Wall clock time and date at job start Mon Mar 30 2020 01:26:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.47502 * 2 1 4 4 C 1.53001 * 109.47492 * 239.99370 * 2 1 3 5 5 C 1.52994 * 109.47430 * 300.00609 * 4 2 1 6 6 C 1.53008 * 109.46645 * 299.99585 * 5 4 2 7 7 C 1.52989 * 109.47147 * 60.00076 * 6 5 4 8 8 C 1.52998 * 109.47300 * 119.99779 * 2 1 3 9 9 H 1.09001 * 109.47720 * 180.02562 * 8 2 1 10 10 C 1.53001 * 109.47028 * 300.00324 * 8 2 1 11 11 N 1.46902 * 109.47382 * 185.85668 * 10 8 2 12 12 C 1.46894 * 111.00470 * 200.37571 * 11 10 8 13 13 C 1.53232 * 109.34428 * 172.74572 * 12 11 10 14 14 N 1.47081 * 108.51805 * 53.83498 * 13 12 11 15 15 C 1.36936 * 120.88452 * 128.83801 * 14 13 12 16 16 H 1.07998 * 119.99797 * 330.00044 * 15 14 13 17 17 C 1.38820 * 120.00053 * 149.99317 * 15 14 13 18 18 N 1.31619 * 119.99675 * 164.05249 * 17 15 14 19 19 Si 1.86797 * 120.00012 * 344.05753 * 17 15 14 20 20 H 1.48494 * 109.47241 * 89.93521 * 19 17 15 21 21 H 1.48499 * 109.46792 * 209.93562 * 19 17 15 22 22 H 1.48501 * 109.47065 * 329.93033 * 19 17 15 23 23 C 1.47081 * 118.23601 * 308.81333 * 14 13 12 24 24 C 1.46903 * 110.99759 * 76.07385 * 11 10 8 25 25 H 1.09007 * 109.46687 * 180.02562 * 1 2 3 26 26 H 1.08992 * 109.47081 * 300.00013 * 1 2 3 27 27 H 1.08998 * 109.47095 * 60.00527 * 1 2 3 28 28 H 1.09011 * 109.46637 * 60.00152 * 4 2 1 29 29 H 1.08996 * 109.47423 * 179.97438 * 4 2 1 30 30 H 1.08996 * 109.47352 * 59.99302 * 5 4 2 31 31 H 1.08999 * 109.47391 * 180.02562 * 5 4 2 32 32 H 1.09005 * 109.46810 * 299.99747 * 6 5 4 33 33 H 1.08998 * 109.46587 * 180.02562 * 6 5 4 34 34 H 1.08998 * 109.47145 * 180.02562 * 7 6 5 35 35 H 1.09005 * 109.47534 * 60.00115 * 7 6 5 36 36 H 1.09003 * 109.47360 * 305.85667 * 10 8 2 37 37 H 1.08997 * 109.47383 * 65.85685 * 10 8 2 38 38 H 1.09002 * 109.49555 * 292.71423 * 12 11 10 39 39 H 1.09004 * 109.48952 * 52.78348 * 12 11 10 40 40 H 1.09002 * 109.62844 * 294.12672 * 13 12 11 41 41 H 1.09006 * 109.79139 * 173.63235 * 13 12 11 42 42 H 0.96998 * 119.99889 * 180.02562 * 18 17 15 43 43 H 1.09006 * 109.62869 * 291.47699 * 23 14 13 44 44 H 1.09000 * 109.78776 * 170.99325 * 23 14 13 45 45 H 1.09000 * 109.49630 * 307.21866 * 24 11 10 46 46 H 1.09005 * 109.49113 * 67.27085 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7214 -1.2491 5 6 1.5301 -2.1638 -1.2492 6 6 2.0401 -2.8850 0.0002 7 6 1.5300 -2.1637 1.2493 8 6 2.0400 -0.7212 1.2492 9 1 3.1300 -0.7208 1.2495 10 6 1.5300 0.0001 2.4985 11 7 2.1316 -0.6059 3.6938 12 6 1.3417 -0.2995 4.8938 13 6 1.8950 -1.0932 6.0820 14 7 3.3350 -0.8172 6.1982 15 6 3.8821 -0.4289 7.3920 16 1 3.2905 0.1324 8.1000 17 6 5.1973 -0.7567 7.6921 18 7 5.8235 -0.1364 8.6695 19 14 6.0781 -2.0782 6.7087 20 1 6.7585 -1.4575 5.5438 21 1 7.0847 -2.7483 7.5706 22 1 5.0914 -3.0794 6.2300 23 6 4.1719 -0.9699 4.9984 24 6 3.5289 -0.1811 3.8528 25 1 -0.3633 -1.0278 0.0005 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5137 -0.8900 28 1 1.6767 -0.2075 -2.1392 29 1 3.1300 -0.7210 -1.2494 30 1 0.4401 -2.1638 -1.2492 31 1 1.8938 -2.6778 -2.1388 32 1 3.1301 -2.8850 0.0002 33 1 1.6771 -3.9128 0.0000 34 1 1.8937 -2.6772 2.1393 35 1 0.4400 -2.1637 1.2493 36 1 1.8051 1.0536 2.4476 37 1 0.4451 -0.0899 2.5525 38 1 1.4045 0.7674 5.1081 39 1 0.3010 -0.5761 4.7245 40 1 1.7388 -2.1590 5.9150 41 1 1.3886 -0.7879 6.9977 42 1 6.7425 -0.3652 8.8790 43 1 4.2345 -2.0238 4.7273 44 1 5.1716 -0.5822 5.1940 45 1 4.0745 -0.3717 2.9287 46 1 3.5613 0.8843 4.0812 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000183036716.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:26:13 Heat of formation + Delta-G solvation = -10.188385 kcal Electronic energy + Delta-G solvation = -21789.226314 eV Core-core repulsion = 18905.632589 eV Total energy + Delta-G solvation = -2883.593725 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 266.205 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.69245 -39.31635 -36.27525 -33.86308 -32.86951 -32.11094 -31.84904 -28.89196 -27.55269 -25.70989 -24.79038 -24.08959 -22.96601 -21.78967 -21.01574 -19.20564 -18.80805 -17.46905 -16.68951 -16.23020 -16.05711 -15.86987 -15.59001 -15.26566 -15.18461 -14.87079 -14.41235 -14.33737 -14.06729 -13.56106 -13.53177 -13.38886 -13.11622 -12.76299 -12.66309 -12.40705 -12.33031 -12.24537 -12.02513 -11.93580 -11.82038 -11.61549 -11.54418 -11.37740 -10.98943 -10.80437 -10.73854 -10.67376 -9.29913 -8.85215 -8.18894 -5.55247 1.27718 1.39272 1.49379 2.39363 2.90469 3.08299 3.34173 3.75879 3.89036 3.93545 4.15920 4.19240 4.22029 4.36974 4.42532 4.45691 4.47980 4.54866 4.57052 4.61195 4.64947 4.68854 4.77621 4.79888 4.86007 4.90526 4.94996 4.98996 5.01165 5.06750 5.15479 5.24704 5.27829 5.29686 5.33606 5.39605 5.46370 5.55587 5.66488 5.76483 5.83599 6.08815 6.15495 6.28228 6.88626 7.58220 8.02683 9.01350 Molecular weight = 266.21amu Principal moments of inertia in cm(-1) A = 0.030592 B = 0.004908 C = 0.004571 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 915.066885 B = 5704.007062 C = 6123.914011 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.084 4.084 3 H 0.063 0.937 4 C -0.111 4.111 5 C -0.116 4.116 6 C -0.119 4.119 7 C -0.101 4.101 8 C -0.070 4.070 9 H 0.054 0.946 10 C 0.062 3.938 11 N -0.534 5.534 12 C 0.053 3.947 13 C 0.147 3.853 14 N -0.624 5.624 15 C -0.251 4.251 16 H 0.051 0.949 17 C -0.033 4.033 18 N -0.961 5.961 19 Si 0.953 3.047 20 H -0.272 1.272 21 H -0.309 1.309 22 H -0.263 1.263 23 C 0.125 3.875 24 C 0.056 3.944 25 H 0.064 0.936 26 H 0.052 0.948 27 H 0.059 0.941 28 H 0.070 0.930 29 H 0.054 0.946 30 H 0.069 0.931 31 H 0.064 0.936 32 H 0.050 0.950 33 H 0.061 0.939 34 H 0.051 0.949 35 H 0.065 0.935 36 H 0.026 0.974 37 H 0.085 0.915 38 H 0.018 0.982 39 H 0.099 0.901 40 H 0.035 0.965 41 H 0.060 0.940 42 H 0.262 0.738 43 H 0.034 0.966 44 H 0.051 0.949 45 H 0.086 0.914 46 H 0.019 0.981 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.535 -2.509 -22.636 25.530 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.103 4.103 3 H 0.081 0.919 4 C -0.149 4.149 5 C -0.154 4.154 6 C -0.157 4.157 7 C -0.139 4.139 8 C -0.089 4.089 9 H 0.073 0.927 10 C -0.065 4.065 11 N -0.258 5.258 12 C -0.076 4.076 13 C 0.022 3.978 14 N -0.349 5.349 15 C -0.380 4.380 16 H 0.068 0.932 17 C -0.228 4.228 18 N -0.607 5.607 19 Si 0.782 3.218 20 H -0.199 1.199 21 H -0.238 1.238 22 H -0.188 1.188 23 C 0.000 4.000 24 C -0.074 4.074 25 H 0.083 0.917 26 H 0.071 0.929 27 H 0.078 0.922 28 H 0.089 0.911 29 H 0.072 0.928 30 H 0.088 0.912 31 H 0.082 0.918 32 H 0.068 0.932 33 H 0.080 0.920 34 H 0.070 0.930 35 H 0.084 0.916 36 H 0.044 0.956 37 H 0.103 0.897 38 H 0.036 0.964 39 H 0.117 0.883 40 H 0.054 0.946 41 H 0.078 0.922 42 H 0.071 0.929 43 H 0.052 0.948 44 H 0.069 0.931 45 H 0.105 0.895 46 H 0.037 0.963 Dipole moment (debyes) X Y Z Total from point charges -11.431 -3.002 -22.597 25.501 hybrid contribution 1.008 0.542 0.545 1.268 sum -10.423 -2.460 -22.052 24.514 Atomic orbital electron populations 1.21949 0.94570 1.02342 1.01664 1.21073 0.96605 0.98572 0.94011 0.91868 1.21534 1.00177 0.95903 0.97282 1.21548 1.01174 0.95312 0.97339 1.21539 1.00187 0.98999 0.94978 1.21411 1.00510 0.94555 0.97378 1.21081 0.99403 0.95584 0.92876 0.92737 1.22273 0.99576 0.95293 0.89390 1.61876 1.01469 1.59291 1.03183 1.22484 0.97680 0.97146 0.90275 1.21183 0.82887 0.97280 0.96450 1.44520 1.04948 1.80087 1.05368 1.18881 0.96711 1.27368 0.95070 0.93157 1.25971 0.98266 1.00521 0.98051 1.69924 1.12185 1.44052 1.34548 0.85840 0.77779 0.80822 0.77341 1.19903 1.23799 1.18805 1.21450 0.94071 0.97683 0.86776 1.22411 0.90365 0.96290 0.98287 0.91749 0.92908 0.92200 0.91141 0.92758 0.91199 0.91763 0.93160 0.91980 0.92991 0.91613 0.95574 0.89701 0.96358 0.88318 0.94650 0.92172 0.92868 0.94842 0.93095 0.89545 0.96270 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.17 8.15 71.98 0.59 -1.58 16 2 C -0.08 -1.41 2.72 -10.79 -0.03 -1.44 16 3 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 4 C -0.11 -1.69 5.45 30.59 0.17 -1.53 16 5 C -0.12 -1.72 5.65 30.60 0.17 -1.54 16 6 C -0.12 -2.15 5.92 30.59 0.18 -1.97 16 7 C -0.10 -2.10 4.82 30.59 0.15 -1.95 16 8 C -0.07 -1.49 2.03 -10.79 -0.02 -1.51 16 9 H 0.05 1.32 6.68 -2.39 -0.02 1.30 16 10 C 0.06 1.49 3.86 86.30 0.33 1.82 16 11 N -0.53 -16.55 4.05 -895.26 -3.62 -20.17 16 12 C 0.05 1.72 5.59 86.38 0.48 2.20 16 13 C 0.15 5.87 6.69 86.35 0.58 6.45 16 14 N -0.62 -30.60 2.79 -698.12 -1.95 -32.54 16 15 C -0.25 -14.70 10.08 84.04 0.85 -13.85 16 16 H 0.05 3.22 8.06 -2.91 -0.02 3.19 16 17 C -0.03 -2.01 5.30 84.86 0.45 -1.56 16 18 N -0.96 -61.68 13.97 21.65 0.30 -61.38 16 19 Si 0.95 48.13 24.26 68.60 1.66 49.79 16 20 H -0.27 -12.92 6.56 99.48 0.65 -12.27 16 21 H -0.31 -15.73 7.11 99.48 0.71 -15.02 16 22 H -0.26 -12.92 6.49 99.48 0.65 -12.27 16 23 C 0.13 5.55 4.32 86.35 0.37 5.92 16 24 C 0.06 2.00 5.44 86.38 0.47 2.47 16 25 H 0.06 0.92 4.81 -2.38 -0.01 0.91 16 26 H 0.05 0.80 6.56 -2.39 -0.02 0.78 16 27 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 28 H 0.07 0.91 8.14 -2.38 -0.02 0.90 16 29 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 30 H 0.07 0.95 6.43 -2.39 -0.02 0.94 16 31 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 32 H 0.05 0.99 8.14 -2.38 -0.02 0.97 16 33 H 0.06 1.05 8.14 -2.39 -0.02 1.04 16 34 H 0.05 1.34 7.78 -2.39 -0.02 1.32 16 35 H 0.07 1.26 6.43 -2.38 -0.02 1.24 16 36 H 0.03 0.66 7.99 -2.39 -0.02 0.64 16 37 H 0.08 1.81 6.38 -2.39 -0.02 1.80 16 38 H 0.02 0.64 8.14 -2.39 -0.02 0.62 16 39 H 0.10 2.55 7.90 -2.38 -0.02 2.53 16 40 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 41 H 0.06 2.40 7.95 -2.38 -0.02 2.38 16 42 H 0.26 15.97 8.31 -92.71 -0.77 15.19 16 43 H 0.03 1.49 6.78 -2.38 -0.02 1.47 16 44 H 0.05 2.46 4.71 -2.39 -0.01 2.45 16 45 H 0.09 2.71 6.63 -2.39 -0.02 2.69 16 46 H 0.02 0.73 8.14 -2.38 -0.02 0.72 16 Total: -1.00 -65.91 326.08 1.95 -63.96 By element: Atomic # 1 Polarization: 7.60 SS G_CDS: 0.81 Total: 8.41 kcal Atomic # 6 Polarization: -12.81 SS G_CDS: 4.74 Total: -8.07 kcal Atomic # 7 Polarization: -108.83 SS G_CDS: -5.27 Total: -114.09 kcal Atomic # 14 Polarization: 48.13 SS G_CDS: 1.66 Total: 49.79 kcal Total: -65.91 1.95 -63.96 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183036716.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.776 kcal (2) G-P(sol) polarization free energy of solvation -65.910 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.134 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.945 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.965 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.188 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds