Wall clock time and date at job start Mon Mar 30 2020 01:26:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.47502 * 2 1 4 4 C 1.53001 * 109.47492 * 239.99370 * 2 1 3 5 5 C 1.52994 * 109.47430 * 300.00609 * 4 2 1 6 6 C 1.53008 * 109.46645 * 299.99585 * 5 4 2 7 7 C 1.52989 * 109.47147 * 60.00076 * 6 5 4 8 8 C 1.52998 * 109.47300 * 119.99779 * 2 1 3 9 9 H 1.09001 * 109.47720 * 180.02562 * 8 2 1 10 10 C 1.53001 * 109.47028 * 300.00324 * 8 2 1 11 11 N 1.46902 * 109.47382 * 185.85668 * 10 8 2 12 12 C 1.46894 * 111.00470 * 200.37571 * 11 10 8 13 13 C 1.53232 * 109.34428 * 172.74572 * 12 11 10 14 14 N 1.47081 * 108.51805 * 53.83498 * 13 12 11 15 15 C 1.36936 * 120.88452 * 128.83801 * 14 13 12 16 16 H 1.07998 * 119.99797 * 330.00044 * 15 14 13 17 17 C 1.38820 * 120.00053 * 149.99317 * 15 14 13 18 18 N 1.31619 * 119.99675 * 164.05249 * 17 15 14 19 19 Si 1.86797 * 120.00012 * 344.05753 * 17 15 14 20 20 H 1.48494 * 109.47241 * 89.93521 * 19 17 15 21 21 H 1.48499 * 109.46792 * 209.93562 * 19 17 15 22 22 H 1.48501 * 109.47065 * 329.93033 * 19 17 15 23 23 C 1.47081 * 118.23601 * 308.81333 * 14 13 12 24 24 C 1.46903 * 110.99759 * 76.07385 * 11 10 8 25 25 H 1.09007 * 109.46687 * 180.02562 * 1 2 3 26 26 H 1.08992 * 109.47081 * 300.00013 * 1 2 3 27 27 H 1.08998 * 109.47095 * 60.00527 * 1 2 3 28 28 H 1.09011 * 109.46637 * 60.00152 * 4 2 1 29 29 H 1.08996 * 109.47423 * 179.97438 * 4 2 1 30 30 H 1.08996 * 109.47352 * 59.99302 * 5 4 2 31 31 H 1.08999 * 109.47391 * 180.02562 * 5 4 2 32 32 H 1.09005 * 109.46810 * 299.99747 * 6 5 4 33 33 H 1.08998 * 109.46587 * 180.02562 * 6 5 4 34 34 H 1.08998 * 109.47145 * 180.02562 * 7 6 5 35 35 H 1.09005 * 109.47534 * 60.00115 * 7 6 5 36 36 H 1.09003 * 109.47360 * 305.85667 * 10 8 2 37 37 H 1.08997 * 109.47383 * 65.85685 * 10 8 2 38 38 H 1.09002 * 109.49555 * 292.71423 * 12 11 10 39 39 H 1.09004 * 109.48952 * 52.78348 * 12 11 10 40 40 H 1.09002 * 109.62844 * 294.12672 * 13 12 11 41 41 H 1.09006 * 109.79139 * 173.63235 * 13 12 11 42 42 H 0.96998 * 119.99889 * 180.02562 * 18 17 15 43 43 H 1.09006 * 109.62869 * 291.47699 * 23 14 13 44 44 H 1.09000 * 109.78776 * 170.99325 * 23 14 13 45 45 H 1.09000 * 109.49630 * 307.21866 * 24 11 10 46 46 H 1.09005 * 109.49113 * 67.27085 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7214 -1.2491 5 6 1.5301 -2.1638 -1.2492 6 6 2.0401 -2.8850 0.0002 7 6 1.5300 -2.1637 1.2493 8 6 2.0400 -0.7212 1.2492 9 1 3.1300 -0.7208 1.2495 10 6 1.5300 0.0001 2.4985 11 7 2.1316 -0.6059 3.6938 12 6 1.3417 -0.2995 4.8938 13 6 1.8950 -1.0932 6.0820 14 7 3.3350 -0.8172 6.1982 15 6 3.8821 -0.4289 7.3920 16 1 3.2905 0.1324 8.1000 17 6 5.1973 -0.7567 7.6921 18 7 5.8235 -0.1364 8.6695 19 14 6.0781 -2.0782 6.7087 20 1 6.7585 -1.4575 5.5438 21 1 7.0847 -2.7483 7.5706 22 1 5.0914 -3.0794 6.2300 23 6 4.1719 -0.9699 4.9984 24 6 3.5289 -0.1811 3.8528 25 1 -0.3633 -1.0278 0.0005 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5137 -0.8900 28 1 1.6767 -0.2075 -2.1392 29 1 3.1300 -0.7210 -1.2494 30 1 0.4401 -2.1638 -1.2492 31 1 1.8938 -2.6778 -2.1388 32 1 3.1301 -2.8850 0.0002 33 1 1.6771 -3.9128 0.0000 34 1 1.8937 -2.6772 2.1393 35 1 0.4400 -2.1637 1.2493 36 1 1.8051 1.0536 2.4476 37 1 0.4451 -0.0899 2.5525 38 1 1.4045 0.7674 5.1081 39 1 0.3010 -0.5761 4.7245 40 1 1.7388 -2.1590 5.9150 41 1 1.3886 -0.7879 6.9977 42 1 6.7425 -0.3652 8.8790 43 1 4.2345 -2.0238 4.7273 44 1 5.1716 -0.5822 5.1940 45 1 4.0745 -0.3717 2.9287 46 1 3.5613 0.8843 4.0812 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000183036716.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:26:14 Heat of formation + Delta-G solvation = 8.058204 kcal Electronic energy + Delta-G solvation = -21788.435082 eV Core-core repulsion = 18905.632589 eV Total energy + Delta-G solvation = -2882.802493 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 266.205 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -39.69735 -37.91371 -34.63494 -32.28404 -31.73304 -30.73680 -30.36958 -27.56899 -26.47655 -24.33928 -23.16594 -22.54006 -22.05757 -20.77751 -19.35866 -18.37828 -16.79059 -15.89007 -15.69800 -14.87643 -14.65315 -14.38387 -14.07254 -13.98851 -13.95813 -13.75733 -13.13566 -12.82658 -12.67366 -12.41912 -12.29202 -11.92710 -11.75130 -11.69604 -11.52480 -11.31267 -11.10099 -10.92717 -10.75816 -10.53376 -10.32304 -10.16821 -10.03099 -9.93342 -9.85433 -9.68519 -9.44176 -8.62281 -7.88909 -6.86562 -5.91168 -3.30906 3.34480 3.50804 3.55522 4.22776 4.56141 4.60498 4.67101 4.78660 5.03832 5.07936 5.17575 5.28053 5.29987 5.37102 5.41532 5.49958 5.57851 5.61923 5.64751 5.71519 5.75798 5.79039 5.88198 5.92846 5.97705 6.01075 6.06313 6.07702 6.11468 6.12657 6.18715 6.24495 6.27534 6.37655 6.44650 6.54525 6.60562 6.64574 6.70517 6.93255 7.54003 7.56380 8.01751 8.37102 8.97320 9.75021 10.16297 11.25217 Molecular weight = 266.21amu Principal moments of inertia in cm(-1) A = 0.030592 B = 0.004908 C = 0.004571 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 915.066885 B = 5704.007062 C = 6123.914011 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.087 4.087 3 H 0.064 0.936 4 C -0.112 4.112 5 C -0.120 4.120 6 C -0.120 4.120 7 C -0.106 4.106 8 C -0.075 4.075 9 H 0.069 0.931 10 C 0.058 3.942 11 N -0.532 5.532 12 C 0.043 3.957 13 C 0.152 3.848 14 N -0.609 5.609 15 C -0.259 4.259 16 H 0.084 0.916 17 C 0.022 3.978 18 N -0.915 5.915 19 Si 0.890 3.110 20 H -0.289 1.289 21 H -0.304 1.304 22 H -0.269 1.269 23 C 0.129 3.871 24 C 0.044 3.956 25 H 0.062 0.938 26 H 0.054 0.946 27 H 0.048 0.952 28 H 0.057 0.943 29 H 0.059 0.941 30 H 0.062 0.938 31 H 0.054 0.946 32 H 0.058 0.942 33 H 0.056 0.944 34 H 0.075 0.925 35 H 0.057 0.943 36 H 0.028 0.972 37 H 0.069 0.931 38 H 0.030 0.970 39 H 0.064 0.936 40 H 0.029 0.971 41 H 0.064 0.936 42 H 0.262 0.738 43 H 0.032 0.968 44 H 0.072 0.928 45 H 0.064 0.936 46 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.181 -1.771 -19.600 22.157 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.106 4.106 3 H 0.083 0.917 4 C -0.150 4.150 5 C -0.157 4.157 6 C -0.158 4.158 7 C -0.143 4.143 8 C -0.094 4.094 9 H 0.087 0.913 10 C -0.070 4.070 11 N -0.256 5.256 12 C -0.086 4.086 13 C 0.026 3.974 14 N -0.334 5.334 15 C -0.387 4.387 16 H 0.102 0.898 17 C -0.176 4.176 18 N -0.558 5.558 19 Si 0.721 3.279 20 H -0.216 1.216 21 H -0.233 1.233 22 H -0.194 1.194 23 C 0.003 3.997 24 C -0.085 4.085 25 H 0.080 0.920 26 H 0.073 0.927 27 H 0.067 0.933 28 H 0.076 0.924 29 H 0.078 0.922 30 H 0.081 0.919 31 H 0.073 0.927 32 H 0.077 0.923 33 H 0.075 0.925 34 H 0.094 0.906 35 H 0.076 0.924 36 H 0.046 0.954 37 H 0.087 0.913 38 H 0.048 0.952 39 H 0.083 0.917 40 H 0.047 0.953 41 H 0.082 0.918 42 H 0.072 0.928 43 H 0.050 0.950 44 H 0.090 0.910 45 H 0.082 0.918 46 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges -10.040 -2.260 -19.514 22.062 hybrid contribution 0.684 0.275 -0.411 0.844 sum -9.357 -1.986 -19.925 22.102 Atomic orbital electron populations 1.21969 0.95535 1.02079 1.01179 1.21106 0.95865 0.98890 0.94726 0.91706 1.21535 1.00480 0.95731 0.97243 1.21568 1.00787 0.95605 0.97780 1.21557 1.00709 0.98627 0.94911 1.21480 1.00134 0.94952 0.97739 1.21121 1.00300 0.95276 0.92669 0.91293 1.22201 0.98865 0.95481 0.90424 1.61877 1.02464 1.58948 1.02354 1.22617 0.96119 0.98552 0.91316 1.21004 0.85163 0.96384 0.94824 1.44377 1.03107 1.79831 1.06046 1.18936 0.96969 1.28666 0.94126 0.89846 1.25342 0.97259 0.98486 0.96539 1.69793 1.11679 1.42224 1.32098 0.86869 0.78984 0.83684 0.78372 1.21631 1.23286 1.19374 1.21450 0.94828 0.97211 0.86212 1.22643 0.88863 0.97964 0.99079 0.91958 0.92668 0.93323 0.92442 0.92178 0.91913 0.92698 0.92295 0.92477 0.90584 0.92403 0.95367 0.91281 0.95180 0.91749 0.95283 0.91802 0.92795 0.94984 0.91001 0.91773 0.94929 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.36 8.15 37.16 0.30 -1.06 16 2 C -0.09 -0.86 2.72 -90.62 -0.25 -1.11 16 3 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 4 C -0.11 -1.02 5.45 -26.73 -0.15 -1.17 16 5 C -0.12 -1.07 5.65 -26.73 -0.15 -1.22 16 6 C -0.12 -1.23 5.92 -26.73 -0.16 -1.39 16 7 C -0.11 -1.23 4.82 -26.73 -0.13 -1.36 16 8 C -0.07 -0.88 2.03 -90.62 -0.18 -1.07 16 9 H 0.07 0.91 6.68 -51.93 -0.35 0.56 16 10 C 0.06 0.78 3.86 -3.82 -0.01 0.77 16 11 N -0.53 -8.82 4.05 -234.32 -0.95 -9.76 16 12 C 0.04 0.74 5.59 -3.71 -0.02 0.72 16 13 C 0.15 3.11 6.69 -3.60 -0.02 3.08 16 14 N -0.61 -14.94 2.79 -172.01 -0.48 -15.42 16 15 C -0.26 -7.40 10.08 -15.06 -0.15 -7.55 16 16 H 0.08 2.54 8.06 -52.49 -0.42 2.12 16 17 C 0.02 0.66 5.30 -17.43 -0.09 0.57 16 18 N -0.91 -28.52 13.97 55.49 0.78 -27.74 16 19 Si 0.89 22.99 24.26 -169.99 -4.12 18.87 16 20 H -0.29 -7.16 6.56 56.52 0.37 -6.79 16 21 H -0.30 -7.97 7.11 56.52 0.40 -7.57 16 22 H -0.27 -6.87 6.49 56.52 0.37 -6.51 16 23 C 0.13 2.91 4.32 -3.60 -0.02 2.89 16 24 C 0.04 0.82 5.44 -3.70 -0.02 0.80 16 25 H 0.06 0.56 4.81 -51.93 -0.25 0.31 16 26 H 0.05 0.51 6.56 -51.93 -0.34 0.17 16 27 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 28 H 0.06 0.47 8.14 -51.92 -0.42 0.05 16 29 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 30 H 0.06 0.54 6.43 -51.93 -0.33 0.21 16 31 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.08 1.06 7.78 -51.93 -0.40 0.65 16 35 H 0.06 0.64 6.43 -51.93 -0.33 0.31 16 36 H 0.03 0.39 7.99 -51.93 -0.42 -0.02 16 37 H 0.07 0.86 6.38 -51.93 -0.33 0.53 16 38 H 0.03 0.55 8.14 -51.93 -0.42 0.12 16 39 H 0.06 0.94 7.90 -51.93 -0.41 0.53 16 40 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 41 H 0.06 1.28 7.95 -51.93 -0.41 0.86 16 42 H 0.26 7.76 8.31 -40.82 -0.34 7.42 16 43 H 0.03 0.74 6.78 -51.93 -0.35 0.39 16 44 H 0.07 1.75 4.71 -51.93 -0.24 1.51 16 45 H 0.06 1.07 6.63 -51.93 -0.34 0.72 16 46 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 LS Contribution 326.08 15.07 4.91 4.91 Total: -1.00 -30.26 326.08 -9.28 -39.55 By element: Atomic # 1 Polarization: 5.06 SS G_CDS: -8.37 Total: -3.31 kcal Atomic # 6 Polarization: -6.04 SS G_CDS: -1.05 Total: -7.09 kcal Atomic # 7 Polarization: -52.27 SS G_CDS: -0.65 Total: -52.93 kcal Atomic # 14 Polarization: 22.99 SS G_CDS: -4.12 Total: 18.87 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -30.26 -9.28 -39.55 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183036716.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.603 kcal (2) G-P(sol) polarization free energy of solvation -30.261 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.342 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.284 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.545 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.058 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds