Wall clock time and date at job start Mon Mar 30 2020 01:26:14
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52998 * 1
3 3 H 1.09000 * 109.47502 * 2 1
4 4 C 1.53001 * 109.47492 * 239.99370 * 2 1 3
5 5 C 1.52994 * 109.47430 * 300.00609 * 4 2 1
6 6 C 1.53008 * 109.46645 * 299.99585 * 5 4 2
7 7 C 1.52989 * 109.47147 * 60.00076 * 6 5 4
8 8 C 1.52998 * 109.47300 * 119.99779 * 2 1 3
9 9 H 1.09001 * 109.47720 * 180.02562 * 8 2 1
10 10 C 1.53001 * 109.47028 * 300.00324 * 8 2 1
11 11 N 1.46902 * 109.47382 * 185.85668 * 10 8 2
12 12 C 1.46894 * 111.00470 * 200.37571 * 11 10 8
13 13 C 1.53232 * 109.34428 * 172.74572 * 12 11 10
14 14 N 1.47081 * 108.51805 * 53.83498 * 13 12 11
15 15 C 1.36936 * 120.88452 * 128.83801 * 14 13 12
16 16 H 1.07998 * 119.99797 * 330.00044 * 15 14 13
17 17 C 1.38820 * 120.00053 * 149.99317 * 15 14 13
18 18 N 1.31619 * 119.99675 * 164.05249 * 17 15 14
19 19 Si 1.86797 * 120.00012 * 344.05753 * 17 15 14
20 20 H 1.48494 * 109.47241 * 89.93521 * 19 17 15
21 21 H 1.48499 * 109.46792 * 209.93562 * 19 17 15
22 22 H 1.48501 * 109.47065 * 329.93033 * 19 17 15
23 23 C 1.47081 * 118.23601 * 308.81333 * 14 13 12
24 24 C 1.46903 * 110.99759 * 76.07385 * 11 10 8
25 25 H 1.09007 * 109.46687 * 180.02562 * 1 2 3
26 26 H 1.08992 * 109.47081 * 300.00013 * 1 2 3
27 27 H 1.08998 * 109.47095 * 60.00527 * 1 2 3
28 28 H 1.09011 * 109.46637 * 60.00152 * 4 2 1
29 29 H 1.08996 * 109.47423 * 179.97438 * 4 2 1
30 30 H 1.08996 * 109.47352 * 59.99302 * 5 4 2
31 31 H 1.08999 * 109.47391 * 180.02562 * 5 4 2
32 32 H 1.09005 * 109.46810 * 299.99747 * 6 5 4
33 33 H 1.08998 * 109.46587 * 180.02562 * 6 5 4
34 34 H 1.08998 * 109.47145 * 180.02562 * 7 6 5
35 35 H 1.09005 * 109.47534 * 60.00115 * 7 6 5
36 36 H 1.09003 * 109.47360 * 305.85667 * 10 8 2
37 37 H 1.08997 * 109.47383 * 65.85685 * 10 8 2
38 38 H 1.09002 * 109.49555 * 292.71423 * 12 11 10
39 39 H 1.09004 * 109.48952 * 52.78348 * 12 11 10
40 40 H 1.09002 * 109.62844 * 294.12672 * 13 12 11
41 41 H 1.09006 * 109.79139 * 173.63235 * 13 12 11
42 42 H 0.96998 * 119.99889 * 180.02562 * 18 17 15
43 43 H 1.09006 * 109.62869 * 291.47699 * 23 14 13
44 44 H 1.09000 * 109.78776 * 170.99325 * 23 14 13
45 45 H 1.09000 * 109.49630 * 307.21866 * 24 11 10
46 46 H 1.09005 * 109.49113 * 67.27085 * 24 11 10
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8934 1.0276 0.0000
4 6 2.0401 -0.7214 -1.2491
5 6 1.5301 -2.1638 -1.2492
6 6 2.0401 -2.8850 0.0002
7 6 1.5300 -2.1637 1.2493
8 6 2.0400 -0.7212 1.2492
9 1 3.1300 -0.7208 1.2495
10 6 1.5300 0.0001 2.4985
11 7 2.1316 -0.6059 3.6938
12 6 1.3417 -0.2995 4.8938
13 6 1.8950 -1.0932 6.0820
14 7 3.3350 -0.8172 6.1982
15 6 3.8821 -0.4289 7.3920
16 1 3.2905 0.1324 8.1000
17 6 5.1973 -0.7567 7.6921
18 7 5.8235 -0.1364 8.6695
19 14 6.0781 -2.0782 6.7087
20 1 6.7585 -1.4575 5.5438
21 1 7.0847 -2.7483 7.5706
22 1 5.0914 -3.0794 6.2300
23 6 4.1719 -0.9699 4.9984
24 6 3.5289 -0.1811 3.8528
25 1 -0.3633 -1.0278 0.0005
26 1 -0.3633 0.5138 0.8899
27 1 -0.3633 0.5137 -0.8900
28 1 1.6767 -0.2075 -2.1392
29 1 3.1300 -0.7210 -1.2494
30 1 0.4401 -2.1638 -1.2492
31 1 1.8938 -2.6778 -2.1388
32 1 3.1301 -2.8850 0.0002
33 1 1.6771 -3.9128 0.0000
34 1 1.8937 -2.6772 2.1393
35 1 0.4400 -2.1637 1.2493
36 1 1.8051 1.0536 2.4476
37 1 0.4451 -0.0899 2.5525
38 1 1.4045 0.7674 5.1081
39 1 0.3010 -0.5761 4.7245
40 1 1.7388 -2.1590 5.9150
41 1 1.3886 -0.7879 6.9977
42 1 6.7425 -0.3652 8.8790
43 1 4.2345 -2.0238 4.7273
44 1 5.1716 -0.5822 5.1940
45 1 4.0745 -0.3717 2.9287
46 1 3.5613 0.8843 4.0812
RHF calculation, no. of doubly occupied orbitals= 52
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000183036716.mol2 46
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 01:26:14
Heat of formation + Delta-G solvation = 8.058204 kcal
Electronic energy + Delta-G solvation = -21788.435082 eV
Core-core repulsion = 18905.632589 eV
Total energy + Delta-G solvation = -2882.802493 eV
No. of doubly occupied orbitals = 52
Molecular weight
(most abundant/longest-lived isotopes) = 266.205 amu
Computer time = 0.55 seconds
Orbital eigenvalues (eV)
-39.69735 -37.91371 -34.63494 -32.28404 -31.73304 -30.73680 -30.36958 -27.56899
-26.47655 -24.33928 -23.16594 -22.54006 -22.05757 -20.77751 -19.35866 -18.37828
-16.79059 -15.89007 -15.69800 -14.87643 -14.65315 -14.38387 -14.07254 -13.98851
-13.95813 -13.75733 -13.13566 -12.82658 -12.67366 -12.41912 -12.29202 -11.92710
-11.75130 -11.69604 -11.52480 -11.31267 -11.10099 -10.92717 -10.75816 -10.53376
-10.32304 -10.16821 -10.03099 -9.93342 -9.85433 -9.68519 -9.44176 -8.62281
-7.88909 -6.86562 -5.91168 -3.30906 3.34480 3.50804 3.55522 4.22776
4.56141 4.60498 4.67101 4.78660 5.03832 5.07936 5.17575 5.28053
5.29987 5.37102 5.41532 5.49958 5.57851 5.61923 5.64751 5.71519
5.75798 5.79039 5.88198 5.92846 5.97705 6.01075 6.06313 6.07702
6.11468 6.12657 6.18715 6.24495 6.27534 6.37655 6.44650 6.54525
6.60562 6.64574 6.70517 6.93255 7.54003 7.56380 8.01751 8.37102
8.97320 9.75021 10.16297 11.25217
Molecular weight = 266.21amu
Principal moments of inertia in cm(-1)
A = 0.030592 B = 0.004908 C = 0.004571
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 915.066885 B = 5704.007062 C = 6123.914011
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.151 4.151
2 C -0.087 4.087
3 H 0.064 0.936
4 C -0.112 4.112
5 C -0.120 4.120
6 C -0.120 4.120
7 C -0.106 4.106
8 C -0.075 4.075
9 H 0.069 0.931
10 C 0.058 3.942
11 N -0.532 5.532
12 C 0.043 3.957
13 C 0.152 3.848
14 N -0.609 5.609
15 C -0.259 4.259
16 H 0.084 0.916
17 C 0.022 3.978
18 N -0.915 5.915
19 Si 0.890 3.110
20 H -0.289 1.289
21 H -0.304 1.304
22 H -0.269 1.269
23 C 0.129 3.871
24 C 0.044 3.956
25 H 0.062 0.938
26 H 0.054 0.946
27 H 0.048 0.952
28 H 0.057 0.943
29 H 0.059 0.941
30 H 0.062 0.938
31 H 0.054 0.946
32 H 0.058 0.942
33 H 0.056 0.944
34 H 0.075 0.925
35 H 0.057 0.943
36 H 0.028 0.972
37 H 0.069 0.931
38 H 0.030 0.970
39 H 0.064 0.936
40 H 0.029 0.971
41 H 0.064 0.936
42 H 0.262 0.738
43 H 0.032 0.968
44 H 0.072 0.928
45 H 0.064 0.936
46 H 0.032 0.968
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -10.181 -1.771 -19.600 22.157
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.208 4.208
2 C -0.106 4.106
3 H 0.083 0.917
4 C -0.150 4.150
5 C -0.157 4.157
6 C -0.158 4.158
7 C -0.143 4.143
8 C -0.094 4.094
9 H 0.087 0.913
10 C -0.070 4.070
11 N -0.256 5.256
12 C -0.086 4.086
13 C 0.026 3.974
14 N -0.334 5.334
15 C -0.387 4.387
16 H 0.102 0.898
17 C -0.176 4.176
18 N -0.558 5.558
19 Si 0.721 3.279
20 H -0.216 1.216
21 H -0.233 1.233
22 H -0.194 1.194
23 C 0.003 3.997
24 C -0.085 4.085
25 H 0.080 0.920
26 H 0.073 0.927
27 H 0.067 0.933
28 H 0.076 0.924
29 H 0.078 0.922
30 H 0.081 0.919
31 H 0.073 0.927
32 H 0.077 0.923
33 H 0.075 0.925
34 H 0.094 0.906
35 H 0.076 0.924
36 H 0.046 0.954
37 H 0.087 0.913
38 H 0.048 0.952
39 H 0.083 0.917
40 H 0.047 0.953
41 H 0.082 0.918
42 H 0.072 0.928
43 H 0.050 0.950
44 H 0.090 0.910
45 H 0.082 0.918
46 H 0.051 0.949
Dipole moment (debyes) X Y Z Total
from point charges -10.040 -2.260 -19.514 22.062
hybrid contribution 0.684 0.275 -0.411 0.844
sum -9.357 -1.986 -19.925 22.102
Atomic orbital electron populations
1.21969 0.95535 1.02079 1.01179 1.21106 0.95865 0.98890 0.94726
0.91706 1.21535 1.00480 0.95731 0.97243 1.21568 1.00787 0.95605
0.97780 1.21557 1.00709 0.98627 0.94911 1.21480 1.00134 0.94952
0.97739 1.21121 1.00300 0.95276 0.92669 0.91293 1.22201 0.98865
0.95481 0.90424 1.61877 1.02464 1.58948 1.02354 1.22617 0.96119
0.98552 0.91316 1.21004 0.85163 0.96384 0.94824 1.44377 1.03107
1.79831 1.06046 1.18936 0.96969 1.28666 0.94126 0.89846 1.25342
0.97259 0.98486 0.96539 1.69793 1.11679 1.42224 1.32098 0.86869
0.78984 0.83684 0.78372 1.21631 1.23286 1.19374 1.21450 0.94828
0.97211 0.86212 1.22643 0.88863 0.97964 0.99079 0.91958 0.92668
0.93323 0.92442 0.92178 0.91913 0.92698 0.92295 0.92477 0.90584
0.92403 0.95367 0.91281 0.95180 0.91749 0.95283 0.91802 0.92795
0.94984 0.91001 0.91773 0.94929
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -1.36 8.15 37.16 0.30 -1.06 16
2 C -0.09 -0.86 2.72 -90.62 -0.25 -1.11 16
3 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16
4 C -0.11 -1.02 5.45 -26.73 -0.15 -1.17 16
5 C -0.12 -1.07 5.65 -26.73 -0.15 -1.22 16
6 C -0.12 -1.23 5.92 -26.73 -0.16 -1.39 16
7 C -0.11 -1.23 4.82 -26.73 -0.13 -1.36 16
8 C -0.07 -0.88 2.03 -90.62 -0.18 -1.07 16
9 H 0.07 0.91 6.68 -51.93 -0.35 0.56 16
10 C 0.06 0.78 3.86 -3.82 -0.01 0.77 16
11 N -0.53 -8.82 4.05 -234.32 -0.95 -9.76 16
12 C 0.04 0.74 5.59 -3.71 -0.02 0.72 16
13 C 0.15 3.11 6.69 -3.60 -0.02 3.08 16
14 N -0.61 -14.94 2.79 -172.01 -0.48 -15.42 16
15 C -0.26 -7.40 10.08 -15.06 -0.15 -7.55 16
16 H 0.08 2.54 8.06 -52.49 -0.42 2.12 16
17 C 0.02 0.66 5.30 -17.43 -0.09 0.57 16
18 N -0.91 -28.52 13.97 55.49 0.78 -27.74 16
19 Si 0.89 22.99 24.26 -169.99 -4.12 18.87 16
20 H -0.29 -7.16 6.56 56.52 0.37 -6.79 16
21 H -0.30 -7.97 7.11 56.52 0.40 -7.57 16
22 H -0.27 -6.87 6.49 56.52 0.37 -6.51 16
23 C 0.13 2.91 4.32 -3.60 -0.02 2.89 16
24 C 0.04 0.82 5.44 -3.70 -0.02 0.80 16
25 H 0.06 0.56 4.81 -51.93 -0.25 0.31 16
26 H 0.05 0.51 6.56 -51.93 -0.34 0.17 16
27 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16
28 H 0.06 0.47 8.14 -51.92 -0.42 0.05 16
29 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16
30 H 0.06 0.54 6.43 -51.93 -0.33 0.21 16
31 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16
32 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16
33 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16
34 H 0.08 1.06 7.78 -51.93 -0.40 0.65 16
35 H 0.06 0.64 6.43 -51.93 -0.33 0.31 16
36 H 0.03 0.39 7.99 -51.93 -0.42 -0.02 16
37 H 0.07 0.86 6.38 -51.93 -0.33 0.53 16
38 H 0.03 0.55 8.14 -51.93 -0.42 0.12 16
39 H 0.06 0.94 7.90 -51.93 -0.41 0.53 16
40 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16
41 H 0.06 1.28 7.95 -51.93 -0.41 0.86 16
42 H 0.26 7.76 8.31 -40.82 -0.34 7.42 16
43 H 0.03 0.74 6.78 -51.93 -0.35 0.39 16
44 H 0.07 1.75 4.71 -51.93 -0.24 1.51 16
45 H 0.06 1.07 6.63 -51.93 -0.34 0.72 16
46 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16
LS Contribution 326.08 15.07 4.91 4.91
Total: -1.00 -30.26 326.08 -9.28 -39.55
By element:
Atomic # 1 Polarization: 5.06 SS G_CDS: -8.37 Total: -3.31 kcal
Atomic # 6 Polarization: -6.04 SS G_CDS: -1.05 Total: -7.09 kcal
Atomic # 7 Polarization: -52.27 SS G_CDS: -0.65 Total: -52.93 kcal
Atomic # 14 Polarization: 22.99 SS G_CDS: -4.12 Total: 18.87 kcal
Total LS contribution 4.91 Total: 4.91 kcal
Total: -30.26 -9.28 -39.55 kcal
The number of atoms in the molecule is 46
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000183036716.mol2 46
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 47.603 kcal
(2) G-P(sol) polarization free energy of solvation -30.261 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.342 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.284 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.545 kcal
(6) G-S(sol) free energy of system = (1) + (5) 8.058 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.56 seconds