Wall clock time and date at job start Mon Mar 30 2020 01:26:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09000 * 109.47183 * 2 1 4 4 C 1.52998 * 109.46931 * 119.99562 * 2 1 3 5 5 C 1.53008 * 109.47341 * 179.97438 * 4 2 1 6 6 C 1.52996 * 109.46911 * 300.00390 * 5 4 2 7 7 C 1.52997 * 109.47578 * 60.00035 * 6 5 4 8 8 C 1.52999 * 109.47402 * 239.99902 * 2 1 3 9 9 H 1.08999 * 109.46608 * 299.99863 * 8 2 1 10 10 C 1.52998 * 109.47355 * 59.99920 * 8 2 1 11 11 N 1.46896 * 109.47188 * 183.78034 * 10 8 2 12 12 C 1.46899 * 110.99850 * 75.56518 * 11 10 8 13 13 C 1.53238 * 109.36426 * 187.23502 * 12 11 10 14 14 N 1.47083 * 108.52132 * 306.21874 * 13 12 11 15 15 C 1.36937 * 120.86014 * 231.12003 * 14 13 12 16 16 H 1.08003 * 119.99890 * 28.88465 * 15 14 13 17 17 C 1.38812 * 120.00075 * 208.88967 * 15 14 13 18 18 N 1.31620 * 119.99636 * 13.58105 * 17 15 14 19 19 Si 1.86797 * 120.00335 * 193.57955 * 17 15 14 20 20 H 1.48508 * 109.46851 * 0.02562 * 19 17 15 21 21 H 1.48496 * 109.47370 * 120.00103 * 19 17 15 22 22 H 1.48499 * 109.47119 * 240.00249 * 19 17 15 23 23 C 1.47081 * 118.26030 * 51.13244 * 14 13 12 24 24 C 1.46903 * 110.99945 * 199.86639 * 11 10 8 25 25 H 1.09000 * 109.47183 * 180.02562 * 1 2 3 26 26 H 1.08995 * 109.47444 * 300.00451 * 1 2 3 27 27 H 1.09006 * 109.47109 * 60.00283 * 1 2 3 28 28 H 1.08998 * 109.47766 * 300.00361 * 4 2 1 29 29 H 1.09008 * 109.46981 * 60.00483 * 4 2 1 30 30 H 1.09000 * 109.46924 * 60.00345 * 5 4 2 31 31 H 1.08991 * 109.47051 * 180.02562 * 5 4 2 32 32 H 1.09006 * 109.46806 * 179.97438 * 6 5 4 33 33 H 1.09000 * 109.47289 * 299.99731 * 6 5 4 34 34 H 1.08998 * 109.47907 * 179.97438 * 7 6 5 35 35 H 1.09003 * 109.47364 * 59.98855 * 7 6 5 36 36 H 1.09000 * 109.46697 * 63.78021 * 10 8 2 37 37 H 1.09000 * 109.46772 * 303.78329 * 10 8 2 38 38 H 1.08994 * 109.49749 * 307.21725 * 12 11 10 39 39 H 1.09003 * 109.49197 * 67.26916 * 12 11 10 40 40 H 1.09004 * 109.62463 * 65.89400 * 13 12 11 41 41 H 1.08995 * 109.63002 * 186.47320 * 13 12 11 42 42 H 0.97002 * 119.99810 * 179.97438 * 18 17 15 43 43 H 1.09005 * 109.62968 * 189.12872 * 23 14 13 44 44 H 1.09000 * 109.62923 * 68.54567 * 23 14 13 45 45 H 1.08999 * 109.49615 * 292.70866 * 24 11 10 46 46 H 1.08995 * 109.49137 * 52.76508 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 3.5700 -0.7218 1.2491 6 6 4.0794 -1.4434 -0.0001 7 6 3.5696 -0.7222 -1.2494 8 6 2.0400 -0.7213 -1.2492 9 1 1.6767 -1.7489 -1.2491 10 6 1.5301 -0.0001 -2.4985 11 7 1.9438 -0.7433 -3.6961 12 6 1.1237 -1.9485 -3.8772 13 6 1.6984 -2.7865 -5.0242 14 7 1.8178 -1.9302 -6.2141 15 6 1.2991 -2.3249 -7.4185 16 1 0.4395 -2.9781 -7.4482 17 6 1.8782 -1.8855 -8.6010 18 7 3.0661 -1.3192 -8.5813 19 14 0.9715 -2.0980 -10.2204 20 1 -0.3358 -2.7575 -9.9728 21 1 0.7448 -0.7673 -10.8391 22 1 1.7845 -2.9378 -11.1363 23 6 2.5092 -0.6394 -6.0766 24 6 1.9019 0.1139 -4.8883 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5139 0.8899 27 1 -0.3634 0.5138 -0.8901 28 1 1.6766 -0.2074 2.1393 29 1 1.6766 -1.7489 1.2493 30 1 3.9337 0.3058 1.2488 31 1 3.9332 -1.2359 2.1388 32 1 5.1695 -1.4434 -0.0005 33 1 3.7157 -2.4709 0.0001 34 1 3.9329 -1.2360 -2.1394 35 1 3.9332 0.3054 -1.2496 36 1 1.9477 1.0061 -2.5330 37 1 0.4422 0.0589 -2.4652 38 1 1.1315 -2.5352 -2.9587 39 1 0.1001 -1.6595 -4.1154 40 1 2.6822 -3.1637 -4.7449 41 1 1.0305 -3.6208 -5.2385 42 1 3.4709 -1.0124 -9.4078 43 1 2.3773 -0.0545 -6.9869 44 1 3.5709 -0.8098 -5.8981 45 1 0.8675 0.3743 -5.1129 46 1 2.4738 1.0231 -4.7029 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000183036734.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:26:16 Heat of formation + Delta-G solvation = -0.851807 kcal Electronic energy + Delta-G solvation = -21594.362108 eV Core-core repulsion = 18711.173248 eV Total energy + Delta-G solvation = -2883.188860 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 266.205 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -39.37197 -37.54202 -34.42525 -32.71384 -31.68446 -30.59357 -29.69480 -27.22038 -26.10383 -24.35933 -22.75832 -22.40106 -21.34412 -20.54359 -19.50852 -18.98735 -16.72688 -15.23093 -15.18540 -14.77890 -14.55869 -14.33519 -14.01307 -13.79683 -13.55567 -13.37347 -13.33647 -12.71561 -12.58150 -12.41065 -11.89951 -11.67233 -11.56553 -11.45266 -11.24416 -11.03431 -10.87866 -10.80276 -10.72052 -10.45208 -10.35564 -10.16419 -10.02923 -9.90244 -9.80892 -9.68813 -9.45382 -8.47367 -7.66548 -6.57838 -5.73992 -3.18088 3.38683 3.46204 3.48429 4.40376 4.52898 4.67503 4.76065 4.87903 5.10927 5.18106 5.37791 5.42797 5.45011 5.51030 5.56680 5.57807 5.62211 5.66900 5.80420 5.81225 5.89770 5.92428 6.00616 6.04761 6.09154 6.10788 6.22366 6.24311 6.26126 6.31013 6.32560 6.41038 6.45692 6.59849 6.65097 6.68360 6.79319 7.00266 7.32708 7.71439 7.74646 7.79615 7.89074 8.49435 9.26304 9.88895 10.48727 11.34539 Molecular weight = 266.21amu Principal moments of inertia in cm(-1) A = 0.039362 B = 0.004154 C = 0.004029 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 711.182710 B = 6739.147502 C = 6948.610860 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.087 4.087 3 H 0.067 0.933 4 C -0.111 4.111 5 C -0.119 4.119 6 C -0.120 4.120 7 C -0.105 4.105 8 C -0.072 4.072 9 H 0.068 0.932 10 C 0.056 3.944 11 N -0.529 5.529 12 C 0.045 3.955 13 C 0.149 3.851 14 N -0.595 5.595 15 C -0.251 4.251 16 H 0.064 0.936 17 C 0.002 3.998 18 N -0.904 5.904 19 Si 0.902 3.098 20 H -0.278 1.278 21 H -0.290 1.290 22 H -0.290 1.290 23 C 0.180 3.820 24 C 0.036 3.964 25 H 0.052 0.948 26 H 0.049 0.951 27 H 0.057 0.943 28 H 0.056 0.944 29 H 0.059 0.941 30 H 0.058 0.942 31 H 0.055 0.945 32 H 0.057 0.943 33 H 0.058 0.942 34 H 0.079 0.921 35 H 0.053 0.947 36 H 0.063 0.937 37 H 0.030 0.970 38 H 0.060 0.940 39 H 0.024 0.976 40 H 0.024 0.976 41 H 0.053 0.947 42 H 0.253 0.747 43 H 0.086 0.914 44 H 0.026 0.974 45 H 0.021 0.979 46 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.714 3.041 18.343 18.672 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.106 4.106 3 H 0.085 0.915 4 C -0.149 4.149 5 C -0.156 4.156 6 C -0.158 4.158 7 C -0.142 4.142 8 C -0.091 4.091 9 H 0.086 0.914 10 C -0.073 4.073 11 N -0.254 5.254 12 C -0.084 4.084 13 C 0.022 3.978 14 N -0.319 5.319 15 C -0.380 4.380 16 H 0.082 0.918 17 C -0.196 4.196 18 N -0.549 5.549 19 Si 0.733 3.267 20 H -0.203 1.203 21 H -0.216 1.216 22 H -0.217 1.217 23 C 0.054 3.946 24 C -0.093 4.093 25 H 0.071 0.929 26 H 0.068 0.932 27 H 0.076 0.924 28 H 0.075 0.925 29 H 0.078 0.922 30 H 0.077 0.923 31 H 0.074 0.926 32 H 0.075 0.925 33 H 0.077 0.923 34 H 0.097 0.903 35 H 0.072 0.928 36 H 0.082 0.918 37 H 0.048 0.952 38 H 0.078 0.922 39 H 0.042 0.958 40 H 0.042 0.958 41 H 0.071 0.929 42 H 0.063 0.937 43 H 0.104 0.896 44 H 0.044 0.956 45 H 0.040 0.960 46 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -1.147 2.939 18.235 18.506 hybrid contribution -1.266 0.238 -0.965 1.610 sum -2.413 3.177 17.270 17.725 Atomic orbital electron populations 1.21900 0.95682 1.01715 1.01384 1.21146 0.95101 0.99542 0.94800 0.91505 1.21564 0.95576 1.00537 0.97209 1.21537 0.95643 1.00579 0.97871 1.21564 0.99885 0.99447 0.94890 1.21439 0.94652 1.00325 0.97790 1.21115 0.95956 0.99398 0.92653 0.91392 1.22227 0.97345 0.96989 0.90692 1.61895 1.53829 1.07092 1.02562 1.22619 0.94373 0.92372 0.99053 1.20975 0.97609 0.92335 0.86842 1.44093 1.66644 1.15839 1.05303 1.19236 1.07577 1.28212 0.83006 0.91794 1.25088 0.95380 1.01327 0.97853 1.70013 1.14051 1.44644 1.26207 0.86218 0.79160 0.77380 0.83991 1.20335 1.21631 1.21683 1.20843 0.93623 0.86271 0.93884 1.22896 0.98869 0.95573 0.91977 0.92850 0.93194 0.92396 0.92524 0.92177 0.92297 0.92630 0.92451 0.92294 0.90250 0.92823 0.91843 0.95167 0.92157 0.95787 0.95782 0.92884 0.93720 0.89575 0.95624 0.96019 0.92351 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.49 8.85 37.15 0.33 -1.17 16 2 C -0.09 -0.91 2.25 -90.62 -0.20 -1.11 16 3 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 4 C -0.11 -1.05 5.20 -26.73 -0.14 -1.19 16 5 C -0.12 -1.13 5.92 -26.73 -0.16 -1.28 16 6 C -0.12 -1.30 5.92 -26.73 -0.16 -1.46 16 7 C -0.10 -1.33 5.08 -26.75 -0.14 -1.46 16 8 C -0.07 -0.90 1.76 -90.64 -0.16 -1.06 16 9 H 0.07 0.91 6.70 -51.93 -0.35 0.57 16 10 C 0.06 0.81 4.16 -3.83 -0.02 0.79 16 11 N -0.53 -9.48 3.96 -234.33 -0.93 -10.41 16 12 C 0.05 0.84 5.45 -3.70 -0.02 0.82 16 13 C 0.15 3.26 6.69 -3.60 -0.02 3.24 16 14 N -0.60 -15.41 3.03 -172.01 -0.52 -15.93 16 15 C -0.25 -7.03 9.63 -15.06 -0.14 -7.17 16 16 H 0.06 1.77 7.87 -52.48 -0.41 1.35 16 17 C 0.00 0.05 5.00 -17.43 -0.09 -0.03 16 18 N -0.90 -26.61 11.11 55.49 0.62 -25.99 16 19 Si 0.90 21.94 29.57 -169.99 -5.03 16.92 16 20 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 21 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 22 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 23 C 0.18 4.43 5.38 -3.60 -0.02 4.41 16 24 C 0.04 0.72 5.59 -3.70 -0.02 0.70 16 25 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 26 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 27 H 0.06 0.61 6.35 -51.93 -0.33 0.28 16 28 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.06 0.58 8.14 -51.92 -0.42 0.16 16 30 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 32 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 33 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.08 1.20 7.71 -51.93 -0.40 0.80 16 35 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 36 H 0.06 0.91 7.77 -51.93 -0.40 0.50 16 37 H 0.03 0.44 6.09 -51.93 -0.32 0.13 16 38 H 0.06 0.98 6.62 -51.93 -0.34 0.63 16 39 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 40 H 0.02 0.55 8.14 -51.93 -0.42 0.12 16 41 H 0.05 1.12 7.95 -51.93 -0.41 0.71 16 42 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 43 H 0.09 2.35 6.19 -51.93 -0.32 2.03 16 44 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 45 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 46 H 0.06 1.07 7.90 -51.93 -0.41 0.66 16 LS Contribution 339.33 15.07 5.11 5.11 Total: -1.00 -28.98 339.33 -10.46 -39.44 By element: Atomic # 1 Polarization: 5.61 SS G_CDS: -8.75 Total: -3.15 kcal Atomic # 6 Polarization: -5.03 SS G_CDS: -0.96 Total: -5.99 kcal Atomic # 7 Polarization: -51.50 SS G_CDS: -0.83 Total: -52.33 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.03 Total: 16.92 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -28.98 -10.46 -39.44 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183036734.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.587 kcal (2) G-P(sol) polarization free energy of solvation -28.981 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.606 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.458 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.439 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.852 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds