Wall clock time and date at job start Mon Mar 30 2020 01:26:13
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52998 * 1
3 3 H 1.09000 * 109.47502 * 2 1
4 4 C 1.53001 * 109.47492 * 239.99370 * 2 1 3
5 5 C 1.52994 * 109.47430 * 300.00609 * 4 2 1
6 6 C 1.53008 * 109.46645 * 299.99585 * 5 4 2
7 7 C 1.52989 * 109.47147 * 60.00076 * 6 5 4
8 8 C 1.52998 * 109.47300 * 119.99779 * 2 1 3
9 9 H 1.09001 * 109.47720 * 180.02562 * 8 2 1
10 10 C 1.53001 * 109.47028 * 300.00324 * 8 2 1
11 11 N 1.46902 * 109.47382 * 185.85668 * 10 8 2
12 12 C 1.46894 * 111.00470 * 200.37571 * 11 10 8
13 13 C 1.53232 * 109.34428 * 172.74572 * 12 11 10
14 14 N 1.47081 * 108.51805 * 53.83498 * 13 12 11
15 15 C 1.36936 * 120.88452 * 128.83801 * 14 13 12
16 16 H 1.07998 * 119.99797 * 330.00044 * 15 14 13
17 17 C 1.38820 * 120.00053 * 149.99317 * 15 14 13
18 18 N 1.31619 * 119.99675 * 164.05249 * 17 15 14
19 19 Si 1.86797 * 120.00012 * 344.05753 * 17 15 14
20 20 H 1.48494 * 109.47241 * 89.93521 * 19 17 15
21 21 H 1.48499 * 109.46792 * 209.93562 * 19 17 15
22 22 H 1.48501 * 109.47065 * 329.93033 * 19 17 15
23 23 C 1.47081 * 118.23601 * 308.81333 * 14 13 12
24 24 C 1.46903 * 110.99759 * 76.07385 * 11 10 8
25 25 H 1.09007 * 109.46687 * 180.02562 * 1 2 3
26 26 H 1.08992 * 109.47081 * 300.00013 * 1 2 3
27 27 H 1.08998 * 109.47095 * 60.00527 * 1 2 3
28 28 H 1.09011 * 109.46637 * 60.00152 * 4 2 1
29 29 H 1.08996 * 109.47423 * 179.97438 * 4 2 1
30 30 H 1.08996 * 109.47352 * 59.99302 * 5 4 2
31 31 H 1.08999 * 109.47391 * 180.02562 * 5 4 2
32 32 H 1.09005 * 109.46810 * 299.99747 * 6 5 4
33 33 H 1.08998 * 109.46587 * 180.02562 * 6 5 4
34 34 H 1.08998 * 109.47145 * 180.02562 * 7 6 5
35 35 H 1.09005 * 109.47534 * 60.00115 * 7 6 5
36 36 H 1.09003 * 109.47360 * 305.85667 * 10 8 2
37 37 H 1.08997 * 109.47383 * 65.85685 * 10 8 2
38 38 H 1.09002 * 109.49555 * 292.71423 * 12 11 10
39 39 H 1.09004 * 109.48952 * 52.78348 * 12 11 10
40 40 H 1.09002 * 109.62844 * 294.12672 * 13 12 11
41 41 H 1.09006 * 109.79139 * 173.63235 * 13 12 11
42 42 H 0.96998 * 119.99889 * 180.02562 * 18 17 15
43 43 H 1.09006 * 109.62869 * 291.47699 * 23 14 13
44 44 H 1.09000 * 109.78776 * 170.99325 * 23 14 13
45 45 H 1.09000 * 109.49630 * 307.21866 * 24 11 10
46 46 H 1.09005 * 109.49113 * 67.27085 * 24 11 10
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8934 1.0276 0.0000
4 6 2.0401 -0.7214 -1.2491
5 6 1.5301 -2.1638 -1.2492
6 6 2.0401 -2.8850 0.0002
7 6 1.5300 -2.1637 1.2493
8 6 2.0400 -0.7212 1.2492
9 1 3.1300 -0.7208 1.2495
10 6 1.5300 0.0001 2.4985
11 7 2.1316 -0.6059 3.6938
12 6 1.3417 -0.2995 4.8938
13 6 1.8950 -1.0932 6.0820
14 7 3.3350 -0.8172 6.1982
15 6 3.8821 -0.4289 7.3920
16 1 3.2905 0.1324 8.1000
17 6 5.1973 -0.7567 7.6921
18 7 5.8235 -0.1364 8.6695
19 14 6.0781 -2.0782 6.7087
20 1 6.7585 -1.4575 5.5438
21 1 7.0847 -2.7483 7.5706
22 1 5.0914 -3.0794 6.2300
23 6 4.1719 -0.9699 4.9984
24 6 3.5289 -0.1811 3.8528
25 1 -0.3633 -1.0278 0.0005
26 1 -0.3633 0.5138 0.8899
27 1 -0.3633 0.5137 -0.8900
28 1 1.6767 -0.2075 -2.1392
29 1 3.1300 -0.7210 -1.2494
30 1 0.4401 -2.1638 -1.2492
31 1 1.8938 -2.6778 -2.1388
32 1 3.1301 -2.8850 0.0002
33 1 1.6771 -3.9128 0.0000
34 1 1.8937 -2.6772 2.1393
35 1 0.4400 -2.1637 1.2493
36 1 1.8051 1.0536 2.4476
37 1 0.4451 -0.0899 2.5525
38 1 1.4045 0.7674 5.1081
39 1 0.3010 -0.5761 4.7245
40 1 1.7388 -2.1590 5.9150
41 1 1.3886 -0.7879 6.9977
42 1 6.7425 -0.3652 8.8790
43 1 4.2345 -2.0238 4.7273
44 1 5.1716 -0.5822 5.1940
45 1 4.0745 -0.3717 2.9287
46 1 3.5613 0.8843 4.0812
RHF calculation, no. of doubly occupied orbitals= 52
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000183036716.mol2 46
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 01:26:13
Heat of formation + Delta-G solvation = -10.188385 kcal
Electronic energy + Delta-G solvation = -21789.226314 eV
Core-core repulsion = 18905.632589 eV
Total energy + Delta-G solvation = -2883.593725 eV
No. of doubly occupied orbitals = 52
Molecular weight
(most abundant/longest-lived isotopes) = 266.205 amu
Computer time = 0.57 seconds
Orbital eigenvalues (eV)
-40.69245 -39.31635 -36.27525 -33.86308 -32.86951 -32.11094 -31.84904 -28.89196
-27.55269 -25.70989 -24.79038 -24.08959 -22.96601 -21.78967 -21.01574 -19.20564
-18.80805 -17.46905 -16.68951 -16.23020 -16.05711 -15.86987 -15.59001 -15.26566
-15.18461 -14.87079 -14.41235 -14.33737 -14.06729 -13.56106 -13.53177 -13.38886
-13.11622 -12.76299 -12.66309 -12.40705 -12.33031 -12.24537 -12.02513 -11.93580
-11.82038 -11.61549 -11.54418 -11.37740 -10.98943 -10.80437 -10.73854 -10.67376
-9.29913 -8.85215 -8.18894 -5.55247 1.27718 1.39272 1.49379 2.39363
2.90469 3.08299 3.34173 3.75879 3.89036 3.93545 4.15920 4.19240
4.22029 4.36974 4.42532 4.45691 4.47980 4.54866 4.57052 4.61195
4.64947 4.68854 4.77621 4.79888 4.86007 4.90526 4.94996 4.98996
5.01165 5.06750 5.15479 5.24704 5.27829 5.29686 5.33606 5.39605
5.46370 5.55587 5.66488 5.76483 5.83599 6.08815 6.15495 6.28228
6.88626 7.58220 8.02683 9.01350
Molecular weight = 266.21amu
Principal moments of inertia in cm(-1)
A = 0.030592 B = 0.004908 C = 0.004571
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 915.066885 B = 5704.007062 C = 6123.914011
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.148 4.148
2 C -0.084 4.084
3 H 0.063 0.937
4 C -0.111 4.111
5 C -0.116 4.116
6 C -0.119 4.119
7 C -0.101 4.101
8 C -0.070 4.070
9 H 0.054 0.946
10 C 0.062 3.938
11 N -0.534 5.534
12 C 0.053 3.947
13 C 0.147 3.853
14 N -0.624 5.624
15 C -0.251 4.251
16 H 0.051 0.949
17 C -0.033 4.033
18 N -0.961 5.961
19 Si 0.953 3.047
20 H -0.272 1.272
21 H -0.309 1.309
22 H -0.263 1.263
23 C 0.125 3.875
24 C 0.056 3.944
25 H 0.064 0.936
26 H 0.052 0.948
27 H 0.059 0.941
28 H 0.070 0.930
29 H 0.054 0.946
30 H 0.069 0.931
31 H 0.064 0.936
32 H 0.050 0.950
33 H 0.061 0.939
34 H 0.051 0.949
35 H 0.065 0.935
36 H 0.026 0.974
37 H 0.085 0.915
38 H 0.018 0.982
39 H 0.099 0.901
40 H 0.035 0.965
41 H 0.060 0.940
42 H 0.262 0.738
43 H 0.034 0.966
44 H 0.051 0.949
45 H 0.086 0.914
46 H 0.019 0.981
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -11.535 -2.509 -22.636 25.530
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.205 4.205
2 C -0.103 4.103
3 H 0.081 0.919
4 C -0.149 4.149
5 C -0.154 4.154
6 C -0.157 4.157
7 C -0.139 4.139
8 C -0.089 4.089
9 H 0.073 0.927
10 C -0.065 4.065
11 N -0.258 5.258
12 C -0.076 4.076
13 C 0.022 3.978
14 N -0.349 5.349
15 C -0.380 4.380
16 H 0.068 0.932
17 C -0.228 4.228
18 N -0.607 5.607
19 Si 0.782 3.218
20 H -0.199 1.199
21 H -0.238 1.238
22 H -0.188 1.188
23 C 0.000 4.000
24 C -0.074 4.074
25 H 0.083 0.917
26 H 0.071 0.929
27 H 0.078 0.922
28 H 0.089 0.911
29 H 0.072 0.928
30 H 0.088 0.912
31 H 0.082 0.918
32 H 0.068 0.932
33 H 0.080 0.920
34 H 0.070 0.930
35 H 0.084 0.916
36 H 0.044 0.956
37 H 0.103 0.897
38 H 0.036 0.964
39 H 0.117 0.883
40 H 0.054 0.946
41 H 0.078 0.922
42 H 0.071 0.929
43 H 0.052 0.948
44 H 0.069 0.931
45 H 0.105 0.895
46 H 0.037 0.963
Dipole moment (debyes) X Y Z Total
from point charges -11.431 -3.002 -22.597 25.501
hybrid contribution 1.008 0.542 0.545 1.268
sum -10.423 -2.460 -22.052 24.514
Atomic orbital electron populations
1.21949 0.94570 1.02342 1.01664 1.21073 0.96605 0.98572 0.94011
0.91868 1.21534 1.00177 0.95903 0.97282 1.21548 1.01174 0.95312
0.97339 1.21539 1.00187 0.98999 0.94978 1.21411 1.00510 0.94555
0.97378 1.21081 0.99403 0.95584 0.92876 0.92737 1.22273 0.99576
0.95293 0.89390 1.61876 1.01469 1.59291 1.03183 1.22484 0.97680
0.97146 0.90275 1.21183 0.82887 0.97280 0.96450 1.44520 1.04948
1.80087 1.05368 1.18881 0.96711 1.27368 0.95070 0.93157 1.25971
0.98266 1.00521 0.98051 1.69924 1.12185 1.44052 1.34548 0.85840
0.77779 0.80822 0.77341 1.19903 1.23799 1.18805 1.21450 0.94071
0.97683 0.86776 1.22411 0.90365 0.96290 0.98287 0.91749 0.92908
0.92200 0.91141 0.92758 0.91199 0.91763 0.93160 0.91980 0.92991
0.91613 0.95574 0.89701 0.96358 0.88318 0.94650 0.92172 0.92868
0.94842 0.93095 0.89545 0.96270
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -2.17 8.15 71.98 0.59 -1.58 16
2 C -0.08 -1.41 2.72 -10.79 -0.03 -1.44 16
3 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16
4 C -0.11 -1.69 5.45 30.59 0.17 -1.53 16
5 C -0.12 -1.72 5.65 30.60 0.17 -1.54 16
6 C -0.12 -2.15 5.92 30.59 0.18 -1.97 16
7 C -0.10 -2.10 4.82 30.59 0.15 -1.95 16
8 C -0.07 -1.49 2.03 -10.79 -0.02 -1.51 16
9 H 0.05 1.32 6.68 -2.39 -0.02 1.30 16
10 C 0.06 1.49 3.86 86.30 0.33 1.82 16
11 N -0.53 -16.55 4.05 -895.26 -3.62 -20.17 16
12 C 0.05 1.72 5.59 86.38 0.48 2.20 16
13 C 0.15 5.87 6.69 86.35 0.58 6.45 16
14 N -0.62 -30.60 2.79 -698.12 -1.95 -32.54 16
15 C -0.25 -14.70 10.08 84.04 0.85 -13.85 16
16 H 0.05 3.22 8.06 -2.91 -0.02 3.19 16
17 C -0.03 -2.01 5.30 84.86 0.45 -1.56 16
18 N -0.96 -61.68 13.97 21.65 0.30 -61.38 16
19 Si 0.95 48.13 24.26 68.60 1.66 49.79 16
20 H -0.27 -12.92 6.56 99.48 0.65 -12.27 16
21 H -0.31 -15.73 7.11 99.48 0.71 -15.02 16
22 H -0.26 -12.92 6.49 99.48 0.65 -12.27 16
23 C 0.13 5.55 4.32 86.35 0.37 5.92 16
24 C 0.06 2.00 5.44 86.38 0.47 2.47 16
25 H 0.06 0.92 4.81 -2.38 -0.01 0.91 16
26 H 0.05 0.80 6.56 -2.39 -0.02 0.78 16
27 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16
28 H 0.07 0.91 8.14 -2.38 -0.02 0.90 16
29 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16
30 H 0.07 0.95 6.43 -2.39 -0.02 0.94 16
31 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16
32 H 0.05 0.99 8.14 -2.38 -0.02 0.97 16
33 H 0.06 1.05 8.14 -2.39 -0.02 1.04 16
34 H 0.05 1.34 7.78 -2.39 -0.02 1.32 16
35 H 0.07 1.26 6.43 -2.38 -0.02 1.24 16
36 H 0.03 0.66 7.99 -2.39 -0.02 0.64 16
37 H 0.08 1.81 6.38 -2.39 -0.02 1.80 16
38 H 0.02 0.64 8.14 -2.39 -0.02 0.62 16
39 H 0.10 2.55 7.90 -2.38 -0.02 2.53 16
40 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16
41 H 0.06 2.40 7.95 -2.38 -0.02 2.38 16
42 H 0.26 15.97 8.31 -92.71 -0.77 15.19 16
43 H 0.03 1.49 6.78 -2.38 -0.02 1.47 16
44 H 0.05 2.46 4.71 -2.39 -0.01 2.45 16
45 H 0.09 2.71 6.63 -2.39 -0.02 2.69 16
46 H 0.02 0.73 8.14 -2.38 -0.02 0.72 16
Total: -1.00 -65.91 326.08 1.95 -63.96
By element:
Atomic # 1 Polarization: 7.60 SS G_CDS: 0.81 Total: 8.41 kcal
Atomic # 6 Polarization: -12.81 SS G_CDS: 4.74 Total: -8.07 kcal
Atomic # 7 Polarization: -108.83 SS G_CDS: -5.27 Total: -114.09 kcal
Atomic # 14 Polarization: 48.13 SS G_CDS: 1.66 Total: 49.79 kcal
Total: -65.91 1.95 -63.96 kcal
The number of atoms in the molecule is 46
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000183036716.mol2 46
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 53.776 kcal
(2) G-P(sol) polarization free energy of solvation -65.910 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.134 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.945 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.965 kcal
(6) G-S(sol) free energy of system = (1) + (5) -10.188 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.57 seconds