1.50736 0.92378 1.18958 0.94150 0.91825 0.95065 1.21902 0.95229 0.88495 0.98585 1.59267 1.27882 1.02556 1.38806 1.21682 0.94816 0.98749 0.90142 1.21400 0.97645 0.94197 1.01922 1.22312 0.87822 0.94349 1.00930 1.60885 1.25349 1.11695 1.30162 1.22369 0.96691 0.85808 0.97461 1.22479 0.99134 0.98136 0.95806 1.22460 0.94346 0.97631 1.01196 1.22289 0.97602 0.99395 0.96383 1.22245 0.94658 1.00161 0.98585 1.21814 0.98912 0.95108 0.89696 1.20977 0.93770 0.90734 0.99455 0.92779 0.98379 0.99046 0.92089 0.96792 0.94164 0.92872 0.92415 0.90469 0.94275 0.90345 0.94115 0.91608 0.91264 0.90702 0.90962 0.90737 0.92498 0.90991 0.92007 0.94220 0.89446 0.91431 0.96751 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.57 13.29 21.45 0.28 -57.29 16 2 C 0.00 0.08 5.46 84.65 0.46 0.54 16 3 Si 0.97 45.02 29.54 68.60 2.03 47.04 16 4 H -0.26 -11.68 7.11 99.48 0.71 -10.98 16 5 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 6 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 7 C -0.54 -31.84 9.11 25.60 0.23 -31.61 16 8 H 0.06 3.27 7.74 -2.91 -0.02 3.25 16 9 C 0.04 2.05 4.89 29.85 0.15 2.20 16 10 C 0.08 3.80 4.90 86.30 0.42 4.22 16 11 N -0.56 -21.45 4.10 -912.44 -3.74 -25.18 16 12 C 0.07 2.65 5.16 85.40 0.44 3.10 16 13 C -0.11 -3.37 5.36 30.11 0.16 -3.21 16 14 C 0.07 1.74 4.76 86.31 0.41 2.15 16 15 N -0.56 -13.34 3.74 -865.73 -3.23 -16.58 16 16 C 0.08 1.61 2.57 45.64 0.12 1.73 16 17 C -0.12 -1.96 5.34 31.69 0.17 -1.79 16 18 C -0.12 -1.62 6.91 31.91 0.22 -1.40 16 19 C -0.12 -1.80 6.83 31.67 0.22 -1.59 16 20 C -0.12 -2.06 5.52 31.32 0.17 -1.89 16 21 C 0.07 1.89 4.86 87.14 0.42 2.32 16 22 C 0.08 2.55 5.04 87.95 0.44 2.99 16 23 H 0.26 15.22 8.31 -92.71 -0.77 14.45 16 24 H 0.00 -0.12 6.06 -2.39 -0.01 -0.13 16 25 H -0.01 -0.54 8.14 -2.39 -0.02 -0.56 16 26 H 0.06 2.66 7.85 -2.39 -0.02 2.64 16 27 H 0.01 0.63 8.14 -2.38 -0.02 0.61 16 28 H 0.04 1.44 7.57 -2.39 -0.02 1.42 16 29 H 0.05 2.26 5.61 -2.39 -0.01 2.25 16 30 H 0.06 1.88 7.23 -2.39 -0.02 1.86 16 31 H 0.08 2.12 8.14 -2.39 -0.02 2.10 16 32 H 0.04 0.86 8.03 -2.38 -0.02 0.84 16 33 H 0.08 1.74 6.88 -2.38 -0.02 1.72 16 34 H 0.04 0.77 8.14 -2.39 -0.02 0.75 16 35 H 0.07 1.28 7.15 -2.39 -0.02 1.26 16 36 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 37 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 38 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 39 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 40 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 41 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 42 H 0.06 1.28 7.19 -2.38 -0.02 1.26 16 43 H 0.04 1.12 6.93 -2.39 -0.02 1.10 16 44 H 0.09 1.90 6.51 -2.39 -0.02 1.88 16 45 H 0.07 2.05 7.82 -2.39 -0.02 2.04 16 46 H 0.01 0.48 8.06 -2.39 -0.02 0.46 16 Total: -1.00 -64.34 339.05 0.29 -64.04 By element: Atomic # 1 Polarization: 9.29 SS G_CDS: 0.91 Total: 10.20 kcal Atomic # 6 Polarization: -26.29 SS G_CDS: 4.04 Total: -22.25 kcal Atomic # 7 Polarization: -92.36 SS G_CDS: -6.69 Total: -99.05 kcal Atomic # 14 Polarization: 45.02 SS G_CDS: 2.03 Total: 47.04 kcal Total: -64.34 0.29 -64.04 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000172579781.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.915 kcal (2) G-P(sol) polarization free energy of solvation -64.336 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.421 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.291 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.045 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.130 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds